FFCP PHASE1:Hg19::chr19:54062279..54062292,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:54062279..54062292,+
|short_description=p@chr19:54062279..54062292,+
|description=CAGE_peak_at_chr19:54062279..54062292,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:54062279..54062292,+ | |||
|coexpression_cluster_id=C437 | |||
|description=CAGE_peak_at_chr19:54062279..54062292,+ | |||
|id=chr19:54062279..54062292,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.46e-09!140;CL:0002087!1.62e-08!119;CL:0000624!1.85e-08!6;CL:0002031!3.67e-08!124 | |||
|ontology_enrichment_celltype_v019=CL:0000624;1.61e-22;6!CL:0000791;3.53e-18;18!CL:0000789;3.53e-18;18!CL:0002419;3.53e-18;18!CL:0000623;5.53e-17;3!CL:0000084;9.97e-13;25!CL:0000815;2.16e-11;2!CL:0000792;2.16e-11;2!CL:0002677;2.16e-11;2!CL:0000542;6.98e-10;53!CL:0000226;5.59e-08;3!CL:0000842;5.59e-08;3!CL:0000898;7.13e-08;3!CL:0002087;6.39e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.36e-22,6;CL:0002087,6.02e-19,115;CL:0000791,3.12e-18,18;CL:0000789,3.12e-18,18;CL:0002420,3.12e-18,18;CL:0002419,3.12e-18,18;CL:0000790,3.12e-18,18;CL:0000838,2.06e-17,52;CL:0000623,4.48e-17,3;CL:0000825,4.48e-17,3;CL:0000542,5.01e-17,53;CL:0000051,5.01e-17,53;CL:0000738,7.17e-17,136;CL:0002031,3.22e-16,120;CL:0000084,9.15e-13,25;CL:0000827,9.15e-13,25;CL:0000037,1.13e-12,168;CL:0000988,9.16e-12,177;CL:0000815,1.67e-11,2;CL:0000792,1.67e-11,2;CL:0002677,1.67e-11,2;CL:0002032,7.01e-11,161;CL:0000837,7.01e-11,161;CL:0000898,6.00e-08,3;CL:0000226,7.14e-08,3;CL:0000842,7.14e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.53e-18;18!CL:0000051;6.98e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.70e-12!115;UBERON:0001049!4.47e-08!57;UBERON:0005068!4.47e-08!57;UBERON:0006241!4.47e-08!57;UBERON:0007135!4.47e-08!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;6.09e-11;2!UBERON:0003978;1.41e-07;3!UBERON:0000946;1.41e-07;3!UBERON:0001894;4.60e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,4.49e-11,2;UBERON:0003978,1.15e-07,3;UBERON:0009751,1.15e-07,3;UBERON:0000946,1.15e-07,3;UBERON:0002523,1.15e-07,3;UBERON:0005983,1.15e-07,3;UBERON:0002165,1.15e-07,3;UBERON:0002062,1.15e-07,3;UBERON:0007280,1.15e-07,3;UBERON:0001894,4.51e-07,7;UBERON:0006222,4.51e-07,7 | |||
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|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0.767658796194425,0.309632246632152,0,0,0,0,0.142169232487422,0,0,1.00272223735071,1.51907609501096,0,0,0,0.145398238779565,0,0,0.232429036905685,0.411167888021826,0.619412741790207,0.575384784644301,0,0,0.689491361473237,1.29096936716765,1.35426486594342,0.564727018627814,0.545812300115692,0,0.612167784741805,0,0,0,0.997318288108159,0,0,0,0,4.01997864410789,1.0429658368404,0,0,0,0,0,0,0,0.22465726229299,0.150176892841506,0.32145117339416,0,0,0,0,0,0,0,0,0,0.661044872784862,0,3.41527781465669,2.93618594685469,2.6759125968766,0,0,0,7.47497126432566,6.28817220398664,8.22405995998037,0,3.58514493296949,1.89379122293893,0,0,1.47302953737419,0.221533894583621,1.62482318259009,0.25618263945135,0.260118695119756,0,0,0,1.33457906845854,0.802622484269139,2.09071047609954,0,0.383220493601921,0,0.253019692019503,0,0,0,0,0,0,0,0,3.62892137804518,5.08136371988664,7.82051780967114,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0.221729397462564,0.175669571386252,0,0,0,0,0,0.132957960518865,0.953962497221368,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0.492663237895943,0,2.28060927094849,0.144119953416961,0.50496973370552,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0.205476322550383,0,0,2.75843064282698,6.68445482064504,5.39040752374943,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,2.06768026122887,0.647142602455851,2.02782359826544,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0.251932747854276,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,1.11136990144637,0,0.185536196323703,0,0,0.0874599999961957,0,0,0,0,0,0,0.347249989866585,0.885741385813839,0.241192877250816,0,0.995213339381022,0.295547618953547,0,0,0.