FFCP PHASE1:Hg19::chr19:46457188..46457193,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:46457188..46457193,-
|short_description=p@chr19:46457188..46457193,-
|description=CAGE_peak_at_chr19:46457188..46457193,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:46457188..46457193,- | |||
|description=CAGE_peak_at_chr19:46457188..46457193,- | |||
|id=chr19:46457188..46457193,- | |||
|ontology_enrichment_celltype=CL:0002139!6.44e-15!24;CL:0000071!1.97e-13!18;CL:0002546!1.97e-13!18;CL:0000540!6.06e-12!6;CL:0000031!6.06e-12!6;CL:0000404!6.06e-12!6;CL:0000115!1.74e-10!35;CL:0000047!1.04e-08!8;CL:0002078!1.74e-07!44;CL:0002144!2.82e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002188;1.13e-18;5!CL:1000746;1.23e-13;7!CL:1000612;1.23e-13;7!CL:0002144;1.21e-08;3!CL:0002681;2.37e-08;12!CL:0002584;2.37e-08;12!CL:0000115;4.82e-08;36!CL:0002078;5.33e-07;45!CL:1000449;7.41e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,1.24e-18,5;CL:1000746,1.31e-13,7;CL:1000612,1.31e-13,7;CL:0000115,3.26e-10,36;CL:0002144,1.04e-08,3;CL:0002681,2.46e-08,12;CL:0002584,2.46e-08,12;CL:0002078,3.05e-08,45;CL:1000449,7.63e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.73e-37!82;UBERON:0005743!1.69e-36!86;UBERON:0001049!2.95e-34!57;UBERON:0005068!2.95e-34!57;UBERON:0006241!2.95e-34!57;UBERON:0007135!2.95e-34!57;UBERON:0002020!1.23e-33!34;UBERON:0003528!1.23e-33!34;UBERON:0001893!2.01e-33!34;UBERON:0002791!6.17e-32!33;UBERON:0000073!9.79e-32!94;UBERON:0001016!9.79e-32!94;UBERON:0002616!8.64e-31!59;UBERON:0002780!8.97e-31!41;UBERON:0001890!8.97e-31!41;UBERON:0006240!8.97e-31!41;UBERON:0001869!1.39e-30!32;UBERON:0003080!7.68e-30!42;UBERON:0000955!1.03e-29!69;UBERON:0006238!1.03e-29!69;UBERON:0003075!3.24e-27!86;UBERON:0007284!3.24e-27!86;UBERON:0002346!1.88e-25!90;UBERON:0000956!2.84e-25!25;UBERON:0000203!2.84e-25!25;UBERON:0002619!1.75e-23!22;UBERON:0000025!2.37e-23!194;UBERON:0003056!1.91e-22!61;UBERON:0004111!1.75e-21!241;UBERON:0001950!4.91e-20!20;UBERON:0000033!1.12e-18!123;UBERON:0000153!3.00e-18!129;UBERON:0007811!3.00e-18!129;UBERON:0007023!4.01e-18!115;UBERON:0000477!5.58e-18!286;UBERON:0004121!1.10e-17!169;UBERON:0000924!6.13e-17!173;UBERON:0006601!6.13e-17!173;UBERON:0001986!1.97e-13!18;UBERON:0004638!1.97e-13!18;UBERON:0004852!1.97e-13!18;UBERON:0000483!6.92e-13!309;UBERON:0000119!1.38e-12!312;UBERON:0000200!1.84e-11!6;UBERON:0000487!2.05e-10!22;UBERON:0000055!2.55e-10!69;UBERON:0002308!9.99e-10!9;UBERON:0000125!9.99e-10!9;UBERON:0001981!2.07e-09!60;UBERON:0007500!2.07e-09!60;UBERON:0004537!2.07e-09!60;UBERON:0006965!2.07e-09!60;UBERON:0002049!5.89e-09!79;UBERON:0007798!5.89e-09!79;UBERON:0001871!6.56e-09!7;UBERON:0006914!8.47e-09!25;UBERON:0000922!2.38e-08!612;UBERON:0000468!4.99e-08!659;UBERON:0000064!6.18e-08!219;UBERON:0004872!7.37e-08!84;UBERON:0002420!1.83e-07!9;UBERON:0007245!1.83e-07!9;UBERON:0010009!1.83e-07!9;UBERON:0010011!1.83e-07!9;UBERON:0000454!1.83e-07!9;UBERON:0002298!1.91e-07!8;UBERON:0001915!2.82e-07!3;UBERON:0001982!2.82e-07!3;UBERON:0000467!2.96e-07!625;UBERON:0000480!3.32e-07!626;UBERON:0009663!7.58e-07!7;UBERON:0000349!7.59e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.23e-13;7!UBERON:0001229;1.23e-13;7!UBERON:0002771;1.48e-12;2!UBERON:0010523;1.21e-08;3!UBERON:0001