FFCP PHASE1:Hg19::chr2:188420652..188420665,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:188420652..188420665,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_at_chr2:188420652..188420665,+ | |description=CAGE_peak_at_chr2:188420652..188420665,+ | ||
|id=chr2:188420652..188420665,+ | |id=chr2:188420652..188420665,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.12e-64!7;CL:0000586!1.12e-64!7;CL:0002322!6.39e-07!5 | |ontology_enrichment_celltype=CL:0000039!1.12e-64!7;CL:0000586!1.12e-64!7;CL:0002322!6.39e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.31e-63;7!CL:0000586;1.31e-63;7!CL:0000138;1.22e-09;6!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.31e-63,7;CL:0000586,1.31e-63,7;CL:0000058,1.22e-09,6;CL:0000138,1.22e-09,6;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.56e-45;10!UBERON:0005564;6.56e-45;10 | |||
|ontology_enrichment_disease=DOID:3371!7.48e-30!1;DOID:4549!7.48e-30!1;DOID:5861!7.48e-30!1;DOID:6496!7.48e-30!1;DOID:3095!4.38e-21!22;DOID:2994!4.38e-21!22 | |ontology_enrichment_disease=DOID:3371!7.48e-30!1;DOID:4549!7.48e-30!1;DOID:5861!7.48e-30!1;DOID:6496!7.48e-30!1;DOID:3095!4.38e-21!22;DOID:2994!4.38e-21!22 | ||
|ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:3095;4.90e-21;22!DOID:2994;4.90e-21;22!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.46e-50,1;DOID:4549,1.46e-50,1;DOID:5861,1.46e-50,1;DOID:6496,1.46e-50,1;DOID:3095,4.90e-21,22;DOID:2994,4.90e-21,22;DOID:201,1.22e-09,6;DOID:0060100,1.22e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.06e-56!8;UBERON:0003135!1.83e-41!11;UBERON:0000991!4.66e-22!21;UBERON:0009196!4.66e-22!21;UBERON:0009117!4.66e-22!21;UBERON:0005564!4.66e-22!21;UBERON:0004176!4.38e-21!22;UBERON:0003101!4.38e-21!22;UBERON:0000079!4.38e-21!22;UBERON:0002418!6.73e-11!3;UBERON:0004755!6.73e-11!3;UBERON:0002323!2.27e-10!46;UBERON:0003133!5.88e-10!48;UBERON:0004458!9.18e-10!49;UBERON:0005156!3.49e-08!59;UBERON:0000990!3.49e-08!59;UBERON:0003886!1.09e-07!63;UBERON:0002553!5.84e-07!70 | |ontology_enrichment_uberon=UBERON:0000473!1.06e-56!8;UBERON:0003135!1.83e-41!11;UBERON:0000991!4.66e-22!21;UBERON:0009196!4.66e-22!21;UBERON:0009117!4.66e-22!21;UBERON:0005564!4.66e-22!21;UBERON:0004176!4.38e-21!22;UBERON:0003101!4.38e-21!22;UBERON:0000079!4.38e-21!22;UBERON:0002418!6.73e-11!3;UBERON:0004755!6.73e-11!3;UBERON:0002323!2.27e-10!46;UBERON:0003133!5.88e-10!48;UBERON:0004458!9.18e-10!49;UBERON:0005156!3.49e-08!59;UBERON:0000990!3.49e-08!59;UBERON:0003886!1.09e-07!63;UBERON:0002553!5.84e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.04e-56;8!UBERON:0003135;6.14e-41;11!UBERON:0000991;5.49e-22;21!UBERON:0003101;4.90e-21;22!UBERON:0000079;4.90e-21;22!UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0002323;1.06e-10;45!UBERON:0003133;6.67e-10;44!UBERON:0000922;1.32e-08;49!UBERON:0002553;2.57e-07;52!UBERON:0005156;2.89e-07;59!UBERON:0000990;2.89e-07;59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.04e-56,8;UBERON:0003135,6.14e-41,11;UBERON:0000991,5.49e-22,21;UBERON:0009196,5.49e-22,21;UBERON:0009117,5.49e-22,21;UBERON:0005564,5.49e-22,21;UBERON:0004176,4.90e-21,22;UBERON:0003101,4.90e-21,22;UBERON:0000079,4.90e-21,22;UBERON:0002418,6.76e-18,3;UBERON:0004755,6.76e-18,3;UBERON:0002323,1.44e-10,46;UBERON:0003133,3.64e-10,48;UBERON:0004458,5.64e-10,49;UBERON:0003886,3.93e-09,54;UBERON:0005156,1.98e-08,59;UBERON:0000990,1.98e-08,59;UBERON:0002553,3.51e-08,61 | |||
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|short_description=p@chr2:188420652..188420665,+ | |short_description=p@chr2:188420652..188420665,+ | ||
}} | }} |
Latest revision as of 04:12, 29 July 2015
Short description: | p@chr2:188420652..188420665, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:188420652..188420665, + |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.31e-63 | 7 |
germ cell | 1.31e-63 | 7 |
chondroblast | 1.22e-09 | 6 |
chondrocyte | 1.22e-09 | 6 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
testis | 8.04e-56 | 8 |
male reproductive organ | 6.14e-41 | 11 |
gonad | 5.49e-22 | 21 |
indifferent external genitalia | 5.49e-22 | 21 |
indifferent gonad | 5.49e-22 | 21 |
gonad primordium | 5.49e-22 | 21 |
external genitalia | 4.90e-21 | 22 |
male organism | 4.90e-21 | 22 |
male reproductive system | 4.90e-21 | 22 |
cartilage tissue | 6.76e-18 | 3 |
skeletal tissue | 6.76e-18 | 3 |
body cavity | 1.44e-10 | 46 |
reproductive organ | 3.64e-10 | 48 |
body cavity or lining | 5.64e-10 | 49 |
body cavity precursor | 3.93e-09 | 54 |
reproductive structure | 1.98e-08 | 59 |
reproductive system | 1.98e-08 | 59 |
anatomical cavity | 3.51e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.46e-50 | 1 |
extraosseous chondrosarcoma | 1.46e-50 | 1 |
myxoid chondrosarcoma | 1.46e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 1.46e-50 | 1 |
germ cell and embryonal cancer | 4.90e-21 | 22 |
germ cell cancer | 4.90e-21 | 22 |
connective tissue cancer | 1.22e-09 | 6 |
musculoskeletal system cancer | 1.22e-09 | 6 |