FF:10691-109F7: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	meningioma cell line:HKBMM
Species:	Human (Homo sapiens)
Library ID:	CNhs11945
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	female
age	48
cell type	meningeal cell
cell line	HKBMM
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005211

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11945		CAGE		DRX007932		DRR008804

Accession ID Hg19

Library id		BAM		CTSS
CNhs11945		DRZ000229		DRZ001614

Accession ID Hg38

Library id		BAM		CTSS
CNhs11945		DRZ011579		DRZ012964

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0918
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0918
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.106
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0667
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.46
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.108
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.224
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.145
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0118
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0918
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0341
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.185
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.102
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0918
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.838
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.187
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11945

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.129
MA0003.1	MA0003.1	0.396
MA0004.1	MA0004.1	0.675
MA0006.1	MA0006.1	0.131
MA0007.1	MA0007.1	0.483
MA0009.1	MA0009.1	0.257
MA0014.1	MA0014.1	0.783
MA0017.1	MA0017.1	0.144
MA0018.2	MA0018.2	7.74611e-4
MA0019.1	MA0019.1	0.888
MA0024.1	MA0024.1	5.2969e-4
MA0025.1	MA0025.1	0.0076
MA0027.1	MA0027.1	0.97
MA0028.1	MA0028.1	0.661
MA0029.1	MA0029.1	0.866
MA0030.1	MA0030.1	0.948
MA0031.1	MA0031.1	0.624
MA0035.2	MA0035.2	0.191
MA0038.1	MA0038.1	0.00873
MA0039.2	MA0039.2	0.377
MA0040.1	MA0040.1	0.936
MA0041.1	MA0041.1	0.63
MA0042.1	MA0042.1	0.841
MA0043.1	MA0043.1	9.43057e-7
MA0046.1	MA0046.1	0.886
MA0047.2	MA0047.2	0.0452
MA0048.1	MA0048.1	0.258
MA0050.1	MA0050.1	1.46612e-12
MA0051.1	MA0051.1	8.76964e-13
MA0052.1	MA0052.1	0.00655
MA0055.1	MA0055.1	0.185
MA0057.1	MA0057.1	0.0558
MA0058.1	MA0058.1	0.202
MA0059.1	MA0059.1	0.228
MA0060.1	MA0060.1	6.46416e-7
MA0061.1	MA0061.1	0.243
MA0062.2	MA0062.2	4.38149e-4
MA0065.2	MA0065.2	0.0122
MA0066.1	MA0066.1	0.644
MA0067.1	MA0067.1	0.0172
MA0068.1	MA0068.1	0.557
MA0069.1	MA0069.1	0.772
MA0070.1	MA0070.1	0.398
MA0071.1	MA0071.1	0.939
MA0072.1	MA0072.1	0.387
MA0073.1	MA0073.1	0.569
MA0074.1	MA0074.1	0.238
MA0076.1	MA0076.1	0.0247
MA0077.1	MA0077.1	0.468
MA0078.1	MA0078.1	0.896
MA0079.2	MA0079.2	0.424
MA0080.2	MA0080.2	1.17932e-5
MA0081.1	MA0081.1	0.0109
MA0083.1	MA0083.1	0.521
MA0084.1	MA0084.1	0.407
MA0087.1	MA0087.1	0.282
MA0088.1	MA0088.1	0.552
MA0090.1	MA0090.1	0.431
MA0091.1	MA0091.1	0.813
MA0092.1	MA0092.1	0.637
MA0093.1	MA0093.1	0.62
MA0099.2	MA0099.2	1.88231e-4
MA0100.1	MA0100.1	0.115
MA0101.1	MA0101.1	0.632
MA0102.2	MA0102.2	0.0265
MA0103.1	MA0103.1	0.00655
MA0104.2	MA0104.2	0.678
MA0105.1	MA0105.1	0.0569
MA0106.1	MA0106.1	0.00441
MA0107.1	MA0107.1	0.3
MA0108.2	MA0108.2	0.285
MA0111.1	MA0111.1	0.928
MA0112.2	MA0112.2	0.00212
MA0113.1	MA0113.1	0.51
MA0114.1	MA0114.1	0.0672
MA0115.1	MA0115.1	0.679
MA0116.1	MA0116.1	0.0474
MA0117.1	MA0117.1	0.171
MA0119.1	MA0119.1	0.0208
MA0122.1	MA0122.1	0.682
MA0124.1	MA0124.1	0.0201
MA0125.1	MA0125.1	0.295
MA0131.1	MA0131.1	0.137
MA0135.1	MA0135.1	0.226
MA0136.1	MA0136.1	2.43628e-7
MA0137.2	MA0137.2	0.0203
MA0138.2	MA0138.2	0.956
MA0139.1	MA0139.1	0.224
MA0140.1	MA0140.1	0.996
MA0141.1	MA0141.1	0.166
MA0142.1	MA0142.1	0.034
MA0143.1	MA0143.1	0.277
MA0144.1	MA0144.1	0.568
MA0145.1	MA0145.1	0.708
MA0146.1	MA0146.1	0.0138
MA0147.1	MA0147.1	0.64
MA0148.1	MA0148.1	0.0121
MA0149.1	MA0149.1	0.0901
MA0150.1	MA0150.1	0.222
MA0152.1	MA0152.1	0.647
MA0153.1	MA0153.1	0.0873
MA0154.1	MA0154.1	0.285
MA0155.1	MA0155.1	0.938
MA0156.1	MA0156.1	0.00105
MA0157.1	MA0157.1	0.174
MA0159.1	MA0159.1	0.236
MA0160.1	MA0160.1	0.441
MA0162.1	MA0162.1	0.157
MA0163.1	MA0163.1	0.0165
MA0164.1	MA0164.1	0.31
MA0258.1	MA0258.1	0.0771
MA0259.1	MA0259.1	0.503

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11945

Novel motif	Logo	P-value
1	1	0.247
10	10	0.318
100	100	0.614
101	101	0.46
102	102	0.346
103	103	0.292
104	104	0.884
105	105	0.284
106	106	0.00199
107	107	1.58123e-4
108	108	0.0238
109	109	0.0517
11	11	0.153
110	110	0.282
111	111	0.15
112	112	0.309
113	113	0.438
114	114	0.0872
115	115	0.166
116	116	0.636
117	117	0.458
118	118	0.106
119	119	0.338
12	12	0.171
120	120	0.0209
121	121	0.92
122	122	0.317
123	123	0.398
124	124	0.201
125	125	0.221
126	126	0.575
127	127	0.48
128	128	0.146
129	129	0.861
13	13	0.282
130	130	0.0867
131	131	0.465
132	132	0.171
133	133	0.538
134	134	0.126
135	135	0.399
136	136	0.177
137	137	0.534
138	138	0.234
139	139	0.0214
14	14	0.573
140	140	0.896
141	141	0.955
142	142	0.808
143	143	0.173
144	144	0.822
145	145	0.147
146	146	0.67
147	147	0.907
148	148	0.189
149	149	0.218
15	15	0.192
150	150	0.0794
151	151	0.285
152	152	0.00325
153	153	0.73
154	154	0.93
155	155	0.469
156	156	0.8
157	157	0.539
158	158	0.163
159	159	0.277
16	16	0.158
160	160	0.485
161	161	0.356
162	162	0.258
163	163	0.807
164	164	0.23
165	165	0.922
166	166	0.731
167	167	0.335
168	168	0.685
169	169	0.0304
17	17	0.269
18	18	0.0864
19	19	0.0714
2	2	0.556
20	20	0.415
21	21	0.301
22	22	0.314
23	23	0.0785
24	24	0.875
25	25	0.225
26	26	0.698
27	27	0.309
28	28	0.857
29	29	0.0834
3	3	0.0936
30	30	0.855
31	31	0.579
32	32	0.476
33	33	0.965
34	34	0.993
35	35	0.507
36	36	0.821
37	37	0.0656
38	38	0.652
39	39	0.213
4	4	0.738
40	40	0.789
41	41	0.344
42	42	0.336
43	43	0.231
44	44	0.017
45	45	0.43
46	46	0.0804
47	47	0.378
48	48	0.22
49	49	0.458
5	5	0.796
50	50	0.58
51	51	0.397
52	52	0.941
53	53	0.621
54	54	0.323
55	55	0.343
56	56	0.178
57	57	0.511
58	58	0.843
59	59	0.0119
6	6	0.846
60	60	0.469
61	61	0.423
62	62	0.537
63	63	0.194
64	64	0.493
65	65	0.148
66	66	0.642
67	67	0.467
68	68	0.679
69	69	0.168
7	7	0.61
70	70	0.0122
71	71	0.106
72	72	0.82
73	73	0.0152
74	74	0.461
75	75	0.0666
76	76	0.864
77	77	0.0893
78	78	0.0669
79	79	0.257
8	8	0.0429
80	80	0.0779
81	81	0.608
82	82	0.521
83	83	0.773
84	84	0.853
85	85	0.0292
86	86	0.748
87	87	0.00883
88	88	0.602
89	89	0.127
9	9	0.892
90	90	0.264
91	91	0.986
92	92	0.14
93	93	0.532
94	94	0.609
95	95	0.341
96	96	0.78
97	97	0.826
98	98	0.735
99	99	0.00531

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11945

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002379 meningothelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104398 meningioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002379 (meningothelial cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
3620 (central nervous system cancer)
3565 (meningioma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0104398 (meningioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005211
+|accession_numbers=CAGE;DRX007932;DRR008804;DRZ000229;DRZ001614;DRZ011579;DRZ012964
 |ancestors_in_anatomy_facet=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000075,CL:0000066,CL:0002371,CL:0000221,CL:0000710,CL:0000220,CL:0000004,CL:0000255,CL:0002077,CL:0002379,CL:0000133
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0002379
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093,DOID:3620,DOID:3565
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0104398
