FFCP PHASE1:Hg19::chr19:3185894..3185899,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:3185894..3185899,+
|short_description=p3@NCLN
|description=CAGE_peak_3_at_NCLN_5end
|association_with_transcript=19bp_to_ENST00000246117,NM_020170,uc002lx...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56926 | |EntrezGene=56926 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26923 | |HGNC=26923 | ||
|TSSclassifier=strong | |||
|UniProt=Q969V3 | |UniProt=Q969V3 | ||
|association_with_transcript=19bp_to_ENST00000246117,NM_020170,uc002lxh.1,uc002lxi.2_5end | |||
|cluster_id=chr19:3185894..3185899,+ | |||
|description=CAGE_peak_3_at_NCLN_5end | |||
|id=chr19:3185894..3185899,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.79e-08!180;CL:0000183!1.08e-07!59;CL:0002371!4.35e-07!591;CL:0000680!5.94e-07!57;CL:0000056!5.94e-07!57;CL:0000355!5.94e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.34e-08;15!CL:1000497;4.36e-07;17!CL:0002518;4.36e-07;17!CL:0002681;6.30e-07;12!CL:0002584;6.30e-07;12!CL:1000507;9.67e-07;10!CL:1000494;9.67e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.52e-08,121;CL:1000449,5.41e-08,15;CL:0000192,6.59e-08,43;CL:0000514,6.59e-08,43;CL:1000497,8.87e-07,17;CL:0002518,8.87e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.92e-08!82;UBERON:0000119!1.49e-07!312;UBERON:0000483!1.71e-07!309;UBERON:0005256!2.75e-07!143;UBERON:0004290!5.84e-07!70;UBERON:0000914!7.59e-07!83;UBERON:0002329!7.59e-07!83;UBERON:0003077!7.59e-07!83;UBERON:0003059!7.59e-07!83;UBERON:0007282!7.59e-07!83;UBERON:0009618!7.59e-07!83;UBERON:0007285!7.59e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.34e-08;15!UBERON:0004819;2.34e-08;15!UBERON:0001285;2.34e-08;15!UBERON:0007684;2.34e-08;15!UBERON:0001225;6.30e-07;12!UBERON:0008987;6.30e-07;12!UBERON:0003891;9.51e-07;4!UBERON:0004211;9.67e-07;10!UBERON:0009773;9.67e-07;10!UBERON:0001231;9.67e-07;10!UBERON:0004810;9.67e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.36e-09,78;UBERON:0000486,4.74e-08,83;UBERON:0004211,5.41e-08,15;UBERON:0009773,5.41e-08,15;UBERON:0001231,5.41e-08,15;UBERON:0001285,5.41e-08,15;UBERON:0007684,5.41e-08,15;UBERON:0004208,5.41e-08,15;UBERON:0000483,1.03e-07,306;UBERON:0000119,1.81e-07,309;UBERON:0003914,2.14e-07,117;UBERON:0006555,2.40e-07,16;UBERON:0004819,2.40e-07,16;UBERON:0007500,3.10e-07,59;UBERON:0001981,3.10e-07,59;UBERON:0004537,3.10e-07,59;UBERON:0006965,3.10e-07,59;UBERON:0002329,3.51e-07,71;UBERON:0003059,3.51e-07,71;UBERON:0007282,3.51e-07,71;UBERON:0004290,3.51e-07,71;UBERON:0009618,3.51e-07,71;UBERON:0003077,5.46e-07,72;UBERON:0007285,5.46e-07,72;UBERON:0007524,8.37e-07,73 | |||
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| ||
|short_description=p3@NCLN | |||
}} | }} |
Latest revision as of 05:23, 17 September 2015
Short description: | p3@NCLN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NCLN_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000246117, NM_020170, uc002lxh.1, uc002lxi.2_5end |
EntrezGene: | NCLN |
HGNC: | 26923 |
UniProt: | Q969V3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.52e-08 | 121 |
epithelial cell of nephron | 5.41e-08 | 15 |
smooth muscle cell | 6.59e-08 | 43 |
smooth muscle myoblast | 6.59e-08 | 43 |
kidney cell | 8.87e-07 | 17 |
kidney epithelial cell | 8.87e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.36e-09 | 78 |
multilaminar epithelium | 4.74e-08 | 83 |
nephron epithelium | 5.41e-08 | 15 |
renal tubule | 5.41e-08 | 15 |
nephron tubule | 5.41e-08 | 15 |
nephron | 5.41e-08 | 15 |
uriniferous tubule | 5.41e-08 | 15 |
nephrogenic mesenchyme | 5.41e-08 | 15 |
epithelium | 1.03e-07 | 306 |
cell layer | 1.81e-07 | 309 |
epithelial tube | 2.14e-07 | 117 |
excretory tube | 2.40e-07 | 16 |
kidney epithelium | 2.40e-07 | 16 |
epithelial tube open at both ends | 3.10e-07 | 59 |
blood vessel | 3.10e-07 | 59 |
blood vasculature | 3.10e-07 | 59 |
vascular cord | 3.10e-07 | 59 |
somite | 3.51e-07 | 71 |
presomitic mesoderm | 3.51e-07 | 71 |
presumptive segmental plate | 3.51e-07 | 71 |
dermomyotome | 3.51e-07 | 71 |
trunk paraxial mesoderm | 3.51e-07 | 71 |
paraxial mesoderm | 5.46e-07 | 72 |
presumptive paraxial mesoderm | 5.46e-07 | 72 |
dense mesenchyme tissue | 8.37e-07 | 73 |