FFCP PHASE1:Hg19::chr5:52552639..52552656,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:52552639..52552656,- | |||
|coexpression_cluster_id=C2642 | |coexpression_cluster_id=C2642 | ||
|description=CAGE_peak_at_chr5:52552639..52552656,- | |description=CAGE_peak_at_chr5:52552639..52552656,- | ||
|id=chr5:52552639..52552656,- | |id=chr5:52552639..52552656,- | ||
|ontology_enrichment_celltype=CL:0002368!6.95e-26!13;CL:0002076!2.05e-25!43;CL:0002202!1.06e-21!9;CL:0002632!1.06e-21!9;CL:0002159!2.44e-19!13;CL:0000223!1.26e-17!59;CL:0002621!1.85e-17!3;CL:0002328!2.44e-17!3;CL:0000068!2.87e-17!3;CL:0000069!2.87e-17!3;CL:0000307!2.87e-17!3;CL:0000377!2.87e-17!3;CL:0002166!7.62e-17!3;CL:0000066!2.67e-15!254;CL:0000575!7.23e-12!2;CL:0002077!1.63e-11!33;CL:0000220!4.52e-10!246;CL:0002321!6.05e-10!248;CL:0002231!8.58e-08!3 | |ontology_enrichment_celltype=CL:0002368!6.95e-26!13;CL:0002076!2.05e-25!43;CL:0002202!1.06e-21!9;CL:0002632!1.06e-21!9;CL:0002159!2.44e-19!13;CL:0000223!1.26e-17!59;CL:0002621!1.85e-17!3;CL:0002328!2.44e-17!3;CL:0000068!2.87e-17!3;CL:0000069!2.87e-17!3;CL:0000307!2.87e-17!3;CL:0000377!2.87e-17!3;CL:0002166!7.62e-17!3;CL:0000066!2.67e-15!254;CL:0000575!7.23e-12!2;CL:0002077!1.63e-11!33;CL:0000220!4.52e-10!246;CL:0002321!6.05e-10!248;CL:0002231!8.58e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002621;2.56e-40;3!CL:0002368;1.50e-25;13!CL:0002202;5.95e-24;9!CL:0002632;5.95e-24;9!CL:0002076;5.44e-21;42!CL:0000307;8.68e-19;3!CL:0002328;1.04e-18;3!CL:0002251;9.53e-17;20!CL:0000575;7.78e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,2.93e-40,3;CL:0002076,1.24e-30,42;CL:0002368,1.29e-25,13;CL:0002202,5.28e-24,9;CL:0002632,5.28e-24,9;CL:0000223,6.58e-22,58;CL:0002328,7.94e-19,3;CL:0000068,9.50e-19,3;CL:0000069,9.50e-19,3;CL:0000307,9.50e-19,3;CL:0000377,9.50e-19,3;CL:0002251,9.85e-17,20;CL:0000066,3.03e-10,253;CL:0000575,7.03e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000377;8.68e-19;3!CL:0000223;3.16e-12;58!UBERON:0008814;4.38e-08;2!UBERON:0010056;4.38e-08;2 | |||
|ontology_enrichment_disease=DOID:1749!9.66e-10!14 | |ontology_enrichment_disease=DOID:1749!9.66e-10!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.34e-15;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.31e-15,14 | |||
|ontology_enrichment_uberon=UBERON:0001949!1.85e-17!3;UBERON:0004815!2.44e-17!3;UBERON:0002031!2.44e-17!3;UBERON:0007196!9.66e-14!14;UBERON:0001558!9.66e-14!14;UBERON:0002185!3.92e-13!4;UBERON:0001708!9.14e-13!4;UBERON:0001704!9.14e-13!4;UBERON:0001004!2.85e-10!72;UBERON:0000161!1.07e-08!35;UBERON:0002090!1.15e-08!6;UBERON:0003126!1.16e-07!7;UBERON:0001005!1.16e-07!7;UBERON:0005157!6.31e-07!51;UBERON:0000065!6.89e-07!53;UBERON:0000997!7.60e-07!1;UBERON:0005056!7.60e-07!1;UBERON:0001828!8.06e-07!8 | |ontology_enrichment_uberon=UBERON:0001949!1.85e-17!3;UBERON:0004815!2.44e-17!3;UBERON:0002031!2.44e-17!3;UBERON:0007196!9.66e-14!14;UBERON:0001558!9.66e-14!14;UBERON:0002185!3.92e-13!4;UBERON:0001708!9.14e-13!4;UBERON:0001704!9.14e-13!4;UBERON:0001004!2.85e-10!72;UBERON:0000161!1.07e-08!35;UBERON:0002090!1.15e-08!6;UBERON:0003126!1.16e-07!7;UBERON:0001005!1.16e-07!7;UBERON:0005157!6.31e-07!51;UBERON:0000065!6.89e-07!53;UBERON:0000997!7.60e-07!1;UBERON:0005056!7.60e-07!1;UBERON:0001828!8.06e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.56e-40;3!UBERON:0003729;9.98e-26;13!UBERON:0004815;1.04e-18;3!UBERON:0002031;1.04e-18;3!UBERON:0000486;6.48e-18;12!UBERON:0003929;1.04e-17;7!UBERON:0000161;1.26e-17;19!UBERON:0000166;1.26e-17;19!UBERON:0000344;9.53e-17;20!UBERON:0003350;1.41e-15;8!UBERON:0001828;1.41e-15;8!UBERON:0004807;4.25e-15;22!UBERON:0003343;1.