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr15:67391010..67391046,+!p13@SMAD3!1.71!50.11!SMAD3;;chr6:34204921..34204939,+!p3@HMGA1!1.67!1299.14!HMGA1;;chr3:12330560..12330579,+!p1@PPARG!1.65!49.64!PPARG;;chr17:35294075..35294102,+!p1@ENST00000559335!1.64!43.05!LHX1;;chr1:201979703..201979721,+!p2@ELF3!1.56!35.05!ELF3;;chr16:86544113..86544145,+!p1@FOXF1!1.52!40.00!FOXF1;;chr12:66218836..66218888,+!p1@HMGA2!1.48!263.73!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!1.47!72.93!NCOA7;;chr11:615570..615721,-!p2@IRF7!1.46!53.64!IRF7;;chr12:66218598..66218645,+!p2@HMGA2!1.40!107.28!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!1.39!23.29!SIX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.38!79.76!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.82!ZBED1;;chr6:126240442..126240459,+!p4@NCOA7!1.37!28.47!NCOA7;;chr15:67418047..67418093,+!p4@SMAD3!1.35!27.06!SMAD3;;chr11:61520075..61520136,+!p1@C11orf9!1.31!40.47!C11orf9;;chr15:67418177..67418204,+!p9@SMAD3!1.31!19.29!SMAD3;;chr18:19749541..19749557,+!p1@GATA6!1.30!59.05!GATA6;;chr7:26191809..26191890,+!p1@NFE2L3!1.28!88.22!NFE2L3;;chr5:134369905..134369972,-!p1@PITX1!1.28!27.53!PITX1;;chr7:27153454..27153469,-!p2@HOXA3!1.24!16.47!HOXA3;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.94!HMGA2;;chr15:67418119..67418162,+!p5@SMAD3!1.20!16.47!SMAD3;;chr12:26277817..26277863,-!p2@BHLHE41!1.18!19.29!BHLHE41;;chr20:42543441..42543497,+!p1@TOX2!1.14!57.88!TOX2;;chr11:615942..615957,-!p1@IRF7!1.11!112.22!IRF7;;chr11:65667884..65667895,-!p2@FOSL1!1.11!46.11!FOSL1;;chr5:134369879..134369898,-!p2@PITX1!1.11!12.00!PITX1;;chr6:126240463..126240489,+!p6@NCOA7!1.10!12.94!NCOA7;;chr17:46682321..46682362,-!p1@HOXB6!1.10!11.53!HOXB6;;chr2:223163706..223163730,-!p1@PAX3!1.09!11.29!PAX3;;chr6:126240356..126240379,+!p7@NCOA7!1.07!13.17!NCOA7;;chr12:66218904..66218913,+!p11@HMGA2!1.07!10.82!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.06!15.29!HOXB7;;chr6:34210478..34210481,+!p8@HMGA1!1.06!10.59!HMGA1;;chr20:22564895..22564910,-!p1@FOXA2!1.06!10.35!FOXA2;;chr6:34204672..34204692,+!p1@HMGA1!1.04!1119.39!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.52!CREB3L1;;chr1:201979743..201979762,+!p1@ELF3!1.03!9.65!ELF3;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.17!BHLHE41;;chr13:45010939..45011033,-!p1@TSC22D1!1.00!596.63!TSC22D1;;chr11:65667846..65667868,-!p1@FOSL1!1.00!241.85!FOSL1;;chr17:41622925..41622976,-!p3@ETV4!0.99!13.41!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!0.98!11.06!TFAP2C;;chr1:25291475..25291511,-!p2@RUNX3!0.94!7.76!RUNX3;;chr8:11561684..11561751,+!p1@GATA4!0.94!7.76!GATA4;;chr12:66218923..66218934,+!p14@HMGA2!0.94!7.76!HMGA2;;chr12:27485823..27485868,+!p2@ARNTL2!0.93!31.29!ARNTL2;;chr5:174151612..174151633,+!p2@MSX2!0.93!7.53!MSX2;;chr12:27485762..27485776,+!p3@ARNTL2!0.92!20.47!ARNTL2;;chr11:32457075..32457095,-!p1@WT1!0.92!7.29!WT1;;chr16:86612046..86612065,+!p3@FOXL1!0.92!7.29!FOXL1;;chr20:42602000..42602034,+!p5@TOX2!0.91!7.06!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.76!SIX1;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.76!MSX2;;chr13:45009301..45009320,-!p7@TSC22D1!0.89!6.82!TSC22D1;;chr18:19749517..19749531,+!p3@GATA6!0.88!12.23!GATA6;;chr4:4861385..4861398,+!p1@MSX1!0.87!20.00!MSX1;;chr16:86600426..86600441,+!p1@FOXC2!0.87!16.47!FOXC2;;chr20:42543506..42543549,+!p2@TOX2!0.87!16.23!TOX2;;chr8:22550982..22550999,-!p1@EGR3!0.86!18.59!EGR3;;chr17:1959369..1959388,+!p2@HIC1!0.85!16.94!HIC1;;chr6:10415276..10415341,-!p2@TFAP2A!0.85!7.53!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!0.85!6.12!EHF;;chr21:38071430..38071456,+!p1@SIM2!0.85!6.12!SIM2;;chr12:27485785..27485816,+!p1@ARNTL2!0.84!43.99!ARNTL2;;chr8:10588010..10588030,-!p1@SOX7!0.84!5.88!SOX7;;chr2:119604456..119604501,-!p2@EN1!0.84!5.88!EN1;;chr1:935467..935484,-!p1@HES4!0.83!27.29!HES4;;chr2:191878812..191878823,-!p2@STAT1!0.83!7.53!STAT1;;chr6:1312325..1312340,+!p1@FOXQ1!0.82!9.41!FOXQ1;;chr20:2673383..2673441,+!p1@EBF4!0.82!9.18!EBF4;;chr12:26278008..26278024,-!p4@BHLHE41!0.82!6.82!BHLHE41;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.35!HOXB2;;chr16:85932760..85932775,+!p1@IRF8!0.81!5.41!IRF8;;chr20:22565370..22565388,-!p2@FOXA2!0.81!5.41!FOXA2;;chr2:119605214..119605230,-!p1@EN1!0.81!5.41!EN1;;chr7:139762641..139762768,-!p1@PARP12!0.79!76.23!PARP12;;chr17:70117153..70117174,+!p1@SOX9!0.79!58.35!SOX9;;chr14:73360799..73360817,-!p1@DPF3!0.79!19.06!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.88!TWIST2;;chr3:12329397..12329433,+!p2@PPARG!0.79!12.47!PPARG;;chr20:22565185..22565223,-!p3@FOXA2!0.79!5.18!FOXA2;;chr11:32457103..32457123,-!p3@WT1!0.79!5.18!WT1;;chr1:25256756..25256774,-!p1@RUNX3!0.78!9.88!RUNX3;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.00!ZFP64;;chr16:54320158..54320200,-!p5@IRX3!0.77!7.29!IRX3;;chr17:46687959..46688007,-!p2@HOXB7!0.77!7.06!HOXB7;;chr16:86612320..86612394,+!p1@FOXL1!0.77!4.94!FOXL1;;chr11:65668011..65668020,-!p3@FOSL1!0.77!4.94!FOSL1;;chr15:67358163..67358192,+!p1@SMAD3!0.76!123.04!SMAD3;;chr15:67357924..67357952,+!p2@SMAD3!0.76!34.58!SMAD3;;chr11:65687362..65687436,+!p3@DRAP1!0.76!23.5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+|ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=FF:0104398
 |fonse_cell_line_closure=FF:0104398
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg19.ctss.bed.gz
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/meningioma%2520cell%2520line%253aHKBMM.CNhs11945.10691-109F7.hg38.nobarcode.bam
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 |id=FF:10691-109F7
-|is_a=CL:0002379;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0104398
+|is_a=CL:0002379;;EFO:0002091;;FF:0000210;;FF:0104398
+|is_obsolete=
+|library_id=CNhs11945
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 |name=meningioma cell line:HKBMM
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11945,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
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 |profile_srnaseq=,,,
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 |rna_box=109
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@@ Line 57: / Line 78: @@
 |rna_weight_ug=20.64898
 |sample_age=48
+|sample_category=cell lines
 |sample_cell_catalog=RCB0680
 |sample_cell_line=HKBMM
@@ Line 69: / Line 91: @@
 |sample_ethnicity=unknown
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+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.45951785440872e-234!GO:0005737;cytoplasm;2.72355781701285e-200!GO:0043226;organelle;8.01909582727903e-185!GO:0043229;intracellular organelle;2.26886179751407e-184!GO:0043231;intracellular membrane-bound organelle;2.80526004549588e-183!GO:0043227;membrane-bound organelle;6.07954830327702e-183!GO:0044444;cytoplasmic part;8.17368188070109e-142!GO:0044422;organelle part;1.37638826937979e-126!GO:0044446;intracellular organelle part;2.75542500727722e-125!GO:0032991;macromolecular complex;3.50968177401994e-88!GO:0030529;ribonucleoprotein complex;4.61696541436025e-87!GO:0044237;cellular metabolic process;2.83915504742592e-86!GO:0044238;primary metabolic process;2.83915504742592e-86!GO:0005515;protein binding;7.201708202141e-81!GO:0043170;macromolecule metabolic process;1.10329318077028e-79!GO:0043233;organelle lumen;9.98773427851322e-71!GO:0031974;membrane-enclosed lumen;9.98773427851322e-71!GO:0005739;mitochondrion;2.33435457879726e-70!GO:0003723;RNA binding;1.10506568245817e-68!GO:0005634;nucleus;1.8957509737422e-63!GO:0044428;nuclear part;5.54179055642579e-63!GO:0019538;protein metabolic