FFCP PHASE1:Hg19::chr4:76823597..76823623,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5470 | |EntrezGene=5470 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9244 | |HGNC=9244 | ||
|TSSclassifier=strong | |||
|UniProt=E7EPQ9 | |UniProt=E7EPQ9 | ||
|association_with_transcript=-21bp_to_ENST00000511880_5end | |association_with_transcript=-21bp_to_ENST00000511880_5end | ||
|cluster_id=chr4:76823597..76823623,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_1_at_PPEF2_5end | |description=CAGE_peak_1_at_PPEF2_5end | ||
|id=chr4:76823597..76823623,- | |id=chr4:76823597..76823623,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!2.03e-66!2;UBERON:0002757!2.03e-66!2;UBERON:0010134!2.03e-66!2;UBERON:0002784!2.03e-66!2;UBERON:0005408!2.03e-66!2;UBERON:0001899!2.03e-66!2;UBERON:0003296!7.07e-34!4;UBERON:0010133!7.07e-34!4;UBERON:0001894!7.13e-20!7;UBERON:0006222!7.13e-20!7;UBERON:0002360!1.07e-17!2;UBERON:0000094!1.07e-17!2;UBERON:0007645!1.07e-17!2;UBERON:0000966!5.35e-08!5;UBERON:0005388!5.35e-08!5;UBERON:0001802!5.35e-08!5;UBERON:0000970!1.21e-07!20;UBERON:0002104!2.52e-07!21;UBERON:0000020!9.13e-07!23 | |ontology_enrichment_uberon=UBERON:0001905!2.03e-66!2;UBERON:0002757!2.03e-66!2;UBERON:0010134!2.03e-66!2;UBERON:0002784!2.03e-66!2;UBERON:0005408!2.03e-66!2;UBERON:0001899!2.03e-66!2;UBERON:0003296!7.07e-34!4;UBERON:0010133!7.07e-34!4;UBERON:0001894!7.13e-20!7;UBERON:0006222!7.13e-20!7;UBERON:0002360!1.07e-17!2;UBERON:0000094!1.07e-17!2;UBERON:0007645!1.07e-17!2;UBERON:0000966!5.35e-08!5;UBERON:0005388!5.35e-08!5;UBERON:0001802!5.35e-08!5;UBERON:0000970!1.21e-07!20;UBERON:0002104!2.52e-07!21;UBERON:0000020!9.13e-07!23 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.56e-98;2!UBERON:0002757;2.56e-98;2!UBERON:0010134;2.56e-98;2!UBERON:0005408;2.56e-98;2!UBERON:0001899;2.56e-98;2!UBERON:0003296;6.60e-50;4!UBERON:0010133;6.60e-50;4!UBERON:0002784;6.60e-50;4!UBERON:0001894;4.21e-29;7!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.42e-11;20!UBERON:0002104;1.61e-10;21!UBERON:0000020;1.07e-09;23!UBERON:0001032;2.45e-09;24!UBERON:0004456;2.45e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.56e-98,2;UBERON:0002757,2.56e-98,2;UBERON:0010134,2.56e-98,2;UBERON:0005408,2.56e-98,2;UBERON:0001899,2.56e-98,2;UBERON:0003296,6.60e-50,4;UBERON:0010133,6.60e-50,4;UBERON:0002784,6.60e-50,4;UBERON:0001894,4.21e-29,7;UBERON:0006222,4.21e-29,7;UBERON:0000970,1.61e-10,21;UBERON:0002104,1.61e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0000020,2.45e-09,24;UBERON:0001032,2.45e-09,24;UBERON:0004456,2.45e-09,24;UBERON:0003056,4.39e-08,61 | |||
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|short_description=p1@PPEF2 | |short_description=p1@PPEF2 | ||
}} | }} |
Latest revision as of 16:51, 18 September 2015
Short description: | p1@PPEF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPEF2_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -21bp_to_ENST00000511880_5end |
EntrezGene: | PPEF2 |
HGNC: | 9244 |
UniProt: | E7EPQ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 2.56e-98 | 2 |
regional part of epithalamus | 2.56e-98 | 2 |
secretory circumventricular organ | 2.56e-98 | 2 |
circumventricular organ | 2.56e-98 | 2 |
epithalamus | 2.56e-98 | 2 |
gland of diencephalon | 6.60e-50 | 4 |
neuroendocrine gland | 6.60e-50 | 4 |
regional part of diencephalon | 6.60e-50 | 4 |
diencephalon | 4.21e-29 | 7 |
future diencephalon | 4.21e-29 | 7 |
eye | 1.61e-10 | 21 |
visual system | 1.61e-10 | 21 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
sense organ | 2.45e-09 | 24 |
sensory system | 2.45e-09 | 24 |
entire sense organ system | 2.45e-09 | 24 |
pre-chordal neural plate | 4.39e-08 | 61 |