915;1.21e-08;3!UBERON:0001982;1.21e-08;3!UBERON:0001225;2.37e-08;12!UBERON:0008987;2.37e-08;12!UBERON:0001851;7.41e-07;15!UBERON:0006555;7.41e-07;15!UBERON:0000353;7.41e-07;15!UBERON:0004819;7.41e-07;15!UBERON:0001285;7.41e-07;15!UBERON:0007684;7.41e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.31e-13,7;UBERON:0000074,1.31e-13,7;UBERON:0001229,1.31e-13,7;UBERON:0001230,1.31e-13,7;UBERON:0003220,1.31e-13,7;UBERON:0005749,1.31e-13,7;UBERON:0004199,1.31e-13,7;UBERON:0004209,1.31e-13,7;UBERON:0004198,1.31e-13,7;UBERON:0002771,1.48e-12,2;UBERON:0005103,4.94e-12,8;UBERON:0000083,4.94e-12,8;UBERON:0009201,4.94e-12,8;UBERON:0006553,4.94e-12,8;UBERON:0003074,4.94e-12,8;UBERON:0003060,4.94e-12,8;UBERON:0000080,8.37e-11,9;UBERON:0002120,8.37e-11,9;UBERON:0004875,8.37e-11,9;UBERON:0005721,8.37e-11,9;UBERON:0005754,8.37e-11,9;UBERON:0007297,8.37e-11,9;UBERON:0004876,5.20e-09,11;UBERON:0010523,1.04e-08,3;UBERON:0001915,1.04e-08,3;UBERON:0001982,1.04e-08,3;UBERON:0001225,2.46e-08,12;UBERON:0008987,2.46e-08,12;UBERON:0003887,2.46e-08,12;UBERON:0001851,7.63e-07,15;UBERON:0004211,7.63e-07,15;UBERON:0009773,7.63e-07,15;UBERON:0000353,7.63e-07,15;UBERON:0001231,7.63e-07,15;UBERON:0001285,7.63e-07,15;UBERON:0007684,7.63e-07,15;UBERON:0004208,7.63e-07,15 | |||
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| ||
|short_description=p@chr19:46457188..46457193,- | |||
}} | }} |
Latest revision as of 15:11, 27 July 2015
Short description: | p@chr19:46457188..46457193, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:46457188..46457193, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 1.24e-18 | 5 |
glomerular cell | 1.31e-13 | 7 |
kidney corpuscule cell | 1.31e-13 | 7 |
endothelial cell | 3.26e-10 | 36 |
capillary endothelial cell | 1.04e-08 | 3 |
kidney cortical cell | 2.46e-08 | 12 |
renal cortical epithelial cell | 2.46e-08 | 12 |
meso-epithelial cell | 3.05e-08 | 45 |
epithelial cell of nephron | 7.63e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.31e-13 | 7 |
renal glomerulus | 1.31e-13 | 7 |
renal corpuscle | 1.31e-13 | 7 |
glomerular capsule | 1.31e-13 | 7 |
metanephric mesenchyme | 1.31e-13 | 7 |
glomerular tuft | 1.31e-13 | 7 |
S-shaped body | 1.31e-13 | 7 |
renal vesicle | 1.31e-13 | 7 |
comma-shaped body | 1.31e-13 | 7 |
middle temporal gyrus | 1.48e-12 | 2 |
mesonephric epithelium | 4.94e-12 | 8 |
mesonephric tubule | 4.94e-12 | 8 |
nephric duct | 4.94e-12 | 8 |
renal duct | 4.94e-12 | 8 |
mesonephric duct | 4.94e-12 | 8 |
pronephric duct | 4.94e-12 | 8 |
mesonephros | 8.37e-11 | 9 |
pronephros | 8.37e-11 | 9 |
nephrogenic cord | 8.37e-11 | 9 |
pronephric mesoderm | 8.37e-11 | 9 |
rostral part of nephrogenic cord | 8.37e-11 | 9 |
presumptive pronephric mesoderm | 8.37e-11 | 9 |
urogenital ridge | 5.20e-09 | 11 |
microcirculatory vessel | 1.04e-08 | 3 |
endothelium of capillary | 1.04e-08 | 3 |
capillary | 1.04e-08 | 3 |
cortex of kidney | 2.46e-08 | 12 |
renal parenchyma | 2.46e-08 | 12 |
intraembryonic coelom | 2.46e-08 | 12 |
cortex | 7.63e-07 | 15 |
nephron epithelium | 7.63e-07 | 15 |
renal tubule | 7.63e-07 | 15 |
parenchyma | 7.63e-07 | 15 |
nephron tubule | 7.63e-07 | 15 |
nephron | 7.63e-07 | 15 |
uriniferous tubule | 7.63e-07 | 15 |
nephrogenic mesenchyme | 7.63e-07 | 15 |