FFCP PHASE1:Hg19::chr12:52448151..52448200,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt=Q53Y00,Q6IBU8 | |UniProt=Q53Y00,Q6IBU8 | ||
|association_with_transcript=38bp_to_AB307717,AB464647,AB590255,BT007144,CR456704,CU677577,DQ891134,DQ894313,HQ692855_5end | |association_with_transcript=38bp_to_AB307717,AB464647,AB590255,BT007144,CR456704,CU677577,DQ891134,DQ894313,HQ692855_5end | ||
|cluster_id=chr12:52448151..52448200,+ | |||
|coexpression_cluster_id=C1018 | |coexpression_cluster_id=C1018 | ||
|description=CAGE_peak_8_at_NR4A1_5end | |description=CAGE_peak_8_at_NR4A1_5end | ||
|id=chr12:52448151..52448200,+ | |id=chr12:52448151..52448200,+ | ||
|ontology_enrichment_celltype=CL:0000860!2.58e-19!45;CL:0002057!8.69e-19!42;CL:0000557!1.61e-13!71;CL:0000766!7.24e-13!76;CL:0000839!6.07e-12!70;CL:0002009!2.53e-11!65;CL:0002194!3.23e-10!63;CL:0000576!3.23e-10!63;CL:0000040!3.23e-10!63;CL:0000559!3.23e-10!63;CL:0000738!4.98e-07!140 | |ontology_enrichment_celltype=CL:0000860!2.58e-19!45;CL:0002057!8.69e-19!42;CL:0000557!1.61e-13!71;CL:0000766!7.24e-13!76;CL:0000839!6.07e-12!70;CL:0002009!2.53e-11!65;CL:0002194!3.23e-10!63;CL:0000576!3.23e-10!63;CL:0000040!3.23e-10!63;CL:0000559!3.23e-10!63;CL:0000738!4.98e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.73e-18;33!CL:0002057;2.73e-18;33!CL:0000473;1.29e-13;39!CL:0000234;1.29e-13;39!CL:0000766;1.43e-09;69!CL:0000576;2.88e-09;48!CL:0000097;2.81e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.15e-16,42;CL:0002057,4.15e-16,42;CL:0000557,1.62e-15,67;CL:0000766,8.09e-14,72;CL:0000473,2.15e-13,48;CL:0000234,2.15e-13,48;CL:0000839,4.95e-13,66;CL:0002009,1.33e-11,61;CL:0002194,1.20e-09,59;CL:0000576,1.20e-09,59;CL:0000040,1.20e-09,59;CL:0000559,1.20e-09,59;CL:0000763,1.26e-08,108;CL:0000049,1.26e-08,108;CL:0000097,2.29e-08,5;CL:0002028,2.29e-08,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.30e-12;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.44e-11!80;UBERON:0002390!2.28e-10!102;UBERON:0003061!2.28e-10!102;UBERON:0001474!3.95e-10!86;UBERON:0004765!1.13e-09!101;UBERON:0001434!1.13e-09!101;UBERON:0000062!1.47e-09!511;UBERON:0007023!2.27e-09!115;UBERON:0002193!2.98e-09!112;UBERON:0002405!2.33e-08!115 | |ontology_enrichment_uberon=UBERON:0002371!8.44e-11!80;UBERON:0002390!2.28e-10!102;UBERON:0003061!2.28e-10!102;UBERON:0001474!3.95e-10!86;UBERON:0004765!1.13e-09!101;UBERON:0001434!1.13e-09!101;UBERON:0000062!1.47e-09!511;UBERON:0007023!2.27e-09!115;UBERON:0002193!2.98e-09!112;UBERON:0002405!2.33e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0006947;2.35e-07;3!UBERON:0004054;2.35e-07;3!UBERON:0001723;3.21e-07;3!UBERON:0001033;3.21e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.60e-13,76;UBERON:0001474,1.64e-12,82;UBERON:0001434,8.29e-11,100;UBERON:0004765,9.09e-11,90;UBERON:0002390,3.58e-10,98;UBERON:0003061,3.58e-10,98;UBERON:0002405,2.90e-09,93;UBERON:0002193,1.40e-08,108;UBERON:0007023,1.42e-07,114;UBERON:0006947,2.21e-07,3;UBERON:0004054,2.21e-07,3;UBERON:0001723,5.00e-07,3;UBERON:0001033,5.00e-07,3;UBERON:0010056,5.00e-07,3 | |||
|phase1_expression=0.726713517082227,0.214100523890983,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0.994192127183747,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.434021741431704,0,0,0,0.436194716338694,0,0.485168122375632,4.88100977501938,4.52284676824008,4.95530193432166,2.01384674625505,1.0246428261164,0.709446689665756,3.44745680736619,9.68227025375739,5.41705946377367,2.44715041405386,4.36649840092553,1.57306439111559,8.57034898638527,8.66508373105453,14.7047538933779,0.329851300186716,0.199463657621632,1.27867425159808,1.7412554317715,0.56738522469114,0,0.75374599577023,2.08593167368081,2.38907729175628,0.605399502633369,0,1.58231193720442,1.47878700418359,0.425208599930087,0.209658645508376,0.44931452458598,0.300353785683013,0,0.855038231223746,0.79566670879636,0.365328307529268,0,0,0.889509253863555,0,0,0,0,0.954053754535364,0.569212969109448,0,0.382273228125229,5.28685314316103,1.12101712596307,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0,0,0,1.15877215168659,0,0,0,0,0.351339142772504,0.654895377488563,0.364295288292542,0,0,0,0,0.476981248610684,0.571994910780128,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.573673241497627,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309977343527296,0,0.741800787835671,0.910161361938026,0,0,0,0,0,0,2.10333282469236,0,0.358779271377724,0.427114777637135,0,0,0,0.257640540045629,0,0,0.0974370051611986,0,0,0.161646056818812,0.355009592516614,0.201504196455281,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0.354920400119532,0.168584690