process;4.35646243737859e-56!GO:0006412;translation;3.12246043540012e-55!GO:0005840;ribosome;5.27453005865269e-55!GO:0044260;cellular macromolecule metabolic process;8.05855173697981e-50!GO:0044267;cellular protein metabolic process;1.43093593947864e-49!GO:0031090;organelle membrane;2.32123209454134e-49!GO:0003735;structural constituent of ribosome;2.34631450319577e-47!GO:0016043;cellular component organization and biogenesis;4.38020716318923e-47!GO:0006396;RNA processing;3.95134072291672e-46!GO:0033036;macromolecule localization;1.92923420495714e-45!GO:0015031;protein transport;8.55145219290896e-45!GO:0044429;mitochondrial part;4.71108802544093e-44!GO:0009059;macromolecule biosynthetic process;5.980040113085e-44!GO:0045184;establishment of protein localization;4.28085889195967e-43!GO:0009058;biosynthetic process;1.73243578167983e-42!GO:0043283;biopolymer metabolic process;2.27491104539251e-42!GO:0008104;protein localization;2.36805750799912e-42!GO:0044249;cellular biosynthetic process;5.72306016090388e-42!GO:0005829;cytosol;2.34165991313215e-41!GO:0031981;nuclear lumen;2.48432476092761e-41!GO:0043234;protein complex;3.0591465768203e-41!GO:0033279;ribosomal subunit;6.73194011610842e-40!GO:0010467;gene expression;3.83040385896408e-39!GO:0031967;organelle envelope;3.80316766493408e-37!GO:0031975;envelope;9.04637861382123e-37!GO:0046907;intracellular transport;9.08337627242467e-35!GO:0016071;mRNA metabolic process;5.96417928099937e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.96417928099937e-34!GO:0008380;RNA splicing;3.58307021087925e-31!GO:0006886;intracellular protein transport;5.92568938879599e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.80367809083222e-30!GO:0065003;macromolecular complex assembly;4.65844104500804e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.93206132557956e-29!GO:0006397;mRNA processing;1.48327406844891e-28!GO:0005740;mitochondrial envelope;4.89080393546216e-28!GO:0022607;cellular component assembly;2.97607108784828e-27!GO:0043228;non-membrane-bound organelle;4.41381819514283e-27!GO:0043232;intracellular non-membrane-bound organelle;4.41381819514283e-27!GO:0006996;organelle organization and biogenesis;2.3271035773148e-26!GO:0031966;mitochondrial membrane;2.78309239085739e-26!GO:0019866;organelle inner membrane;2.50525300794017e-25!GO:0005743;mitochondrial inner membrane;1.09588074344218e-23!GO:0005654;nucleoplasm;1.77952559033881e-23!GO:0044445;cytosolic part;1.80202953955231e-23!GO:0051649;establishment of cellular localization;2.54545317642735e-23!GO:0051641;cellular localization;3.12483397437888e-23!GO:0005681;spliceosome;1.20622821612957e-22!GO:0000166;nucleotide binding;3.84245408519616e-22!GO:0012505;endomembrane system;4.22442458215392e-21!GO:0006457;protein folding;6.54585910938375e-21!GO:0006119;oxidative phosphorylation;7.56224383237157e-21!GO:0015934;large ribosomal subunit;9.02086625586051e-21!GO:0005730;nucleolus;1.14416506276527e-20!GO:0005783;endoplasmic reticulum;1.63090395919041e-20!GO:0015935;small ribosomal subunit;3.79691366084478e-20!GO:0016462;pyrophosphatase activity;4.72443576333486e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.05049058932994e-20!GO:0031980;mitochondrial lumen;7.71689662218948e-20!GO:0005759;mitochondrial matrix;7.71689662218948e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.46877303025294e-20!GO:0017111;nucleoside-triphosphatase activity;1.12457576174669e-19!GO:0044455;mitochondrial membrane part;2.1448101774257e-19!GO:0005794;Golgi apparatus;3.50520717399363e-19!GO:0044451;nucleoplasm part;5.13726036864908e-19!GO:0003676;nucleic acid binding;6.33151857230053e-19!GO:0016874;ligase activity;6.63518582945248e-19!GO:0008134;transcription factor binding;5.43153135954718e-18!GO:0048770;pigment granule;5.53157342738324e-18!GO:0042470;melanosome;5.53157342738324e-18!GO:0012501;programmed cell death;7.01317786236114e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.5516282798964e-17!GO:0006915;apoptosis;1.55980222954639e-17!GO:0043285;biopolymer catabolic process;1.87782710151761e-17!GO:0044265;cellular macromolecule catabolic process;1.96504989012132e-17!GO:0006259;DNA metabolic process;2.98272225667311e-17!GO:0032553;ribonucleotide binding;3.56051698086451e-17!GO:0032555;purine ribonucleotide binding;3.56051698086451e-17!GO:0017076;purine nucleotide binding;7.46386601950597e-17!GO:0006512;ubiquitin cycle;9.20573726993269e-17!GO:0022618;protein-RNA complex assembly;1.56938229506783e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.63092477753122e-16!GO:0008219;cell death;2.11346204894778e-16!GO:0016265;death;2.11346204894778e-16!GO:0019941;modification-dependent protein catabolic process;2.40547369058206e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.40547369058206e-16!GO:0016070;RNA metabolic process;4.31808399806304e-16!GO:0044257;cellular protein catabolic process;5.38390622539404e-16!GO:0009057;macromolecule catabolic process;5.81283559047245e-16!GO:0006511;ubiquitin-dependent protein catabolic process;6.16041003061657e-16!GO:0006605;protein targeting;1.02521110166399e-15!GO:0005746;mitochondrial respiratory chain;1.10032049274348e-15!GO:0044432;endoplasmic reticulum part;1.23907045365615e-15!GO:0051186;cofactor metabolic process;1.2703404581009e-15!GO:0007049;cell cycle;2.59845950480155e-15!GO:0043412;biopolymer modification;2.61429588353686e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.43844755316482e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.74564112352258e-15!GO:0051082;unfolded protein binding;7.11575139282996e-15!GO:0005761;mitochondrial ribosome;1.36040788282901e-14!GO:0000313;organellar ribosome;1.36040788282901e-14!GO:0030163;protein catabolic process;1.67306226672701e-14!GO:0042254;ribosome biogenesis and assembly;2.42875746553078e-14!GO:0008135;translation factor activity, nucleic acid binding;2.43547690953249e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.59494233366017e-14!GO:0044248;cellular catabolic process;2.79549686796423e-14!GO:0048193;Golgi vesicle transport;3.36067172402327e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.5049092689749e-14!GO:0003954;NADH dehydrogenase activity;3.5049092689749e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.5049092689749e-14!GO:0016192;vesicle-mediated transport;5.46061820798397e-14!GO:0006464;protein modification process;1.33443961380911e-13!GO:0005524;ATP binding;2.57423764958609e-13!GO:0032559;adenyl ribonucleotide binding;5.19541623054632e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.21839001828093e-13!GO:0030554;adenyl nucleotide binding;1.34471755545039e-12!GO:0006732;coenzyme metabolic process;1.47241693984152e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.15333490918746e-12!GO:0042773;ATP synthesis coupled electron transport;2.15333490918746e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.25745581649794e-12!GO:0045271;respiratory chain complex I;2.25745581649794e-12!GO:0005747;mitochondrial respiratory chain complex I;2.25745581649794e-12!GO:0009055;electron carrier activity;2.48928602395459e-12!GO:0048523;negative regulation of cellular process;3.87644206386842e-12!GO:0043067;regulation of programmed cell death;4.19791620296966e-12!GO:0042981;regulation of apoptosis;5.15648399647429e-12!GO:0005793;ER-Golgi intermediate compartment;6.69399292179455e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.12650547822235e-12!GO:0022402;cell cycle process;8.70664902570091e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;8.70664902570091e-12!GO:0000375;RNA splicing, via transesterification reactions;8.70664902570091e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.70664902570091e-12!GO:0006366;transcription