FFCP PHASE1:Hg19::chr22:39850516..39850528,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr22:39850516..39850528,+ | |||
|coexpression_cluster_id=C33 | |coexpression_cluster_id=C33 | ||
|description=CAGE_peak_at_chr22:39850516..39850528,+ | |description=CAGE_peak_at_chr22:39850516..39850528,+ | ||
|id=chr22:39850516..39850528,+ | |id=chr22:39850516..39850528,+ | ||
|ontology_enrichment_celltype=CL:0002537!3.03e-08!5 | |ontology_enrichment_celltype=CL:0002537!3.03e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000764;7.10e-28;2!CL:0000558;7.10e-28;2!CL:0000785;1.23e-14;1!CL:0000819;1.23e-14;1!CL:0002537;1.80e-11;5!CL:0000763;5.39e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,7.10e-28,2;CL:0000765,7.10e-28,2;CL:0000050,7.10e-28,2;CL:0000038,7.10e-28,2;CL:0000558,7.10e-28,2;CL:0000547,7.10e-28,2;CL:0000549,7.10e-28,2;CL:0000550,7.10e-28,2;CL:0000552,7.10e-28,2;CL:0000819,1.23e-14,1;CL:0000763,1.64e-13,108;CL:0000049,1.64e-13,108;CL:0002032,2.16e-12,161;CL:0000837,2.16e-12,161;CL:0000037,8.13e-12,168;CL:0002537,1.67e-11,5;CL:0000988,3.85e-11,177;CL:0000785,5.74e-08,2;CL:0000955,5.74e-08,2;CL:0000818,5.74e-08,2;CL:0000954,5.74e-08,2;CL:0000816,5.74e-08,2;CL:0000134,8.46e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000954;5.74e-08;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:8692;1.68e-19;31!DOID:8552;6.66e-15;1!DOID:0060073;1.23e-14;1!DOID:8675;1.23e-14;1!DOID:2531;1.76e-12;51!DOID:0060083;1.76e-12;51!DOID:1240;7.02e-11;39!DOID:1036;1.68e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.97e-20,31;DOID:2531,4.50e-20,51;DOID:0060083,4.50e-20,51;DOID:1240,3.81e-16,39;DOID:8552,6.22e-15,1;DOID:0060073,1.23e-14,1;DOID:8675,1.23e-14,1;DOID:1036,1.82e-07,8;DOID:0050686,8.38e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.56e-14!115;UBERON:0001049!3.83e-10!57;UBERON:0005068!3.83e-10!57;UBERON:0006241!3.83e-10!57;UBERON:0007135!3.83e-10!57;UBERON:0002780!9.82e-10!41;UBERON:0001890!9.82e-10!41;UBERON:0006240!9.82e-10!41;UBERON:0002616!1.34e-09!59;UBERON:0003080!2.04e-09!42;UBERON:0000955!3.28e-09!69;UBERON:0006238!3.28e-09!69;UBERON:0001950!1.97e-08!20;UBERON:0002791!4.40e-08!33;UBERON:0005743!4.79e-08!86;UBERON:0001017!7.18e-08!82;UBERON:0002020!8.82e-08!34;UBERON:0003528!8.82e-08!34;UBERON:0001893!9.07e-08!34;UBERON:0002619!1.59e-07!22;UBERON:0000073!8.70e-07!94;UBERON:0001016!8.70e-07!94 | |ontology_enrichment_uberon=UBERON:0007023!6.56e-14!115;UBERON:0001049!3.83e-10!57;UBERON:0005068!3.83e-10!57;UBERON:0006241!3.83e-10!57;UBERON:0007135!3.83e-10!57;UBERON:0002780!9.82e-10!41;UBERON:0001890!9.82e-10!41;UBERON:0006240!9.82e-10!41;UBERON:0002616!1.34e-09!59;UBERON:0003080!2.04e-09!42;UBERON:0000955!3.28e-09!69;UBERON:0006238!3.28e-09!69;UBERON:0001950!1.97e-08!20;UBERON:0002791!4.40e-08!33;UBERON:0005743!4.79e-08!86;UBERON:0001017!7.18e-08!82;UBERON:0002020!8.82e-08!34;UBERON:0003528!8.82e-08!34;UBERON:0001893!9.07e-08!34;UBERON:0002619!1.59e-07!22;UBERON:0000073!8.70e-07!94;UBERON:0001016!8.70e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;1.88e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,1.78e-08,7;UBERON:0004871,1.60e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,1.57345710739562,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,7.83631062717712,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26223703950243,6.53588627562251,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0.443430153536676,0.229723400206959,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,5.01131113011436,2.46174797895425,8.65458171123146,0,2.81974010175699,0,0.293016358543788,0,0,0,0.47748896947538,1.78178808499583,3.37876772309155,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0.638002319463839,0,0,0,0,6.98089063980657,0,0,0,0,3.01979500062719,0,0.163232808159148,0,0,0,0,0,0,0,0,0.337005664903385,0,0.234264445725339,3.28418620588199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,0.195984794828755,0,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0.391102765469606,0,0.426905989478705,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0.599037001496973,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