FFCP PHASE1:Hg19::chr2:88425833..88425845,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-444bp_to_BX641099_5end | |association_with_transcript=-444bp_to_BX641099_5end | ||
|cluster_id=chr2:88425833..88425845,- | |||
|coexpression_cluster_id=C1489 | |coexpression_cluster_id=C1489 | ||
|description=CAGE_peak_1_at_BX641099_5end | |description=CAGE_peak_1_at_BX641099_5end | ||
|id=chr2:88425833..88425845,- | |id=chr2:88425833..88425845,- | ||
|ontology_enrichment_celltype=CL:0000181!2.28e-22!12;CL:0000417!2.28e-22!12;CL:0000668!2.28e-22!12;CL:0000414!2.28e-22!12;CL:0000412!2.28e-22!12;CL:0000182!2.28e-22!12;CL:0000223!7.58e-09!59;CL:0002563!4.15e-08!4 | |ontology_enrichment_celltype=CL:0000181!2.28e-22!12;CL:0000417!2.28e-22!12;CL:0000668!2.28e-22!12;CL:0000414!2.28e-22!12;CL:0000412!2.28e-22!12;CL:0000182!2.28e-22!12;CL:0000223!7.58e-09!59;CL:0002563!4.15e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.34e-34;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,8.88e-35,12;CL:0000223,6.16e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.93e-26;11!UBERON:0009497;3.13e-22;13!UBERON:0001041;1.28e-09;30!UBERON:0003104;2.66e-09;31 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!3.06e-25!23;UBERON:0000160!6.39e-25!27;UBERON:0002107!1.55e-24!19;UBERON:0006925!1.55e-24!19;UBERON:0008836!1.55e-24!19;UBERON:0000059!7.93e-24!11;UBERON:0005409!5.84e-23!35;UBERON:0009856!3.57e-22!26;UBERON:0005057!4.16e-22!26;UBERON:0008835!4.81e-21!22;UBERON:0003894!4.81e-21!22;UBERON:0001155!1.44e-20!9;UBERON:0004921!2.72e-19!129;UBERON:0004185!2.72e-19!129;UBERON:0007499!2.17e-18!25;UBERON:0009497!2.17e-18!25;UBERON:0000015!2.17e-18!25;UBERON:0002423!2.17e-18!25;UBERON:0006235!2.17e-18!25;UBERON:0004161!2.17e-18!25;UBERON:0001007!1.85e-15!155;UBERON:0001555!1.85e-15!155;UBERON:0007026!1.85e-15!155;UBERON:0003929!7.97e-15!54;UBERON:0002365!1.28e-14!31;UBERON:0002330!1.28e-14!31;UBERON:0004119!7.04e-14!169;UBERON:0000925!7.04e-14!169;UBERON:0006595!7.04e-14!169;UBERON:0004907!1.32e-13!5;UBERON:0002368!8.04e-13!35;UBERON:0005172!5.34e-12!55;UBERON:0005173!5.34e-12!55;UBERON:0002417!1.17e-10!61;UBERON:0000916!1.17e-10!61;UBERON:0000949!1.01e-09!45;UBERON:0005911!4.07e-09!82;UBERON:0002530!5.56e-09!59;UBERON:0001154!1.42e-08!1;UBERON:0001153!1.42e-08!1;UBERON:0001052!3.59e-08!4;UBERON:0001242!4.15e-08!4;UBERON:0001262!4.15e-08!4;UBERON:0004786!4.15e-08!4;UBERON:0004808!4.15e-08!4;UBERON:0001277!4.15e-08!4;UBERON:0000077!2.85e-07!130 | |ontology_enrichment_uberon=UBERON:0009854!3.06e-25!23;UBERON:0000160!6.39e-25!27;UBERON:0002107!1.55e-24!19;UBERON:0006925!1.55e-24!19;UBERON:0008836!1.55e-24!19;UBERON:0000059!7.93e-24!11;UBERON:0005409!5.84e-23!35;UBERON:0009856!3.57e-22!26;UBERON:0005057!4.16e-22!26;UBERON:0008835!4.81e-21!22;UBERON:0003894!4.81e-21!22;UBERON:0001155!1.44e-20!9;UBERON:0004921!2.72e-19!129;UBERON:0004185!2.72e-19!129;UBERON:0007499!2.17e-18!25;UBERON:0009497!2.17e-18!25;UBERON:0000015!2.17e-18!25;UBERON:0002423!2.17e-18!25;UBERON:0006235!2.17e-18!25;UBERON:0004161!2.17e-18!25;UBERON:0001007!1.85e-15!155;UBERON:0001555!1.85e-15!155;UBERON:0007026!1.85e-15!155;UBERON:0003929!7.97e-15!54;UBERON:0002365!1.28e-14!31;UBERON:0002330!1.28e-14!31;UBERON:0004119!7.04e-14!169;UBERON:0000925!7.04e-14!169;UBERON:0006595!7.04e-14!169;UBERON:0004907!1.32e-13!5;UBERON:0002368!8.04e-13!35;UBERON:0005172!5.34e-12!55;UBERON:0005173!5.34e-12!55;UBERON:0002417!1