from RNA polymerase II promoter;9.55689704317035e-12!GO:0006913;nucleocytoplasmic transport;2.04428896133772e-11!GO:0006399;tRNA metabolic process;2.33481031414004e-11!GO:0043687;post-translational protein modification;2.85918623972455e-11!GO:0003743;translation initiation factor activity;3.705634048809e-11!GO:0003712;transcription cofactor activity;3.72560612674847e-11!GO:0051169;nuclear transport;4.2631349920606e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.67178473829427e-11!GO:0051726;regulation of cell cycle;7.76781938732134e-11!GO:0005789;endoplasmic reticulum membrane;8.67571924557679e-11!GO:0000074;regulation of progression through cell cycle;1.06979715247811e-10!GO:0008639;small protein conjugating enzyme activity;1.18314155824124e-10!GO:0048519;negative regulation of biological process;1.75291524879887e-10!GO:0006974;response to DNA damage stimulus;2.0293675817886e-10!GO:0006413;translational initiation;2.27319892930264e-10!GO:0006461;protein complex assembly;2.81014579195815e-10!GO:0050794;regulation of cellular process;3.1844418296997e-10!GO:0004842;ubiquitin-protein ligase activity;3.37239976210833e-10!GO:0009259;ribonucleotide metabolic process;3.70156291540679e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.016830413993e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.40073189480753e-10!GO:0016604;nuclear body;5.40073189480753e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.65879505490309e-10!GO:0017038;protein import;5.78769638791429e-10!GO:0005635;nuclear envelope;7.55312230259753e-10!GO:0019787;small conjugating protein ligase activity;9.03514568027751e-10!GO:0006163;purine nucleotide metabolic process;9.7628559172173e-10!GO:0007005;mitochondrion organization and biogenesis;1.01952559668505e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.18369295277748e-09!GO:0003924;GTPase activity;1.22072249011706e-09!GO:0009150;purine ribonucleotide metabolic process;1.66460139923808e-09!GO:0006446;regulation of translational initiation;1.91745182383203e-09!GO:0006364;rRNA processing;1.9392173275002e-09!GO:0051246;regulation of protein metabolic process;2.05961461891836e-09!GO:0016072;rRNA metabolic process;2.62197182116369e-09!GO:0031965;nuclear membrane;3.17217670361848e-09!GO:0016887;ATPase activity;3.48563781171488e-09!GO:0042623;ATPase activity, coupled;3.73877441329807e-09!GO:0006164;purine nucleotide biosynthetic process;4.09675358231866e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.54070772809303e-09!GO:0008565;protein transporter activity;4.54070772809303e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.54070772809303e-09!GO:0009260;ribonucleotide biosynthetic process;5.40561917828093e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.67783807457632e-09!GO:0043069;negative regulation of programmed cell death;6.7178593700813e-09!GO:0044453;nuclear membrane part;8.90962304219873e-09!GO:0016881;acid-amino acid ligase activity;1.17058456696766e-08!GO:0009141;nucleoside triphosphate metabolic process;1.17105910318823e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.28399799095844e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.28399799095844e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.28399799095844e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.28399799095844e-08!GO:0044431;Golgi apparatus part;1.37454554646748e-08!GO:0005768;endosome;1.48035303008035e-08!GO:0009056;catabolic process;1.50512228665436e-08!GO:0051188;cofactor biosynthetic process;1.51226310739661e-08!GO:0043038;amino acid activation;1.55601846236863e-08!GO:0006418;tRNA aminoacylation for protein translation;1.55601846236863e-08!GO:0043039;tRNA aminoacylation;1.55601846236863e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.55674649316438e-08!GO:0006916;anti-apoptosis;1.55949249007403e-08!GO:0043066;negative regulation of apoptosis;1.62515038110402e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.22861367290447e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.22861367290447e-08!GO:0000278;mitotic cell cycle;2.22861367290447e-08!GO:0048522;positive regulation of cellular process;2.40793147623833e-08!GO:0004386;helicase activity;2.88746705435093e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.29037446762609e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.81713269344719e-08!GO:0016740;transferase activity;4.56698722991923e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.4876843297939e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.65038788463213e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.65038788463213e-08!GO:0006281;DNA repair;6.56124188909869e-08!GO:0009117;nucleotide metabolic process;6.86372497411058e-08!GO:0015986;ATP synthesis coupled proton transport;7.97216042806091e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.97216042806091e-08!GO:0007243;protein kinase cascade;8.10255643536119e-08!GO:0005643;nuclear pore;8.80226689489723e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.01637382872855e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.01637382872855e-07!GO:0030120;vesicle coat;1.06381901545108e-07!GO:0030662;coated vesicle membrane;1.06381901545108e-07!GO:0009719;response to endogenous stimulus;1.38011714627282e-07!GO:0065002;intracellular protein transport across a membrane;1.46735920137594e-07!GO:0016607;nuclear speck;1.89020375310328e-07!GO:0046034;ATP metabolic process;1.91571877290129e-07!GO:0008026;ATP-dependent helicase activity;2.06146415628585e-07!GO:0009108;coenzyme biosynthetic process;2.41443201073579e-07!GO:0051170;nuclear import;3.28350768591378e-07!GO:0045786;negative regulation of progression through cell cycle;3.34690734729916e-07!GO:0004298;threonine endopeptidase activity;3.54119485808087e-07!GO:0005788;endoplasmic reticulum lumen;4.23813693654793e-07!GO:0051276;chromosome organization and biogenesis;4.69818399872143e-07!GO:0009060;aerobic respiration;4.88544762965346e-07!GO:0019829;cation-transporting ATPase activity;4.88544762965346e-07!GO:0006606;protein import into nucleus;6.26925366768411e-07!GO:0005525;GTP binding;6.26925366768411e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;6.73036780142012e-07!GO:0000139;Golgi membrane;7.80621776305787e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.80844280368209e-07!GO:0006754;ATP biosynthetic process;7.80844280368209e-07!GO:0006753;nucleoside phosphate metabolic process;7.80844280368209e-07!GO:0050789;regulation of biological process;9.33906911488315e-07!GO:0048475;coated membrane;9.66232570798681e-07!GO:0030117;membrane coat;9.66232570798681e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.16469377097851e-06!GO:0016563;transcription activator activity;1.26319348305094e-06!GO:0031988;membrane-bound vesicle;1.4440910196466e-06!GO:0043566;structure-specific DNA binding;1.53781716396872e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.55586778244511e-06!GO:0016779;nucleotidyltransferase activity;1.57276617955092e-06!GO:0046930;pore complex;1.68117900458533e-06!GO:0003713;transcription coactivator activity;1.70478215981721e-06!GO:0006403;RNA localization;1.74702789524049e-06!GO:0045333;cellular respiration;1.79339568506144e-06!GO:0006323;DNA packaging;2.10790411533661e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.1452158970668e-06!GO:0016787;hydrolase activity;2.21620320657211e-06!GO:0006793;phosphorus metabolic process;2.62546576277113e-06!GO:0006796;phosphate metabolic process;2.62546576277113e-06!GO:0050657;nucleic acid transport;2.86505257125564e-06!GO:0051236;establishment of RNA