41e-14;4!UBERON:0004785;1.41e-14;4!UBERON:0007196;1.64e-14;15!UBERON:0001558;1.64e-14;15!UBERON:0000997;2.25e-14;1!UBERON:0005056;2.25e-14;1!UBERON:0004176;2.25e-14;1!UBERON:0000165;5.81e-12;28!UBERON:0002185;1.28e-11;5!UBERON:0005911;2.08e-10;36!UBERON:0000974;4.97e-10;6!UBERON:0001004;7.83e-09;65!UBERON:0003126;1.37e-08;7!UBERON:0001005;1.37e-08;7!UBERON:0000485;1.47e-08;7!UBERON:0001444;9.91e-08;48!UBERON:0007811;4.60e-07;52!UBERON:0000033;5.88e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,2.93e-40,3;UBERON:0003729,1.05e-25,13;UBERON:0004815,7.94e-19,3;UBERON:0002031,7.94e-19,3;UBERON:0001004,6.07e-17,74;UBERON:0000344,9.85e-17,20;UBERON:0003350,1.48e-15,8;UBERON:0001828,1.48e-15,8;UBERON:0000166,3.25e-15,22;UBERON:0003343,1.41e-14,4;UBERON:0004785,1.41e-14,4;UBERON:0007196,1.53e-14,15;UBERON:0001558,1.53e-14,15;UBERON:0000997,2.11e-14,1;UBERON:0005056,2.11e-14,1;UBERON:0004807,6.99e-12,28;UBERON:0002185,1.09e-11,5;UBERON:0000165,1.54e-11,29;UBERON:0000930,1.54e-11,29;UBERON:0000033,4.37e-11,56;UBERON:0000153,5.85e-10,62;UBERON:0007811,5.85e-10,62;UBERON:0001444,1.62e-09,49;UBERON:0000161,2.76e-09,36;UBERON:0004119,9.81e-09,160;UBERON:0000925,9.81e-09,160;UBERON:0006595,9.81e-09,160;UBERON:0000065,1.27e-08,54;UBERON:0003126,1.42e-08,7;UBERON:0001005,1.42e-08,7;UBERON:0000072,4.38e-07,47;UBERON:0000485,7.00e-07,9 | |||
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|short_description=p@chr5:52552639..52552656,- | |short_description=p@chr5:52552639..52552656,- | ||
}} | }} |
Latest revision as of 15:10, 30 July 2015
Short description: | p@chr5:52552639..52552656, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:52552639..52552656, - |
Coexpression cluster: | C2642_oral_Gingival_Bronchial_Tracheal_squamous_Small_Corneal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 2.93e-40 | 3 |
endo-epithelial cell | 1.24e-30 | 42 |
respiratory epithelial cell | 1.29e-25 | 13 |
epithelial cell of tracheobronchial tree | 5.28e-24 | 9 |
epithelial cell of lower respiratory tract | 5.28e-24 | 9 |
endodermal cell | 6.58e-22 | 58 |
bronchial epithelial cell | 7.94e-19 | 3 |
duct epithelial cell | 9.50e-19 | 3 |
branched duct epithelial cell | 9.50e-19 | 3 |
tracheal epithelial cell | 9.50e-19 | 3 |
tracheoblast | 9.50e-19 | 3 |
epithelial cell of alimentary canal | 9.85e-17 | 20 |
epithelial cell | 3.03e-10 | 253 |
corneal epithelial cell | 7.03e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 2.93e-40 | 3 |
mouth mucosa | 1.05e-25 | 13 |
lower respiratory tract epithelium | 7.94e-19 | 3 |
epithelium of bronchus | 7.94e-19 | 3 |
respiratory system | 6.07e-17 | 74 |
mucosa | 9.85e-17 | 20 |
epithelium of mucosa | 1.48e-15 | 8 |
gingiva | 1.48e-15 | 8 |
oral opening | 3.25e-15 | 22 |
mucosa of oral region | 1.41e-14 | 4 |
respiratory system mucosa | 1.41e-14 | 4 |
tracheobronchial tree | 1.53e-14 | 15 |
lower respiratory tract | 1.53e-14 | 15 |
mammalian vulva | 2.11e-14 | 1 |
external female genitalia | 2.11e-14 | 1 |
respiratory system epithelium | 6.99e-12 | 28 |
bronchus | 1.09e-11 | 5 |
mouth | 1.54e-11 | 29 |
stomodeum | 1.54e-11 | 29 |
head | 4.37e-11 | 56 |
anterior region of body | 5.85e-10 | 62 |
craniocervical region | 5.85e-10 | 62 |
subdivision of head | 1.62e-09 | 49 |
orifice | 2.76e-09 | 36 |
endoderm-derived structure | 9.81e-09 | 160 |
endoderm | 9.81e-09 | 160 |
presumptive endoderm | 9.81e-09 | 160 |
respiratory tract | 1.27e-08 | 54 |
trachea | 1.42e-08 | 7 |
respiratory airway | 1.42e-08 | 7 |
segment of respiratory tract | 4.38e-07 | 47 |
simple columnar epithelium | 7.00e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.31e-15 | 14 |