FFCP PHASE1:Hg19::chr2:21233710..21233724,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=P04114 | |UniProt=P04114 | ||
|association_with_transcript=206bp_to_X03326_5end | |association_with_transcript=206bp_to_X03326_5end | ||
|cluster_id=chr2:21233710..21233724,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_39_at_APOB_5end | |description=CAGE_peak_39_at_APOB_5end | ||
|id=chr2:21233710..21233724,- | |id=chr2:21233710..21233724,- | ||
|ontology_enrichment_celltype=CL:0000181!2.04e-35!12;CL:0000417!2.04e-35!12;CL:0000668!2.04e-35!12;CL:0000414!2.04e-35!12;CL:0000412!2.04e-35!12;CL:0000182!2.04e-35!12;CL:0000223!9.44e-11!59;CL:0002563!2.06e-09!4 | |ontology_enrichment_celltype=CL:0000181!2.04e-35!12;CL:0000417!2.04e-35!12;CL:0000668!2.04e-35!12;CL:0000414!2.04e-35!12;CL:0000412!2.04e-35!12;CL:0000182!2.04e-35!12;CL:0000223!9.44e-11!59;CL:0002563!2.06e-09!4 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.81e-42;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.36e-42,12;CL:0000223,1.21e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.73e-32;11!UBERON:0009497;2.38e-27;13!UBERON:0000358;1.24e-15;1!UBERON:0001041;6.88e-12;30!UBERON:0003104;1.71e-11;31 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.42e-36!19;UBERON:0006925!1.42e-36!19;UBERON:0008836!1.42e-36!19;UBERON:0008835!2.00e-31!22;UBERON:0003894!2.00e-31!22;UBERON:0009854!5.24e-30!23;UBERON:0007499!1.65e-27!25;UBERON:0009497!1.65e-27!25;UBERON:0000015!1.65e-27!25;UBERON:0002423!1.65e-27!25;UBERON:0006235!1.65e-27!25;UBERON:0004161!1.65e-27!25;UBERON:0005057!2.10e-26!26;UBERON:0009856!2.10e-26!26;UBERON:0002365!6.03e-22!31;UBERON:0002330!6.03e-22!31;UBERON:0002368!2.71e-19!35;UBERON:0003929!5.92e-18!54;UBERON:0000949!1.01e-14!45;UBERON:0004921!1.32e-12!129;UBERON:0004185!1.32e-12!129;UBERON:0005172!8.27e-12!55;UBERON:0005173!8.27e-12!55;UBERON:0005911!3.23e-11!82;UBERON:0002530!6.41e-11!59;UBERON:0000160!1.21e-10!27;UBERON:0002417!1.61e-10!61;UBERON:0000916!1.61e-10!61;UBERON:0001007!4.54e-10!155;UBERON:0001555!4.54e-10!155;UBERON:0007026!4.54e-10!155;UBERON:0001242!2.06e-09!4;UBERON:0001262!2.06e-09!4;UBERON:0004786!2.06e-09!4;UBERON:0004808!2.06e-09!4;UBERON:0001277!2.06e-09!4;UBERON:0004119!5.04e-09!169;UBERON:0000925!5.04e-09!169;UBERON:0006595!5.04e-09!169;UBERON:0005409!3.54e-08!35;UBERON:0003350!1.06e-07!5 | |ontology_enrichment_uberon=UBERON:0002107!1.42e-36!19;UBERON:0006925!1.42e-36!19;UBERON:0008836!1.42e-36!19;UBERON:0008835!2.00e-31!22;UBERON:0003894!2.00e-31!22;UBERON:0009854!5.24e-30!23;UBERON:0007499!1.65e-27!25;UBERON:0009497!1.65e-27!25;UBERON:0000015!1.65e-27!25;UBERON:0002423!1.65e-27!25;UBERON:0006235!1.65e-27!25;UBERON:0004161!1.65e-27!25;UBERON:0005057!2.10e-26!26;UBERON:0009856!2.10e-26!26;UBERON:0002365!6.03e-22!31;UBERON:0002330!6.03e-22!31;UBERON:0002368!2.71e-19!35;UBERON:0003929!5.92e-18!54;UBERON:0000949!1.01e-14!45;UBERON:0004921!1.32e-12!129