localization;2.86505257125564e-06!GO:0050658;RNA transport;2.86505257125564e-06!GO:0032446;protein modification by small protein conjugation;3.09616898119799e-06!GO:0006260;DNA replication;3.26009634377697e-06!GO:0045454;cell redox homeostasis;3.35807522170895e-06!GO:0031324;negative regulation of cellular metabolic process;3.4703261115467e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.93175387668693e-06!GO:0043623;cellular protein complex assembly;3.95979587194402e-06!GO:0032561;guanyl ribonucleotide binding;4.16662624741226e-06!GO:0019001;guanyl nucleotide binding;4.16662624741226e-06!GO:0016567;protein ubiquitination;4.23526102996555e-06!GO:0065004;protein-DNA complex assembly;5.15940362427925e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.96802875156639e-06!GO:0045259;proton-transporting ATP synthase complex;6.18466296172734e-06!GO:0005694;chromosome;6.28650506149372e-06!GO:0000245;spliceosome assembly;6.46023708016494e-06!GO:0016564;transcription repressor activity;7.44591598539938e-06!GO:0051789;response to protein stimulus;7.71232945636759e-06!GO:0006986;response to unfolded protein;7.71232945636759e-06!GO:0005667;transcription factor complex;8.07709406195846e-06!GO:0005770;late endosome;9.11028909392534e-06!GO:0019899;enzyme binding;1.10561016779646e-05!GO:0006752;group transfer coenzyme metabolic process;1.17064762840465e-05!GO:0031982;vesicle;1.20875448147089e-05!GO:0003697;single-stranded DNA binding;1.36069326615721e-05!GO:0006333;chromatin assembly or disassembly;1.43604672448399e-05!GO:0031410;cytoplasmic vesicle;1.50048172391496e-05!GO:0048518;positive regulation of biological process;1.52478213199917e-05!GO:0016310;phosphorylation;1.61870922541098e-05!GO:0009967;positive regulation of signal transduction;1.83644458060931e-05!GO:0005762;mitochondrial large ribosomal subunit;2.03736245917956e-05!GO:0000315;organellar large ribosomal subunit;2.03736245917956e-05!GO:0000785;chromatin;2.0628276946333e-05!GO:0005773;vacuole;2.09025742633526e-05!GO:0006099;tricarboxylic acid cycle;2.37384285816186e-05!GO:0046356;acetyl-CoA catabolic process;2.37384285816186e-05!GO:0009892;negative regulation of metabolic process;2.63642623680881e-05!GO:0051427;hormone receptor binding;2.67889105668453e-05!GO:0006613;cotranslational protein targeting to membrane;3.12223192632927e-05!GO:0003714;transcription corepressor activity;3.48162536044396e-05!GO:0016491;oxidoreductase activity;3.74924588598735e-05!GO:0006084;acetyl-CoA metabolic process;3.84849839806357e-05!GO:0016853;isomerase activity;3.92394323835388e-05!GO:0000087;M phase of mitotic cell cycle;4.07166109729118e-05!GO:0005798;Golgi-associated vesicle;4.34740142679133e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.86180938068312e-05!GO:0007067;mitosis;5.06875509196281e-05!GO:0044427;chromosomal part;5.10088585913525e-05!GO:0044440;endosomal part;5.25387171679795e-05!GO:0010008;endosome membrane;5.25387171679795e-05!GO:0035257;nuclear hormone receptor binding;5.5984191611031e-05!GO:0051187;cofactor catabolic process;6.38670882519625e-05!GO:0051028;mRNA transport;6.76631880030331e-05!GO:0003724;RNA helicase activity;7.24954943841283e-05!GO:0005769;early endosome;7.57469831154448e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.99495355976562e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.88344173514811e-05!GO:0000314;organellar small ribosomal subunit;0.000105613823919806!GO:0005763;mitochondrial small ribosomal subunit;0.000105613823919806!GO:0048468;cell development;0.000111261121302102!GO:0008361;regulation of cell size;0.000114631510800681!GO:0031252;leading edge;0.000116038745635451!GO:0030867;rough endoplasmic reticulum membrane;0.000116277533685366!GO:0009109;coenzyme catabolic process;0.000128321160564695!GO:0000323;lytic vacuole;0.000133257806957405!GO:0005764;lysosome;0.000133257806957405!GO:0043065;positive regulation of apoptosis;0.000141637128186865!GO:0009615;response to virus;0.000142496927864594!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000152307396079963!GO:0051301;cell division;0.000163129482530524!GO:0022403;cell cycle phase;0.000166351606925998!GO:0016049;cell growth;0.000166522668468841!GO:0016859;cis-trans isomerase activity;0.000169959167671458!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000172835741245028!GO:0016568;chromatin modification;0.000172835741245028!GO:0000151;ubiquitin ligase complex;0.000183390465459452!GO:0043068;positive regulation of programmed cell death;0.000183390465459452!GO:0033116;ER-Golgi intermediate compartment membrane;0.000196377486066307!GO:0043021;ribonucleoprotein binding;0.000204022558246075!GO:0006839;mitochondrial transport;0.000210015383512456!GO:0006091;generation of precursor metabolites and energy;0.000279834569439022!GO:0008033;tRNA processing;0.000279834569439022!GO:0005048;signal sequence binding;0.000314160504457724!GO:0016481;negative regulation of transcription;0.000336703183811549!GO:0006612;protein targeting to membrane;0.00034459378478887!GO:0008637;apoptotic mitochondrial changes;0.000365064511083498!GO:0005813;centrosome;0.000377603887124418!GO:0065009;regulation of a molecular function;0.000391366802312487!GO:0006891;intra-Golgi vesicle-mediated transport;0.0004187131286998!GO:0030036;actin cytoskeleton organization and biogenesis;0.00042347059848795!GO:0065007;biological regulation;0.00043242070460331!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000437764533831421!GO:0015399;primary active transmembrane transporter activity;0.000437764533831421!GO:0043681;protein import into mitochondrion;0.000439869402406997!GO:0019222;regulation of metabolic process;0.000465576764561824!GO:0008632;apoptotic program;0.000503345404037641!GO:0003899;DNA-directed RNA polymerase activity;0.000508807232737068!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000527576487393196!GO:0015630;microtubule cytoskeleton;0.000532188352201816!GO:0008654;phospholipid biosynthetic process;0.000556574812254808!GO:0031072;heat shock protein binding;0.000564052438505498!GO:0008250;oligosaccharyl transferase complex;0.000628343290138856!GO:0006626;protein targeting to mitochondrion;0.000631299379972599!GO:0006334;nucleosome assembly;0.000668325489105258!GO:0009165;nucleotide biosynthetic process;0.000669761931064411!GO:0005885;Arp2/3 protein complex;0.000691779544085844!GO:0016044;membrane organization and biogenesis;0.000715045091383808!GO:0001558;regulation of cell growth;0.000801592781922445!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000813884474398471!GO:0051920;peroxiredoxin activity;0.000827035096965611!GO:0005741;mitochondrial outer membrane;0.000833337937701465!GO:0006414;translational elongation;0.00084027539912374!GO:0048471;perinuclear region of cytoplasm;0.000867829514872461!GO:0031497;chromatin assembly;0.000877677738578769!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000883640194783749!GO:0004576;oligosaccharyl transferase activity;0.00088904609309983!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000906777037579997!GO:0015980;energy derivation by oxidation of organic compounds;0.000925924864084974!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00105377633430154!GO:0019867;outer membrane;0.00110568250182118!GO:0044452;nucleolar part;0.00113221832691156!GO:0005815;microtubule organizing center;0.00113221832691156!GO:0007006;mitochondrial membrane organization and biogenesis;0.00116315478193558!GO:0000049;tRNA binding;0.00116315478193558!GO:0045893;positive regulation of transcription, DNA-dependent;0.00118142189284279!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00123822279917534!