,1.39557285273876,0,0,0,0,0.387848869084652,0,0,0,0,0.314408610199332,0,0,0,1.94868157409433,0,0,0.2506898940227,0.306345576763462,0,0,0,0.244052529803926,0,0,0,0.124192805882767,0,0,0,0,0.235265819698172,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.317079050969534,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0.0679697329768317,0.328863867814245,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.782988022584546,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0,0,0.573358332605805,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.413731983447581,0.213233981900981,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.0717222053926763,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,1.57345710739562,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,7.83631062717712,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.26223703950243,6.53588627562251,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0.443430153536676,0.229723400206959,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,5.01131113011436,2.46174797895425,8.65458171123146,0,2.81974010175699,0,0.293016358543788,0,0,0,0.47748896947538,1.78178808499583,3.37876772309155,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0.638002319463839,0,0,0,0,6.98089063980657,0,0,0,0,3.01979500062719,0,0.163232808159148,0,0,0,0,0,0,0,0,0.337005664903385,0,0.234264445725339,3.28418620588199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,0.195984794828755,0,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0.391102765469606,0,0.426905989478705,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0.599037001496973,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,1.39557285273876,0,0,0,0,0.387848869084652,0,0,0,0,0.314408610199332,0,0,0,1.94868157409433,0,0,0.2506898940227,0.306345576763462,0,0,0,0.244052529803926,0,0,0,0.124192805882767,0,0,0,0,0.235265819698172,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.317079050969534,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0.0679697329768317,0.328863867814245,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.782988022584546,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0,0,0.573358332605805,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.413731983447581,0.213233981900981,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0.0717222053926763,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr22:39850516..39850528,+ | |short_description=p@chr22:39850516..39850528,+ | ||
}} | }} |
Latest revision as of 21:24, 28 July 2015
Short description: | p@chr22:39850516..39850528, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:39850516..39850528, + |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 7.10e-28 | 2 |
erythroblast | 7.10e-28 | 2 |
megakaryocyte-erythroid progenitor cell | 7.10e-28 | 2 |
erythroid progenitor cell | 7.10e-28 | 2 |
reticulocyte | 7.10e-28 | 2 |
proerythroblast | 7.10e-28 | 2 |
basophilic erythroblast | 7.10e-28 | 2 |
polychromatophilic erythroblast | 7.10e-28 | 2 |
orthochromatic erythroblast | 7.10e-28 | 2 |
B-1 B cell | 1.23e-14 | 1 |
myeloid cell | 1.64e-13 | 108 |
common myeloid progenitor | 1.64e-13 | 108 |
hematopoietic oligopotent progenitor cell | 2.16e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.16e-12 | 161 |
hematopoietic stem cell | 8.13e-12 | 168 |
amnion mesenchymal stem cell | 1.67e-11 | 5 |
hematopoietic cell | 3.85e-11 | 177 |
mature B cell | 5.74e-08 | 2 |
pre-B-II cell | 5.74e-08 | 2 |
transitional stage B cell | 5.74e-08 | 2 |
small pre-B-II cell | 5.74e-08 | 2 |
immature B cell | 5.74e-08 | 2 |
mesenchymal cell | 8.46e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
amnion | 1.78e-08 | 7 |
somatic layer of lateral plate mesoderm | 1.60e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.97e-20 | 31 |
hematologic cancer | 4.50e-20 | 51 |
immune system cancer | 4.50e-20 | 51 |
leukemia | 3.81e-16 | 39 |
chronic myeloid leukemia | 6.22e-15 | 1 |
lymphatic system cancer | 1.23e-14 | 1 |
lymphosarcoma | 1.23e-14 | 1 |
chronic leukemia | 1.82e-07 | 8 |
organ system cancer | 8.38e-07 | 137 |