.17e-10!61;UBERON:0000916!1.17e-10!61;UBERON:0000949!1.01e-09!45;UBERON:0005911!4.07e-09!82;UBERON:0002530!5.56e-09!59;UBERON:0001154!1.42e-08!1;UBERON:0001153!1.42e-08!1;UBERON:0001052!3.59e-08!4;UBERON:0001242!4.15e-08!4;UBERON:0001262!4.15e-08!4;UBERON:0004786!4.15e-08!4;UBERON:0004808!4.15e-08!4;UBERON:0001277!4.15e-08!4;UBERON:0000077!2.85e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.98e-38;19!UBERON:0006925;1.98e-38;19!UBERON:0002423;4.81e-29;25!UBERON:0002365;2.06e-22;31!UBERON:0002330;2.06e-22;31!UBERON:0002108;9.01e-22;4!UBERON:0002368;8.27e-20;33!UBERON:0000160;1.87e-16;17!UBERON:0000949;1.72e-14;43!UBERON:0005409;7.19e-13;22!UBERON:0001007;2.54e-09;81!UBERON:0005172;9.78e-09;52!UBERON:0005173;9.78e-09;52!UBERON:0004921;6.91e-08;33!UBERON:0002417;9.80e-08;58!UBERON:0000916;9.80e-08;58!UBERON:0002530;1.32e-07;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.40e-38,19;UBERON:0006925,1.40e-38,19;UBERON:0008836,1.40e-38,19;UBERON:0008835,3.15e-33,22;UBERON:0003894,3.15e-33,22;UBERON:0009854,9.39e-32,23;UBERON:0007499,3.71e-29,25;UBERON:0009497,3.71e-29,25;UBERON:0000015,3.71e-29,25;UBERON:0002423,3.71e-29,25;UBERON:0006235,3.71e-29,25;UBERON:0004161,3.71e-29,25;UBERON:0009856,5.22e-28,26;UBERON:0002365,2.25e-23,31;UBERON:0002330,2.25e-23,31;UBERON:0002108,9.68e-22,4;UBERON:0002368,1.29e-20,35;UBERON:0000160,1.93e-16,17;UBERON:0000949,7.36e-16,45;UBERON:0004921,5.11e-15,118;UBERON:0003929,4.44e-13,54;UBERON:0005172,4.44e-13,54;UBERON:0005173,4.44e-13,54;UBERON:0001007,6.47e-12,145;UBERON:0001555,6.47e-12,145;UBERON:0007026,6.47e-12,145;UBERON:0002530,6.71e-12,59;UBERON:0002417,1.10e-11,60;UBERON:0000916,1.10e-11,60;UBERON:0005409,2.29e-11,25;UBERON:0004119,1.23e-10,160;UBERON:0000925,1.23e-10,160;UBERON:0006595,1.23e-10,160;UBERON:0005911,2.57e-08,82;UBERON:0011216,2.73e-08,223;UBERON:0001041,8.68e-08,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,2.94848165003288,14.7697476670351,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.67276215673701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,12.9384051040206,0.796118080530053,21.9970852176105,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96957955768059,1.97798060114799,1.75249214020881,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46552233678082,17.2258955585888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,3.27839340755936,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4079531339648,2.94848165003288,14.7697476670351,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.67276215673701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,12.9384051040206,0.796118080530053,21.9970852176105,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96957955768059,1.97798060114799,1.75249214020881,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46552233678082,17.2258955585888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,3.27839340755936,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@BX641099 | |short_description=p1@BX641099 | ||
}} | }} |
Latest revision as of 13:01, 29 July 2015
Short description: | p1@BX641099 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BX641099_5end |
Coexpression cluster: | C1489_colon_Hepatocyte_liver_small_adenocarcinoma_hepatocellular_duodenum |
Association with transcript: | -444bp_to_BX641099_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 8.88e-35 | 12 |
endodermal cell | 6.16e-07 | 58 |