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125800236430941!GO:0007264;small GTPase mediated signal transduction;0.00126699795126179!GO:0031968;organelle outer membrane;0.00130809614062498!GO:0030663;COPI coated vesicle membrane;0.00134813046145306!GO:0030126;COPI vesicle coat;0.00134813046145306!GO:0018196;peptidyl-asparagine modification;0.00134813046145306!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00134813046145306!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00138070889253906!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00138070889253906!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00138070889253906!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00138671197698095!GO:0006401;RNA catabolic process;0.00138692520160431!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00143880202079032!GO:0019843;rRNA binding;0.00146794326147401!GO:0006417;regulation of translation;0.00147686624599381!GO:0008186;RNA-dependent ATPase activity;0.00153181212082821!GO:0045941;positive regulation of transcription;0.00154423269519647!GO:0003729;mRNA binding;0.00160356500766098!GO:0030132;clathrin coat of coated pit;0.00168759441499267!GO:0005905;coated pit;0.00178719809221479!GO:0051168;nuclear export;0.00179354489314898!GO:0003690;double-stranded DNA binding;0.00185982539615239!GO:0006402;mRNA catabolic process;0.00186846019074305!GO:0030137;COPI-coated vesicle;0.00205914412738886!GO:0045045;secretory pathway;0.00230230874492653!GO:0030659;cytoplasmic vesicle membrane;0.00231436825914372!GO:0042802;identical protein binding;0.00261073520559814!GO:0007050;cell cycle arrest;0.0026116361535854!GO:0030029;actin filament-based process;0.00270091000835569!GO:0030880;RNA polymerase complex;0.00288718222727978!GO:0008092;cytoskeletal protein binding;0.00288718222727978!GO:0043492;ATPase activity, coupled to movement of substances;0.00298443103619838!GO:0051540;metal cluster binding;0.00303682278084964!GO:0051536;iron-sulfur cluster binding;0.00303682278084964!GO:0030133;transport vesicle;0.00304657478378448!GO:0030134;ER to Golgi transport vesicle;0.00329133608983277!GO:0006917;induction of apoptosis;0.00332033718393091!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00336216686245181!GO:0051329;interphase of mitotic cell cycle;0.00336323911549575!GO:0000059;protein import into nucleus, docking;0.00340048966743894!GO:0016197;endosome transport;0.00344558469356129!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00353003367334349!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00353003367334349!GO:0051101;regulation of DNA binding;0.00356865293511198!GO:0016363;nuclear matrix;0.00370894791352384!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00376215605863826!GO:0001836;release of cytochrome c from mitochondria;0.00381717205610542!GO:0048500;signal recognition particle;0.00381717205610542!GO:0048487;beta-tubulin binding;0.00391758943982087!GO:0030658;transport vesicle membrane;0.00391839617888813!GO:0004004;ATP-dependent RNA helicase activity;0.00397749162241146!GO:0043284;biopolymer biosynthetic process;0.003979579667605!GO:0051087;chaperone binding;0.00427891413206302!GO:0006520;amino acid metabolic process;0.00431253733080146!GO:0030127;COPII vesicle coat;0.00448985864551908!GO:0012507;ER to Golgi transport vesicle membrane;0.00448985864551908!GO:0012502;induction of programmed cell death;0.0044999794624851!GO:0031326;regulation of cellular biosynthetic process;0.00462302795439865!GO:0032940;secretion by cell;0.00463805139764281!GO:0045792;negative regulation of cell size;0.00473630713852668!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00480696286641427!GO:0009889;regulation of biosynthetic process;0.00484515963325484!GO:0006818;hydrogen transport;0.00490207817586968!GO:0030308;negative regulation of cell growth;0.00492137452673005!GO:0005684;U2-dependent spliceosome;0.0051038371188572!GO:0046474;glycerophospholipid biosynthetic process;0.00544330629218526!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00545775534829686!GO:0000428;DNA-directed RNA polymerase complex;0.00545775534829686!GO:0015992;proton transport;0.00549633015424575!GO:0000279;M phase;0.00556836031502299!GO:0008139;nuclear localization sequence binding;0.00569872170270546!GO:0008287;protein serine/threonine phosphatase complex;0.00586522399584114!GO:0006261;DNA-dependent DNA replication;0.00589673267120372!GO:0016272;prefoldin complex;0.00591031896898965!GO:0046483;heterocycle metabolic process;0.00614400131749315!GO:0044433;cytoplasmic vesicle part;0.00623477214387166!GO:0033673;negative regulation of kinase activity;0.0063628718192556!GO:0006469;negative regulation of protein kinase activity;0.0063628718192556!GO:0004177;aminopeptidase activity;0.0063717654895602!GO:0051287;NAD binding;0.00638890629046368!GO:0051325;interphase;0.00644097862944142!GO:0045892;negative regulation of transcription, DNA-dependent;0.00644281228279297!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0065599339331814!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0065599339331814!GO:0006383;transcription from RNA polymerase III promoter;0.00673280564321965!GO:0044262;cellular carbohydrate metabolic process;0.00750721971551515!GO:0008312;7S RNA binding;0.00800375131508429!GO:0009116;nucleoside metabolic process;0.00804563192642405!GO:0030176;integral to endoplasmic reticulum membrane;0.00824062906803144!GO:0017166;vinculin binding;0.00840997158915451!GO:0051252;regulation of RNA metabolic process;0.00841819830616661!GO:0040008;regulation of growth;0.00853605879163477!GO:0035258;steroid hormone receptor binding;0.00863453841393411!GO:0006595;polyamine metabolic process;0.00864861585803919!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00866446455719785!GO:0043488;regulation of mRNA stability;0.00874718735129425!GO:0043487;regulation of RNA stability;0.00874718735129425!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00926178059025357!GO:0009112;nucleobase metabolic process;0.00933230882941537!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00934250860067649!GO:0045047;protein targeting to ER;0.00934250860067649!GO:0009966;regulation of signal transduction;0.00938822156028079!GO:0005791;rough endoplasmic reticulum;0.00950456764584234!GO:0006650;glycerophospholipid metabolic process;0.00951398893672081!GO:0006740;NADPH regeneration;0.0096900622146219!GO:0006098;pentose-phosphate shunt;0.0096900622146219!GO:0030521;androgen receptor signaling pathway;0.00991535879377384!GO:0003746;translation elongation factor activity;0.0100609772812585!GO:0008243;plasminogen activator activity;0.0100820484633523!GO:0031625;ubiquitin protein ligase binding;0.0102942095913725!GO:0007242;intracellular signaling cascade;0.0103300060066924!GO:0006082;organic acid metabolic process;0.0104027012079977!GO:0030660;Golgi-associated vesicle membrane;0.0104027012079977!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0104627035650685!GO:0008601;protein phosphatase type 2A regulator activity;0.0107056255861221!GO:0019752;carboxylic acid metabolic process;0.0107224164480262!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0108831030182169!GO:0006950;response to stress;0.0113987760160896!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.011464634590717!GO:0051348;negative regulation of transferase activity;0.0116102302363671!GO:0043433;negative regulation of transcription factor activity;0.0117722682334512!GO:0046489;phosphoinositide biosynthetic process;0.011974881817072!GO:0006352;transcription initiation;0.0120607417752014!GO:0046467;membrane lipid biosynthetic process;0.0121572126191363!GO:0006984;ER-nuclear signaling pathway;0.0121816460557219!GO:0004518;nuclease activity;0.0121822152423528!GO:0004674;protein serine/threonine kinase activity;0.0122461879883613!GO:0004532;exoribonuclease activity;0.0125403594819205!