FF:10100-102D1: Difference between revisions

Latest revision as of 12:21, 3 June 2020

Name:	uterus, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs11676
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	uterus
dev stage	23-63 years old adult
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101369A-20
catalog number	Cat: 636643 Lot: 8101369A-20
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005111

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11676		CAGE		DRX008756		DRR009628

Accession ID Hg19

Library id		BAM		CTSS
CNhs11676		DRZ001053		DRZ002438

Accession ID Hg38

Library id		BAM		CTSS
CNhs11676		DRZ012403		DRZ013788

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.121
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.297
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.136
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0337
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.378
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0501
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0288
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.095
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0529
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.236
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0393
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0838
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.095
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.173
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.148
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.19
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0501
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0501
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0501
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.095
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.952
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.414
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.261
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.117
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.269
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0501
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.00762
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0501
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0501
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.54
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0501
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.207
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.207
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.207
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0501
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.322
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.392
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.136
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.136
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0501
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11676

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00685
MA0003.1	MA0003.1	0.815
MA0004.1	MA0004.1	0.2
MA0006.1	MA0006.1	0.984
MA0007.1	MA0007.1	0.197
MA0009.1	MA0009.1	0.15
MA0014.1	MA0014.1	0.221
MA0017.1	MA0017.1	0.0204
MA0018.2	MA0018.2	0.957
MA0019.1	MA0019.1	0.461
MA0024.1	MA0024.1	0.322
MA0025.1	MA0025.1	0.914
MA0027.1	MA0027.1	0.651
MA0028.1	MA0028.1	0.0298
MA0029.1	MA0029.1	0.516
MA0030.1	MA0030.1	1.24182e-4
MA0031.1	MA0031.1	0.0146
MA0035.2	MA0035.2	0.496
MA0038.1	MA0038.1	0.564
MA0039.2	MA0039.2	0.856
MA0040.1	MA0040.1	0.704
MA0041.1	MA0041.1	0.443
MA0042.1	MA0042.1	0.194
MA0043.1	MA0043.1	0.484
MA0046.1	MA0046.1	0.00941
MA0047.2	MA0047.2	0.243
MA0048.1	MA0048.1	0.397
MA0050.1	MA0050.1	0.73
MA0051.1	MA0051.1	0.768
MA0052.1	MA0052.1	1.29844e-4
MA0055.1	MA0055.1	0.0308
MA0057.1	MA0057.1	0.874
MA0058.1	MA0058.1	0.124
MA0059.1	MA0059.1	0.00397
MA0060.1	MA0060.1	0.159
MA0061.1	MA0061.1	0.0114
MA0062.2	MA0062.2	0.00289
MA0065.2	MA0065.2	8.37697e-4
MA0066.1	MA0066.1	0.00762
MA0067.1	MA0067.1	0.248
MA0068.1	MA0068.1	3.07624e-4
MA0069.1	MA0069.1	0.803
MA0070.1	MA0070.1	0.476
MA0071.1	MA0071.1	0.087
MA0072.1	MA0072.1	0.302
MA0073.1	MA0073.1	0.461
MA0074.1	MA0074.1	0.569
MA0076.1	MA0076.1	0.115
MA0077.1	MA0077.1	0.918
MA0078.1	MA0078.1	0.163
MA0079.2	MA0079.2	0.435
MA0080.2	MA0080.2	0.0534
MA0081.1	MA0081.1	0.326
MA0083.1	MA0083.1	1.11603e-5
MA0084.1	MA0084.1	0.984
MA0087.1	MA0087.1	0.217
MA0088.1	MA0088.1	0.098
MA0090.1	MA0090.1	0.211
MA0091.1	MA0091.1	0.435
MA0092.1	MA0092.1	0.494
MA0093.1	MA0093.1	0.222
MA0099.2	MA0099.2	3.06285e-9
MA0100.1	MA0100.1	0.227
MA0101.1	MA0101.1	0.0474
MA0102.2	MA0102.2	0.522
MA0103.1	MA0103.1	0.059
MA0104.2	MA0104.2	0.0136
MA0105.1	MA0105.1	5.54399e-7
MA0106.1	MA0106.1	0.0753
MA0107.1	MA0107.1	0.0832
MA0108.2	MA0108.2	1.61126e-11
MA0111.1	MA0111.1	0.5
MA0112.2	MA0112.2	0.00479
MA0113.1	MA0113.1	0.842
MA0114.1	MA0114.1	0.00884
MA0115.1	MA0115.1	0.012
MA0116.1	MA0116.1	2.51763e-4
MA0117.1	MA0117.1	0.404
MA0119.1	MA0119.1	0.213
MA0122.1	MA0122.1	0.297
MA0124.1	MA0124.1	0.357
MA0125.1	MA0125.1	0.241
MA0131.1	MA0131.1	0.782
MA0135.1	MA0135.1	0.24
MA0136.1	MA0136.1	0.0213
MA0137.2	MA0137.2	0.306
MA0138.2	MA0138.2	0.926
MA0139.1	MA0139.1	0.269
MA0140.1	MA0140.1	0.0977
MA0141.1	MA0141.1	0.00771
MA0142.1	MA0142.1	0.085
MA0143.1	MA0143.1	0.93
MA0144.1	MA0144.1	0.925
MA0145.1	MA0145.1	0.844
MA0146.1	MA0146.1	0.172
MA0147.1	MA0147.1	0.00719
MA0148.1	MA0148.1	0.495
MA0149.1	MA0149.1	0.0284
MA0150.1	MA0150.1	2.10536e-4
MA0152.1	MA0152.1	0.243
MA0153.1	MA0153.1	7.50493e-4
MA0154.1	MA0154.1	0.0146
MA0155.1	MA0155.1	0.904
MA0156.1	MA0156.1	0.0694
MA0157.1	MA0157.1	0.359
MA0159.1	MA0159.1	0.0413
MA0160.1	MA0160.1	0.0166
MA0162.1	MA0162.1	0.185
MA0163.1	MA0163.1	2.38296e-9
MA0164.1	MA0164.1	0.216
MA0258.1	MA0258.1	0.0236
MA0259.1	MA0259.1	0.149

