FFCP PHASE1:Hg19::chr19:52250199..52250211,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2357 | |EntrezGene=2357 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=3826 | |HGNC=3826 | ||
|TSSclassifier=strong | |||
|UniProt=P21462 | |UniProt=P21462 | ||
|association_with_transcript=35bp_to_AB463652,BT007429,CU675105,M37128_5end | |association_with_transcript=35bp_to_AB463652,BT007429,CU675105,M37128_5end | ||
|cluster_id=chr19:52250199..52250211,- | |||
|coexpression_cluster_id=C13 | |coexpression_cluster_id=C13 | ||
|description=CAGE_peak_4_at_FPR1_5end | |description=CAGE_peak_4_at_FPR1_5end | ||
|id=chr19:52250199..52250211,- | |id=chr19:52250199..52250211,- | ||
|ontology_enrichment_celltype=CL:0002057!2.78e-79!42;CL:0000860!3.49e-73!45;CL:0000766!2.75e-64!76;CL:0002194!2.24e-59!63;CL:0000576!2.24e-59!63;CL:0000040!2.24e-59!63;CL:0000559!2.24e-59!63;CL:0002009!3.51e-57!65;CL:0000839!3.09e-52!70;CL:0000557!2.49e-51!71;CL:0000763!5.12e-41!112;CL:0000049!5.12e-41!112;CL:0000738!3.85e-36!140;CL:0002087!2.20e-33!119;CL:0002031!2.00e-28!124;CL:0000037!6.54e-28!172;CL:0000566!6.54e-28!172;CL:0002032!4.59e-27!165;CL:0000837!4.59e-27!165;CL:0000988!1.47e-25!182;CL:0002393!5.45e-15!9;CL:0002397!5.45e-15!9;CL:0000094!3.22e-11!8;CL:0000775!6.03e-09!3;CL:0000081!6.59e-08!11;CL:0000134!1.13e-07!358;CL:0002320!2.85e-07!365;CL:0000875!2.90e-07!3;CL:0002396!2.90e-07!3 | |ontology_enrichment_celltype=CL:0002057!2.78e-79!42;CL:0000860!3.49e-73!45;CL:0000766!2.75e-64!76;CL:0002194!2.24e-59!63;CL:0000576!2.24e-59!63;CL:0000040!2.24e-59!63;CL:0000559!2.24e-59!63;CL:0002009!3.51e-57!65;CL:0000839!3.09e-52!70;CL:0000557!2.49e-51!71;CL:0000763!5.12e-41!112;CL:0000049!5.12e-41!112;CL:0000738!3.85e-36!140;CL:0002087!2.20e-33!119;CL:0002031!2.00e-28!124;CL:0000037!6.54e-28!172;CL:0000566!6.54e-28!172;CL:0002032!4.59e-27!165;CL:0000837!4.59e-27!165;CL:0000988!1.47e-25!182;CL:0002393!5.45e-15!9;CL:0002397!5.45e-15!9;CL:0000094!3.22e-11!8;CL:0000775!6.03e-09!3;CL:0000081!6.59e-08!11;CL:0000134!1.13e-07!358;CL:0002320!2.85e-07!365;CL:0000875!2.90e-07!3;CL:0002396!2.90e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.30e-91;33!CL:0002057;4.30e-91;33!CL:0000473;6.78e-68;39!CL:0000234;6.78e-68;39!CL:0000576;1.05e-47;48!CL:0000766;3.16e-34;69!CL:0000763;1.51e-20;100!CL:0000775;2.49e-16;3!CL:0000094;8.35e-16;8!CL:0002087;4.21e-12;104!CL:0000081;2.05e-11;11!CL:0000738;2.57e-11;136!CL:0000771;7.17e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.56e-89,42;CL:0002057,1.56e-89,42;CL:0000473,2.38e-83,48;CL:0000234,2.38e-83,48;CL:0000766,4.60e-74,72;CL:0002194,2.23e-65,59;CL:0000576,2.23e-65,59;CL:0000040,2.23e-65,59;CL:0000559,2.23e-65,59;CL:0002009,4.66e-63,61;CL:0000839,7.28e-58,66;CL:0000557,6.45e-57,67;CL:0000763,3.05e-47,108;CL:0000049,3.05e-47,108;CL:0000738,4.11e-36,136;CL:0002087,1.21e-30,115;CL:0002032,2.02e-29,161;CL:0000837,2.02e-29,161;CL:0002031,4.18e-29,120;CL:0000037,6.69e-28,168;CL:0000988,4.02e-26,177;CL:0000775,2.43e-16,3;CL:0000094,8.91e-16,8;CL:0000081,2.15e-11,11;CL:0000771,8.12e-11,2;CL:0000134,1.95e-09,354;CL:0002320,4.12e-09,361;CL:0000219,5.73e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-65;42!CL:0000049;1.46e-16;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.46e-57!102;UBERON:0003061!2.46e-57!102;UBERON:0002193!3.76e-53!112;UBERON:0002371!3.44e-44!80;UBERON:0001474!2.96e-40!86;UBERON:0004765!3.67e-34!101;UBERON:0001434!3.67e-34!101;UBERON:0002405!2.59e-33!115;UBERON:0003081!3.56e-21!216;UBERON:0002204!7.23e-16!167;UBERON:0000178!2.99e-14!15;UBERON:0000179!2.99e-14!15;UBERON:0000463!2.99e-14!15;UBERON:0002384!9.94e-07!375 | |ontology_enrichment_uberon=UBERON:0002390!2.46e-57!102;UBERON:0003061!2.46e-57!102;UBERON:0002193!3.76e-53!112;UBERON:0002371!3.44e-44!80;UBERON:0001474!2.96e-40!86;UBERON:0004765!3.67e-34!101;UBERON:0001434!3.67e-34!101;UBERON:0002405!2.59e-33!115;UBERON:0003081!3.56e-21!216;UBERON:0002204!7.23e-16!167;UBERON:0000178!2.99e-14!15;UBERON:0000179!2.99e-14!15;UBERON:0000463!2.99e-14!15;UBERON:0002384!9.94e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.21e-11;15!UBERON:0000179;4.21e-11;15!UBERON:0000463;4.21e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.31e-55,98;UBERON:0003061,1.31e-55,98;UBERON:0002193,6.02e-53,108;UBERON:0002371,1.69e-49,76;UBERON:0001474,1.91e-45,82;UBERON:0002405,2.69e-42,93;UBERON:0004765,7.15e-41,90;UBERON:0001434,3.57e-36,100;UBERON:0003081,3.22e-23,203;UBERON:0002204,4.06e-19,167;UBERON:0000926,2.38e-12,315;UBERON:0004120,2.38e-12,315;UBERON:0006603,2.38e-12,315;UBERON:0000178,4.98e-11,15;UBERON:0000179,4.98e-11,15;UBERON:0000463,4.98e-11,15;UBERON:0002384,1.14e-08,371 | |||
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| ||
|short_description=p4@FPR1 | |short_description=p4@FPR1 | ||
}} | }} |
Latest revision as of 15:55, 19 September 2015
Short description: | p4@FPR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_FPR1_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 35bp_to_AB463652, BT007429, CU675105, M37128_5end |
EntrezGene: | FPR1 |
HGNC: | 3826 |
UniProt: | P21462 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.56e-89 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.56e-89 | 42 |
defensive cell | 2.38e-83 | 48 |
phagocyte | 2.38e-83 | 48 |
myeloid leukocyte | 4.60e-74 | 72 |
monopoietic cell | 2.23e-65 | 59 |
monocyte | 2.23e-65 | 59 |
monoblast | 2.23e-65 | 59 |
promonocyte | 2.23e-65 | 59 |
macrophage dendritic cell progenitor | 4.66e-63 | 61 |
myeloid lineage restricted progenitor cell | 7.28e-58 | 66 |
granulocyte monocyte progenitor cell | 6.45e-57 | 67 |
myeloid cell | 3.05e-47 | 108 |
common myeloid progenitor | 3.05e-47 | 108 |
leukocyte | 4.11e-36 | 136 |
nongranular leukocyte | 1.21e-30 | 115 |
hematopoietic oligopotent progenitor cell | 2.02e-29 | 161 |
hematopoietic multipotent progenitor cell | 2.02e-29 | 161 |
hematopoietic lineage restricted progenitor cell | 4.18e-29 | 120 |
hematopoietic stem cell | 6.69e-28 | 168 |
hematopoietic cell | 4.02e-26 | 177 |
neutrophil | 2.43e-16 | 3 |
granulocyte | 8.91e-16 | 8 |
blood cell | 2.15e-11 | 11 |
eosinophil | 8.12e-11 | 2 |
mesenchymal cell | 1.95e-09 | 354 |
connective tissue cell | 4.12e-09 | 361 |
motile cell | 5.73e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.31e-55 | 98 |
blood island | 1.31e-55 | 98 |
hemolymphoid system | 6.02e-53 | 108 |
bone marrow | 1.69e-49 | 76 |
bone element | 1.91e-45 | 82 |
immune system | 2.69e-42 | 93 |
skeletal element | 7.15e-41 | 90 |
skeletal system | 3.57e-36 | 100 |
lateral plate mesoderm | 3.22e-23 | 203 |
musculoskeletal system | 4.06e-19 | 167 |
mesoderm | 2.38e-12 | 315 |
mesoderm-derived structure | 2.38e-12 | 315 |
presumptive mesoderm | 2.38e-12 | 315 |
blood | 4.98e-11 | 15 |
haemolymphatic fluid | 4.98e-11 | 15 |
organism substance | 4.98e-11 | 15 |
connective tissue | 1.14e-08 | 371 |