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0125403594819205!GO:0046822;regulation of nucleocytoplasmic transport;0.0125403594819205!GO:0005869;dynactin complex;0.0125403594819205!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0125403594819205!GO:0015002;heme-copper terminal oxidase activity;0.0125403594819205!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0125403594819205!GO:0004129;cytochrome-c oxidase activity;0.0125403594819205!GO:0030118;clathrin coat;0.0126457811653517!GO:0004860;protein kinase inhibitor activity;0.0126848455038427!GO:0043022;ribosome binding;0.0130131965605081!GO:0001726;ruffle;0.0130487239059549!GO:0006509;membrane protein ectodomain proteolysis;0.0138720828725439!GO:0033619;membrane protein proteolysis;0.0138720828725439!GO:0050662;coenzyme binding;0.0140325919796216!GO:0012506;vesicle membrane;0.0140428904560978!GO:0051090;regulation of transcription factor activity;0.0141053913288617!GO:0008180;signalosome;0.0141777245634237!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0142997233215351!GO:0045926;negative regulation of growth;0.0144125060494587!GO:0007010;cytoskeleton organization and biogenesis;0.0146887177913162!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0147488935165498!GO:0010257;NADH dehydrogenase complex assembly;0.0147488935165498!GO:0033108;mitochondrial respiratory chain complex assembly;0.0147488935165498!GO:0006289;nucleotide-excision repair;0.0147536056970795!GO:0005832;chaperonin-containing T-complex;0.0153804771195107!GO:0051539;4 iron, 4 sulfur cluster binding;0.0156397227578165!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0156397227578165!GO:0008047;enzyme activator activity;0.0160321465089152!GO:0005819;spindle;0.0161824501840626!GO:0005637;nuclear inner membrane;0.0164322931446101!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0164777365424994!GO:0051098;regulation of binding;0.0170543874552481!GO:0030031;cell projection biogenesis;0.0171075785776179!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0171075785776179!GO:0006144;purine base metabolic process;0.0174761748113524!GO:0022415;viral reproductive process;0.0175744400961627!GO:0046519;sphingoid metabolic process;0.0178197244932523!GO:0008408;3'-5' exonuclease activity;0.0181218111713048!GO:0006807;nitrogen compound metabolic process;0.0182560890358457!GO:0008283;cell proliferation;0.0184366790996866!GO:0031902;late endosome membrane;0.0187001992421602!GO:0000786;nucleosome;0.0194062153710407!GO:0006302;double-strand break repair;0.0194104223369666!GO:0003678;DNA helicase activity;0.0198481635534157!GO:0046983;protein dimerization activity;0.0206372765515277!GO:0031323;regulation of cellular metabolic process;0.0206917476172385!GO:0004527;exonuclease activity;0.0208629916033658!GO:0030032;lamellipodium biogenesis;0.021280419575254!GO:0051059;NF-kappaB binding;0.0215425858432478!GO:0031901;early endosome membrane;0.0226177615842182!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0229200008907938!GO:0008022;protein C-terminus binding;0.0229206057747468!GO:0003711;transcription elongation regulator activity;0.0230685617859817!GO:0030125;clathrin vesicle coat;0.0230685617859817!GO:0030665;clathrin coated vesicle membrane;0.0230685617859817!GO:0016301;kinase activity;0.0234743037072766!GO:0000159;protein phosphatase type 2A complex;0.0235405623869772!GO:0006749;glutathione metabolic process;0.0235915439006118!GO:0031529;ruffle organization and biogenesis;0.0237114318302001!GO:0030100;regulation of endocytosis;0.023721236060609!GO:0022890;inorganic cation transmembrane transporter activity;0.0238643698559381!GO:0030119;AP-type membrane coat adaptor complex;0.0238845752961304!GO:0006611;protein export from nucleus;0.0239863933779832!GO:0006672;ceramide metabolic process;0.0244960487743034!GO:0003684;damaged DNA binding;0.0247248720772728!GO:0006376;mRNA splice site selection;0.02493409236966!GO:0000389;nuclear mRNA 3'-splice site recognition;0.02493409236966!GO:0000082;G1/S transition of mitotic cell cycle;0.0256089430431167!GO:0007265;Ras protein signal transduction;0.0257165549415233!GO:0050790;regulation of catalytic activity;0.0259206144795676!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0259206144795676!GO:0006497;protein amino acid lipidation;0.0261581961111162!GO:0004722;protein serine/threonine phosphatase activity;0.0261581961111162!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0263992331737293!GO:0007162;negative regulation of cell adhesion;0.0265872346435862!GO:0009166;nucleotide catabolic process;0.0267002676386249!GO:0030027;lamellipodium;0.0268244776096723!GO:0022406;membrane docking;0.0276350251767965!GO:0048278;vesicle docking;0.0276350251767965!GO:0000096;sulfur amino acid metabolic process;0.0286314816592632!GO:0035035;histone acetyltransferase binding;0.0289953301959679!GO:0003756;protein disulfide isomerase activity;0.0289953301959679!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0289953301959679!GO:0005862;muscle thin filament tropomyosin;0.0291138548588843!GO:0000287;magnesium ion binding;0.0291407667070999!GO:0045334;clathrin-coated endocytic vesicle;0.029160886198775!GO:0032200;telomere organization and biogenesis;0.0295149580095781!GO:0000723;telomere maintenance;0.0295149580095781!GO:0051092;activation of NF-kappaB transcription factor;0.0295415365047079!GO:0006892;post-Golgi vesicle-mediated transport;0.0298176613499236!GO:0032507;maintenance of cellular protein localization;0.0302376453451259!GO:0006897;endocytosis;0.0302376453451259!GO:0010324;membrane invagination;0.0302376453451259!GO:0009119;ribonucleoside metabolic process;0.0304856835630327!GO:0009451;RNA modification;0.0308855614609748!GO:0032906;transforming growth factor-beta2 production;0.0308855614609748!GO:0032909;regulation of transforming growth factor-beta2 production;0.0308855614609748!GO:0008538;proteasome activator activity;0.0313403401625196!GO:0016251;general RNA polymerase II transcription factor activity;0.0313403401625196!GO:0009308;amine metabolic process;0.0325590154853532!GO:0015631;tubulin binding;0.0330393464995557!GO:0046966;thyroid hormone receptor binding;0.0330558226164454!GO:0030503;regulation of cell redox homeostasis;0.0332665154012762!GO:0007040;lysosome organization and biogenesis;0.0335032998136032!GO:0006739;NADP metabolic process;0.0336279212019834!GO:0046979;TAP2 binding;0.0336282563823956!GO:0046977;TAP binding;0.0336282563823956!GO:0046978;TAP1 binding;0.0336282563823956!GO:0007021;tubulin folding;0.0341071782464568!GO:0008652;amino acid biosynthetic process;0.0349412101843678!GO:0000209;protein polyubiquitination;0.0352055842296823!GO:0006904;vesicle docking during exocytosis;0.0352898144172818!GO:0008629;induction of apoptosis by intracellular signals;0.0353210799941867!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0354850010498257!GO:0051128;regulation of cellular component organization and biogenesis;0.0357804206062237!GO:0007033;vacuole organization and biogenesis;0.0357804206062237!GO:0006519;amino acid and derivative metabolic process;0.0361734382976104!GO:0009893;positive regulation of metabolic process;0.0369266454673935!GO:0003702;RNA polymerase II transcription factor activity;0.037049451631872!GO:0000178;exosome (RNase complex);0.0383496601718535!GO:0006284;base-excision repair;0.0384352738699701!GO:0000175;3'-5'-exoribonuclease activity;0.0385033442968314!GO:0045936;negative regulation of phosphate metabolic process;0.0385606715920908!GO:0000339;RNA cap binding;0.0385606715920908!GO:0031543;peptidyl-proline dioxygenase activity;0.0388851251045693!GO:0006979;response to oxidative stress;0.0403004867142382!GO:0030433;ER-associated protein catabolic process;0.0404513575167203!