139423744278603,0.0769502585037971,0,0,0.0897576444097721,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0.296521128680622,0,0.104421949505455,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0.17472666824203,0.171986032471617,0.0967563312890851,0,0,0,0,0.225980740780532,0,0,0.189932387867636,0,0.0801588202515337,0.426905989478705,0,0,0,0.171594997861965,0,0.248505071130865,0.235694034616795,0,0.104602846312333,0,0,0,0.410716136675979,0,0,0,1.39641200636127,0.229160424011684,1.43574604915363,0.199679000498991,0,0,0.0671834724867263,0,1.16495949527454,0,0.0824158583811665,0.0674035438541849,0,0,0,0.408610218334727,0,0,0,0.674921674654501,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0.146552233678082,0,0.129282956361551,0.26446520348538,0,0,0,0.157204305099666,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0.573409195690071,0.554645257684261,0,0.553394539744923,0.124980407962107,0,0,0,0,0,0.149254802886874,0,0,0.189403005275089,0,0,0,0.151230923763239,0,0,0,0,0,1.24411862352257,0,0,0,0.761610424337591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0.163565394255844,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0,0.495743057036009,0,0,0.0788617450012534,0,0.705351887381368,0,0,0,0.638535436228605,0,0.252071696221718,0,0.322951291263702,0,0,0,0,0,0,0,0,0.526472298444801,0,0,0,0,0,0,0,0.620060389503552,0,0,0,0,0,0,0,1.00885116665647,1.82089681270989,0.91064876540519,0.0887023701626388,0,0,0.271878931907327,0,0,0,0.078493092850514,0.314231179832004,0,0,0,0.9555033757741,0,0.158013611732727,0,0.173858272302579,0,0.207216164163037,0,0,0,0.118332000730565,0,1.27016115057279,0,0,0,0.111855431797792,0,0,0.647428837187895,0,0,0,0,0.198950775161368,0,0,0,0,0.231522474323834,0,0,0.490296643507811,0,0.588925401344836,1.18818560130834,0,0,0,0,0,0,0,0,0,0.458729283404541,0.430018749454354,0,0.135982980381829,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0.101988829741982,0,0.0918948995348449,0,0.303114792872958,0.267964130156178,2.48750831837634,0.20686599172379,0,0,0.0645889098360061,0.124149428591716,0.112131862580613,0,3.43599221228973,0,0,0,0.0717222053926763,0,0.0814032686109745,0.8538187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|short_description=p@chr19:54062279..54062292,+ | |||
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Latest revision as of 17:00, 27 July 2015
Short description: | p@chr19:54062279..54062292, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54062279..54062292, + |
Coexpression cluster: | C437_CD4_CD8_Natural_CD19_thyroid_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.36e-22 | 6 |
nongranular leukocyte | 6.02e-19 | 115 |
mature alpha-beta T cell | 3.12e-18 | 18 |
alpha-beta T cell | 3.12e-18 | 18 |
immature T cell | 3.12e-18 | 18 |
mature T cell | 3.12e-18 | 18 |
immature alpha-beta T cell | 3.12e-18 | 18 |
lymphoid lineage restricted progenitor cell | 2.06e-17 | 52 |
natural killer cell | 4.48e-17 | 3 |
pro-NK cell | 4.48e-17 | 3 |
lymphocyte | 5.01e-17 | 53 |
common lymphoid progenitor | 5.01e-17 | 53 |
leukocyte | 7.17e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 3.22e-16 | 120 |
T cell | 9.15e-13 | 25 |
pro-T cell | 9.15e-13 | 25 |
hematopoietic stem cell | 1.13e-12 | 168 |
hematopoietic cell | 9.16e-12 | 177 |
regulatory T cell | 1.67e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.67e-11 | 2 |
naive regulatory T cell | 1.67e-11 | 2 |
hematopoietic oligopotent progenitor cell | 7.01e-11 | 161 |
hematopoietic multipotent progenitor cell | 7.01e-11 | 161 |
naive T cell | 6.00e-08 | 3 |
single nucleate cell | 7.14e-08 | 3 |
mononuclear cell | 7.14e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
atrioventricular valve | 4.49e-11 | 2 |
valve | 1.15e-07 | 3 |
cardiac mesenchyme | 1.15e-07 | 3 |
cardial valve | 1.15e-07 | 3 |
tunica intima | 1.15e-07 | 3 |
heart layer | 1.15e-07 | 3 |
endocardium | 1.15e-07 | 3 |
endocardial cushion | 1.15e-07 | 3 |
presumptive endocardium | 1.15e-07 | 3 |
diencephalon | 4.51e-07 | 7 |
future diencephalon | 4.51e-07 | 7 |