FFCP PHASE1:Hg19::chr19:41086130..41086140,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:41086130..41086140,+
|short_description=p11@SHKBP1
|description=CAGE_peak_11_at_SHKBP1_5end
|association_with_transcript=-14bp_to_uc010xvn.1_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92799 | |EntrezGene=92799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19214 | |HGNC=19214 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_uc010xvn.1_5end | |||
|cluster_id=chr19:41086130..41086140,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_11_at_SHKBP1_5end | |||
|id=chr19:41086130..41086140,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.77e-82!42;CL:0000766!1.01e-80!76;CL:0000860!8.88e-76!45;CL:0002194!1.45e-66!63;CL:0000576!1.45e-66!63;CL:0000040!1.45e-66!63;CL:0000559!1.45e-66!63;CL:0002009!3.22e-64!65;CL:0000839!6.23e-59!70;CL:0000557!5.81e-58!71;CL:0000763!1.86e-53!112;CL:0000049!1.86e-53!112;CL:0000738!2.80e-46!140;CL:0002087!6.37e-38!119;CL:0000037!5.39e-37!172;CL:0000566!5.39e-37!172;CL:0000988!2.91e-34!182;CL:0002032!4.59e-34!165;CL:0000837!4.59e-34!165;CL:0002031!1.42e-30!124;CL:0000094!6.71e-24!8;CL:0000081!5.68e-17!11;CL:0000134!3.35e-11!358;CL:0002320!9.49e-11!365;CL:0000775!2.32e-10!3;CL:0000219!3.65e-09!390;CL:0000767!3.86e-09!3;CL:0000842!7.65e-09!3;CL:0000771!7.36e-08!2;CL:0000048!2.74e-07!430;CL:0000034!3.07e-07!444;CL:0000723!5.02e-07!436;CL:0000224!9.79e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.69e-108;33!CL:0002057;2.69e-108;33!CL:0000473;6.81e-76;39!CL:0000234;6.81e-76;39!CL:0000576;1.85e-50;48!CL:0000766;2.18e-34;69!CL:0000763;4.45e-18;100!CL:0000094;4.16e-16;8!CL:0002087;6.71e-12;104!CL:0000771;9.74e-12;2!CL:0000081;1.22e-11;11!CL:0000738;1.68e-10;136!CL:0000775;4.75e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.90e-93,42;CL:0002057,7.90e-93,42;CL:0000473,1.92e-80,48;CL:0000234,1.92e-80,48;CL:0000766,4.70e-72,72;CL:0002194,4.24e-63,59;CL:0000576,4.24e-63,59;CL:0000040,4.24e-63,59;CL:0000559,4.24e-63,59;CL:0002009,7.35e-61,61;CL:0000839,7.57e-56,66;CL:0000557,6.21e-55,67;CL:0000763,5.68e-46,108;CL:0000049,5.68e-46,108;CL:0000738,3.78e-35,136;CL:0002087,1.41e-29,115;CL:0002032,1.22e-28,161;CL:0000837,1.22e-28,161;CL:0002031,4.32e-28,120;CL:0000037,3.66e-27,168;CL:0000988,1.97e-25,177;CL:0000094,4.86e-16,8;CL:0000771,9.75e-12,2;CL:0000081,1.37e-11,11;CL:0000134,3.34e-09,354;CL:0002320,6.91e-09,361;CL:0000775,4.75e-08,3;CL:0000219,8.95e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;9.04e-69;42!CL:0000049;3.79e-16;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.66e-67!102;UBERON:0003061!1.66e-67!102;UBERON:0002193!2.16e-60!112;UBERON:0002371!2.56e-50!80;UBERON:0001474!4.20e-46!86;UBERON:0004765!9.65e-38!101;UBERON:0001434!9.65e-38!101;UBERON:0002405!1.26e-35!115;UBERON:0003081!2.65e-25!216;UBERON:0002204!8.75e-19!167;UBERON:0000178!1.03e-17!15;UBERON:0000179!1.03e-17!15;UBERON:0000463!1.03e-17!15;UBERON:0002384!3.91e-10!375;UBERON:0000926!2.05e-07!448;UBERON:0004120!2.05e-07!448;UBERON:0006603!2.05e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.46e-11;15!UBERON:0000179;6.46e-11;15!UBERON:0000463;6.46e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.20e-54,98;UBERON:0003061,7.20e-54,98;UBERON:0002193,2.77e-48,108;UBERON:0002371,8.98e-48,76;UBERON:0001474,7.32e-44,82;UBERON:0004765,1.90e-39,90;UBERON:0002405,5.50e-38,93;UBERON:0001434,6.50e-35,100;UBERON:0003081,1.71e-22,203;UBERON:0002204,1.88e-18,167;UBERON:0000926,5.75e-12,315;UBERON:0004120,5.75e-12,315;UBERON:0006603,5.75e-12,315;UBERON:0000178,6.53e-11,15;UBERON:0000179,6.53e-11,15;UBERON:0000463,6.53e-11,15;UBERON:0002384,1.86e-08,371 | |||
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| ||
|short_description=p11@SHKBP1 | |||
}} | }} |
Latest revision as of 02:20, 18 September 2015
Short description: | p11@SHKBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SHKBP1_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | -14bp_to_uc010xvn.1_5end |
EntrezGene: | SHKBP1 |
HGNC: | 19214 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.90e-93 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.90e-93 | 42 |
defensive cell | 1.92e-80 | 48 |
phagocyte | 1.92e-80 | 48 |
myeloid leukocyte | 4.70e-72 | 72 |
monopoietic cell | 4.24e-63 | 59 |
monocyte | 4.24e-63 | 59 |
monoblast | 4.24e-63 | 59 |
promonocyte | 4.24e-63 | 59 |
macrophage dendritic cell progenitor | 7.35e-61 | 61 |
myeloid lineage restricted progenitor cell | 7.57e-56 | 66 |
granulocyte monocyte progenitor cell | 6.21e-55 | 67 |
myeloid cell | 5.68e-46 | 108 |
common myeloid progenitor | 5.68e-46 | 108 |
leukocyte | 3.78e-35 | 136 |
nongranular leukocyte | 1.41e-29 | 115 |
hematopoietic oligopotent progenitor cell | 1.22e-28 | 161 |
hematopoietic multipotent progenitor cell | 1.22e-28 | 161 |
hematopoietic lineage restricted progenitor cell | 4.32e-28 | 120 |
hematopoietic stem cell | 3.66e-27 | 168 |
hematopoietic cell | 1.97e-25 | 177 |
granulocyte | 4.86e-16 | 8 |
eosinophil | 9.75e-12 | 2 |
blood cell | 1.37e-11 | 11 |
mesenchymal cell | 3.34e-09 | 354 |
connective tissue cell | 6.91e-09 | 361 |
neutrophil | 4.75e-08 | 3 |
motile cell | 8.95e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.20e-54 | 98 |
blood island | 7.20e-54 | 98 |
hemolymphoid system | 2.77e-48 | 108 |
bone marrow | 8.98e-48 | 76 |
bone element | 7.32e-44 | 82 |
skeletal element | 1.90e-39 | 90 |
immune system | 5.50e-38 | 93 |
skeletal system | 6.50e-35 | 100 |
lateral plate mesoderm | 1.71e-22 | 203 |
musculoskeletal system | 1.88e-18 | 167 |
mesoderm | 5.75e-12 | 315 |
mesoderm-derived structure | 5.75e-12 | 315 |
presumptive mesoderm | 5.75e-12 | 315 |
blood | 6.53e-11 | 15 |
haemolymphatic fluid | 6.53e-11 | 15 |
organism substance | 6.53e-11 | 15 |
connective tissue | 1.86e-08 | 371 |