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0404513575167203!GO:0030518;steroid hormone receptor signaling pathway;0.040513852204874!GO:0007088;regulation of mitosis;0.0406987958718238!GO:0050681;androgen receptor binding;0.0411823755534725!GO:0030131;clathrin adaptor complex;0.0417191436727602!GO:0045185;maintenance of protein localization;0.0418559515358257!GO:0007030;Golgi organization and biogenesis;0.042046024383266!GO:0003725;double-stranded RNA binding;0.0422423814254533!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0430837615973424!GO:0047485;protein N-terminus binding;0.0437908802388074!GO:0005669;transcription factor TFIID complex;0.0448616427532519!GO:0009303;rRNA transcription;0.0453160964522814!GO:0032508;DNA duplex unwinding;0.0454372003618393!GO:0032392;DNA geometric change;0.0454372003618393!GO:0030911;TPR domain binding;0.0454603274271597!GO:0051235;maintenance of localization;0.0456223534339102!GO:0006458;'de novo' protein folding;0.0456223534339102!GO:0051084;'de novo' posttranslational protein folding;0.0456223534339102!GO:0000075;cell cycle checkpoint;0.0463309749360065!GO:0050811;GABA receptor binding;0.0465649924764847!GO:0006405;RNA export from nucleus;0.0474883036396057!GO:0006220;pyrimidine nucleotide metabolic process;0.0476470712433293!GO:0019798;procollagen-proline dioxygenase activity;0.0480295944984181!GO:0008286;insulin receptor signaling pathway;0.0480295944984181!GO:0051338;regulation of transferase activity;0.0483725287521808!GO:0030145;manganese ion binding;0.0483725287521808!GO:0006541;glutamine metabolic process;0.0487970963928134!GO:0046426;negative regulation of JAK-STAT cascade;0.0487970963928134!GO:0000781;chromosome, telomeric region;0.0489814018882555!GO:0004680;casein kinase activity;0.0492783660711295!GO:0019210;kinase inhibitor activity;0.0493362134906927!GO:0005784;translocon complex;0.0493484898512115!GO:0030128;clathrin coat of endocytic vesicle;0.0495311785063264!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0495311785063264!GO:0030122;AP-2 adaptor complex;0.0495311785063264!GO:0005774;vacuolar membrane;0.0495311785063264!GO:0018193;peptidyl-amino acid modification;0.0495311785063264!GO:0030041;actin filament polymerization;0.0495311785063264
 |sample_id=10691
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=brain
 |top_motifs=ONECUT1,2:2.09983241522;EN1,2:1.75871909186;UFEwm:1.15620811758;ALX4:1.12355292968;GLI1..3:1.05787877372;CDX1,2,4:1.05347938515;IRF7:0.993349708553;IRF1,2:0.985084257745;bHLH_family:0.973826580691;ZIC1..3:0.838488528227;EVI1:0.83821936994;AIRE:0.820574367614;RXR{A,B,G}:0.772942316892;NR6A1:0.740202685758;FOXQ1:0.738544702734;HES1:0.716205148258;TEF:0.67667923712;TBX4,5:0.662651293332;IKZF1:0.634246430602;PPARG:0.612606718457;NFE2L1:0.5810658077;RXRA_VDR{dimer}:0.558633145501;TP53:0.557664803501;ZNF148:0.550687061762;POU2F1..3:0.502702980979;T:0.499260655969;GZF1:0.478483514698;XCPE1{core}:0.464680986302;BACH2:0.459182910045;HOX{A6,A7,B6,B7}:0.435902897543;ATF6:0.431462110943;ZBTB6:0.42005656806;ZEB1:0.418956243135;FOXD3:0.41495864774;FOXO1,3,4:0.39115615327;ARID5B:0.363095915177;GTF2A1,2:0.31394122788;PITX1..3:0.301605359079;FOXM1:0.296813431542;NKX6-1,2:0.266767772819;TLX1..3_NFIC{dimer}:0.259575493284;ESRRA:0.242175757651;TFCP2:0.22771585717;TLX2:0.220609042883;HOX{A4,D4}:0.208879308743;TEAD1:0.20823698933;FOS_FOS{B,L1}_JUN{B,D}:0.161779774386;AR:0.14542728269;MAFB:0.144395568221;HMX1:0.142325195576;MYOD1:0.140796719752;NFIX:0.137717868517;POU6F1:0.13009587897;PAX5:0.129093817823;HSF1,2:0.119274231153;NFKB1_REL_RELA:0.0963893431615;LHX3,4:0.09200949946;FOXP1:0.084421044139;TFAP2B:0.0807953004612;NR3C1:0.0793632441523;NFE2:0.0786690292753;EGR1..3:0.0762251852122;FOX{I1,J2}:0.0713370921492;EBF1:0.0698574508173;NKX2-1,4:0.0687624834928;FOX{D1,D2}:0.0686891063406;STAT2,4,6:0.0624672092397;LMO2:0.0363802052324;SP1:0.0329777188289;NFE2L2:0.0279365666468;SRF:0.0274758855725;GATA4:0.0182027796037;NR1H4:0.014310865639;FOSL2:0.011243816171;ZFP161:0.00250403382506;ZBTB16:0.000557203546381;HNF1A:-0.0102563228374;ALX1:-0.0135473206264;RBPJ:-0.0227909855839;NKX3-1:-0.0258020539296;TOPORS:-0.0265152588228;TFAP2{A,C}:-0.0337468160469;HNF4A_NR2F1,2:-0.050853903772;TFDP1:-0.0541505385419;NHLH1,2:-0.0810483012478;TBP:-0.0811394036921;IKZF2:-0.0865757812547;MED-1{core}:-0.0995787254836;REST:-0.102807555445;POU1F1:-0.111965006568;KLF4:-0.123938281806;HIC1:-0.132947893489;MAZ:-0.14426234787;SNAI1..3:-0.149918624316;MTF1:-0.157484256353;GTF2I:-0.166984714869;AHR_ARNT_ARNT2:-0.167573614464;PAX3,7:-0.170074363037;FOX{F1,F2,J1}:-0.173859412943;HIF1A:-0.17951637059;ESR1:-0.192041795823;ELK1,4_GABP{A,B1}:-0.236443583863;YY1:-0.239267973504;ELF1,2,4:-0.241575186821;TFAP4:-0.254037297297;XBP1:-0.272374083462;MTE{core}:-0.277418770272;HLF:-0.283528210376;VSX1,2:-0.284354196251;RREB1:-0.292371208148;ATF5_CREB3:-0.300286772805;GCM1,2:-0.305789799831;JUN:-0.312339103402;PATZ1:-0.327396557629;BPTF:-0.329980193664;SOX{8,9,10}:-0.339536107997;HAND1,2:-0.342668220003;SPI1:-0.348952133076;PRDM1:-0.349079259045;RUNX1..3:-0.357987322062;MYB:-0.364895769485;CEBPA,B_DDIT3:-0.369935010388;ZNF143:-0.39403879878;MYFfamily:-0.397455009487;NR5A1,2:-0.410015670655;SOX17:-0.414396943599;OCT4_SOX2{dimer}:-0.42221872757;MZF1:-0.432766777126;LEF1_TCF7_TCF7L1,2:-0.440950486332;MEF2{A,B,C,D}:-0.456638378715;ADNP_IRX_SIX_ZHX:-0.458291543289;NKX2-2,8:-0.45953697174;ZNF423:-0.461624758513;GATA6:-0.464307488016;CDC5L:-0.464562468003;TAL1_TCF{3,4,12}:-0.479967014262;ETS1,2:-0.49489737773;ATF4:-0.504270903642;HMGA1,2:-0.510459857477;SPIB:-0.542582211666;E2F1..5:-0.547496339306;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.582843742513;NFIL3:-0.594118659379;PAX4:-0.604506858832;DMAP1_NCOR{1,2}_SMARC:-0.608441896296;GFI1B:-0.612302755147;DBP:-0.622091951755;ZNF238:-0.650125371781;FOXL1:-0.65659258405;GFI1:-0.679038805747;CRX:-0.69475544835;SOX5:-0.69637713011;NFATC1..3:-0.700614124048;PBX1:-0.702577140684;NRF1:-0.71621493868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.723126810991;RFX1:-0.733530642783;SPZ1:-0.737429287059;BREu{core}:-0.73822257933;HOXA9_MEIS1:-0.742255583369;CUX2:-0.748716434189;PAX2:-0.78088959438;HOX{A5,B5}:-0.790143386184;MYBL2:-0.823366450373;SMAD1..7,9:-0.829879484874;NKX3-2:-0.842049841983;PAX1,9:-0.849069868108;PRRX1,2:-0.856051417195;STAT5{A,B}:-0.861869465394;POU5F1:-0.866467886797;PAX8:-0.886042163784;PDX1:-0.891538856809;EP300:-0.910730661862;NKX2-3_NKX2-5:-0.926829601109;RORA:-0.942249206075;PAX6:-0.974974494382;RFX2..5_RFXANK_RFXAP:-0.998472374129;NFY{A,B,C}:-1.01077572818;FOXA2:-1.0331675334;NANOG{mouse}:-1.03794306504;FOXN1:-1.05408367931;SOX2:-1.05985658301;FOXP3:-1.17273549719;POU3F1..4:-1.19501666325;ZNF384:-1.20697257173;TGIF1:-1.2142736307;ATF2:-1.2481264537;CREB1:-1.34137524335;NANOG:-1.36367368044;HBP1_HMGB_SSRP1_UBTF:-1.53619243573;SREBF1,2:-1.62639367752;STAT1,3:-2.57298775554
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10691-109F7;search_select_hide=table117:FF:10691-109F7
 }}

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FF:10691-109F7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0