078102,0,0.110293972732394,0.217879444092406,0.237270619111097,1.07865046528132,0.588664395376038,1.15424147083917,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0.148631162288728,0,0,0.141775097242386,0,0,0,2.95597942737566,0.176096868026452,20.940139669618,18.1591141305371,17.5476982462668,0.126995788584338,1.90994212779139,1.17217447210047,0,0.308482478109971,0.901029173531752,0,0,0,0,0,0,0,0,0,0,0,0,0.57191197463259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.256686072559497,0,0,0,0,0,0,2.99161459204025,1.24324654030811,0.12269149171914,0,0,0.207970861530807,0,0,0,0,0,0,0,0.921845842708516,0,0,0,0.206768026122887,0.862856803274467,1.60091336705167,0,0,0,0.496215615637554,0,0.561320188866147,0,0,0.160853921143607,1.48418066444991,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.721287081534056,0.183138929636687,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0.54907405947211,0,0,0,0,0,0,1.05650146756755,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89996871767898,0,0,0.349934720244983,0.0962221127255121,0.670302275535787,0,1.31801321087491,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0.586032717087576,0,0,0,0.47748896947538,0,1.22864280839693,0,0,0,0,0,3.58646378851925,3.31540698637377,0,0.102268682502155,0,0,0.0898683511473268,0.358042349351218,0,3.25523238601881,0,0,0.969332746095218,0.185536196323703,0,1.04171104434093,0.174919999992391,0,0,0,0,0,0,0.173624994933292,0.885741385813839,0,0,0,0,2.85201016300164,0.21787692703798,2.92789862985067,0.846452843541768,0.113942055847001,0,0.0897576444097721,0,1.27600463892768,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0.652931232636591,0.141353071433941,0,0,0.884575645033392,0,1.48260564340311,0.617819694732514,0.104421949505455,0.269604531922708,4.01288823649394,0,0,1.17398771359254,0,1.18375320854817,1.20990716048664,0,0.126373159256976,0.300646838828985,0,0,0,0,0,0,0,0.520679215005393,0.195984794828755,0.174118413160805,2.62090002363045,0,0.483781656445426,0.146178634172371,0.164230914106418,2.32773639572207,0,1.35588444468319,0,0,0.0633107959558787,0.586654148204409,0.0801588202515337,7.89776080535604,0.19980960958213,0,0.114536596165916,0.171594997861965,0.14405479798815,0.248505071130865,2.59263438078475,0,0,0,0,0,0,0,0.429765441419957,0,7.26134243307861,0.687481272035051,2.87149209830726,0.798716001995964,1.71690419254628,0.223171457441873,0.873385142327441,0,0,0.157566364614447,0.164831716762333,0.0674035438541849,0.196854963029498,0,0,0.136203406111576,0,0.137539436597234,0,2.0247650239635,11.6070293183692,0.121499113316049,0,0.0788057072991982,0.419636705079985,0.422401346077626,4.30289614398828,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0.732761168390412,0,0.129282956361551,0,0.513260513652988,0,2.56289790162467,2.98688179689365,2.48543433208317,0,0.197611631897944,0.365377795142688,0,1.08803560673895,0,0,0.327872630709804,0,0,0,0.125190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| ||
|short_description=p8@NR4A1 | |short_description=p8@NR4A1 | ||
}} | }} |
Latest revision as of 21:13, 18 September 2015
Short description: | p8@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_NR4A1_5end |
Coexpression cluster: | C1018_immature_CD14_Mast_cervical_seminal_heart_ovary |
Association with transcript: | 38bp_to_AB307717, AB464647, AB590255, BT007144, CR456704, CU677577, DQ891134, DQ894313, HQ692855_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | Q53Y00Q6IBU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.15e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.15e-16 | 42 |
granulocyte monocyte progenitor cell | 1.62e-15 | 67 |
myeloid leukocyte | 8.09e-14 | 72 |
defensive cell | 2.15e-13 | 48 |
phagocyte | 2.15e-13 | 48 |
myeloid lineage restricted progenitor cell | 4.95e-13 | 66 |
macrophage dendritic cell progenitor | 1.33e-11 | 61 |
monopoietic cell | 1.20e-09 | 59 |
monocyte | 1.20e-09 | 59 |
monoblast | 1.20e-09 | 59 |
promonocyte | 1.20e-09 | 59 |
myeloid cell | 1.26e-08 | 108 |
common myeloid progenitor | 1.26e-08 | 108 |
mast cell | 2.29e-08 | 5 |
basophil mast progenitor cell | 2.29e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.60e-13 | 76 |
bone element | 1.64e-12 | 82 |
skeletal system | 8.29e-11 | 100 |
skeletal element | 9.09e-11 | 90 |
hematopoietic system | 3.58e-10 | 98 |
blood island | 3.58e-10 | 98 |
immune system | 2.90e-09 | 93 |
hemolymphoid system | 1.40e-08 | 108 |
adult organism | 1.42e-07 | 114 |
male genital duct | 2.21e-07 | 3 |
internal male genitalia | 2.21e-07 | 3 |
tongue | 5.00e-07 | 3 |
gustatory system | 5.00e-07 | 3 |
future tongue | 5.00e-07 | 3 |