;UBERON:0004185!1.32e-12!129;UBERON:0005172!8.27e-12!55;UBERON:0005173!8.27e-12!55;UBERON:0005911!3.23e-11!82;UBERON:0002530!6.41e-11!59;UBERON:0000160!1.21e-10!27;UBERON:0002417!1.61e-10!61;UBERON:0000916!1.61e-10!61;UBERON:0001007!4.54e-10!155;UBERON:0001555!4.54e-10!155;UBERON:0007026!4.54e-10!155;UBERON:0001242!2.06e-09!4;UBERON:0001262!2.06e-09!4;UBERON:0004786!2.06e-09!4;UBERON:0004808!2.06e-09!4;UBERON:0001277!2.06e-09!4;UBERON:0004119!5.04e-09!169;UBERON:0000925!5.04e-09!169;UBERON:0006595!5.04e-09!169;UBERON:0005409!3.54e-08!35;UBERON:0003350!1.06e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.56e-47;19!UBERON:0006925;2.56e-47;19!UBERON:0002423;7.55e-36;25!UBERON:0002365;1.02e-27;31!UBERON:0002330;1.02e-27;31!UBERON:0002108;7.49e-26;4!UBERON:0002368;1.88e-24;33!UBERON:0000949;6.80e-18;43!UBERON:0005172;1.00e-10;52!UBERON:0005173;1.00e-10;52!UBERON:0001007;3.36e-10;81!UBERON:0002417;1.98e-09;58!UBERON:0000916;1.98e-09;58!UBERON:0002530;2.50e-09;57!UBERON:0000160;1.26e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.78e-47,19;UBERON:0006925,1.78e-47,19;UBERON:0008836,1.78e-47,19;UBERON:0008835,6.13e-41,22;UBERON:0003894,6.13e-41,22;UBERON:0009854,3.87e-39,23;UBERON:0007499,5.73e-36,25;UBERON:0009497,5.73e-36,25;UBERON:0000015,5.73e-36,25;UBERON:0002423,5.73e-36,25;UBERON:0006235,5.73e-36,25;UBERON:0004161,5.73e-36,25;UBERON:0009856,1.45e-34,26;UBERON:0002365,6.63e-29,31;UBERON:0002330,6.63e-29,31;UBERON:0002108,8.51e-26,4;UBERON:0002368,1.54e-25,35;UBERON:0000949,9.92e-20,45;UBERON:0003929,2.47e-16,54;UBERON:0005172,2.47e-16,54;UBERON:0005173,2.47e-16,54;UBERON:0002530,6.80e-15,59;UBERON:0002417,1.24e-14,60;UBERON:0000916,1.24e-14,60;UBERON:0004921,2.29e-13,118;UBERON:0001007,1.13e-10,145;UBERON:0001555,1.13e-10,145;UBERON:0007026,1.13e-10,145;UBERON:0005911,1.62e-10,82;UBERON:0001041,7.19e-10,87;UBERON:0004119,1.46e-09,160;UBERON:0000925,1.46e-09,160;UBERON:0006595,1.46e-09,160;UBERON:0005177,2.14e-08,101;UBERON:0011216,9.40e-08,223;UBERON:0000160,1.30e-07,17;UBERON:0009569,1.71e-07,112;UBERON:0003914,3.86e-07,117;UBERON:0005256,8.17e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0132552232746,3.9313088667105,2.36315962672562,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,2.52106183383116,2.55489160981616,1.88729922791718,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0132552232746,3.9313088667105,2.36315962672562,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,2.52106183383116,2.55489160981616,1.88729922791718,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p39@APOB | |short_description=p39@APOB | ||
}} | }} |
Latest revision as of 23:33, 19 September 2015
Short description: | p39@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_39_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 206bp_to_X03326_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.36e-42 | 12 |
endodermal cell | 1.21e-08 | 58 |