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11676

Novel motif	Logo	P-value
1	1	0.0091
10	10	0.0369
100	100	0.101
101	101	0.743
102	102	0.252
103	103	0.0287
104	104	0.483
105	105	0.448
106	106	0.1
107	107	0.72
108	108	0.327
109	109	0.0149
11	11	0.0316
110	110	0.147
111	111	6.51673e-4
112	112	0.472
113	113	0.286
114	114	0.00648
115	115	0.472
116	116	0.399
117	117	0.0149
118	118	0.0764
119	119	0.167
12	12	0.873
120	120	0.0618
121	121	0.718
122	122	0.93
123	123	0.106
124	124	0.849
125	125	0.0894
126	126	0.683
127	127	0.0832
128	128	0.335
129	129	0.516
13	13	0.0784
130	130	0.501
131	131	0.262
132	132	0.221
133	133	0.0275
134	134	0.256
135	135	0.32
136	136	0.376
137	137	0.208
138	138	0.452
139	139	0.211
14	14	0.982
140	140	0.192
141	141	0.596
142	142	0.453
143	143	0.0155
144	144	0.918
145	145	0.397
146	146	0.884
147	147	0.919
148	148	0.00669
149	149	0.635
15	15	0.0434
150	150	0.203
151	151	0.38
152	152	0.324
153	153	0.402
154	154	0.741
155	155	0.159
156	156	0.69
157	157	0.584
158	158	0.785
159	159	0.295
16	16	0.0584
160	160	0.361
161	161	0.398
162	162	0.348
163	163	0.368
164	164	0.0894
165	165	0.704
166	166	0.15
167	167	0.0113
168	168	0.605
169	169	0.0449
17	17	0.245
18	18	0.0258
19	19	0.941
2	2	0.408
20	20	0.245
21	21	0.206
22	22	0.65
23	23	0.976
24	24	0.431
25	25	0.316
26	26	0.00177
27	27	0.708
28	28	0.703
29	29	0.0161
3	3	0.149
30	30	0.116
31	31	0.649
32	32	0.38
33	33	0.138
34	34	0.466
35	35	0.206
36	36	0.00788
37	37	0.083
38	38	0.527
39	39	0.546
4	4	0.521
40	40	0.0318
41	41	0.107
42	42	0.361
43	43	0.135
44	44	0.125
45	45	0.543
46	46	0.0527
47	47	0.0381
48	48	0.133
49	49	0.0702
5	5	0.494
50	50	0.887
51	51	0.522
52	52	0.768
53	53	0.945
54	54	0.751
55	55	0.672
56	56	0.602
57	57	0.154
58	58	0.523
59	59	0.453
6	6	0.742
60	60	0.553
61	61	0.371
62	62	0.269
63	63	0.209
64	64	0.166
65	65	0.457
66	66	0.13
67	67	0.326
68	68	0.963
69	69	0.125
7	7	0.222
70	70	0.0152
71	71	0.0236
72	72	0.371
73	73	0.0564
74	74	0.531
75	75	0.00817
76	76	0.0991
77	77	0.976
78	78	0.075
79	79	0.346
8	8	0.0567
80	80	0.321
81	81	0.175
82	82	0.604
83	83	0.918
84	84	0.631
85	85	0.287
86	86	0.442
87	87	0.00504
88	88	0.961
89	89	0.394
9	9	0.789
90	90	0.0538
91	91	0.872
92	92	0.723
93	93	0.238
94	94	0.0106
95	95	0.00404
96	96	0.281
97	97	0.665
98	98	0.181
99	99	0.814

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11676

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010100 human uterus - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000995 (uterus)
0006834 (uterus or analog)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010100 (human uterus - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0005795,UBERON:0000995,UBERON:0006834,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0006598,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005111
+|accession_numbers=CAGE;DRX008756;DRR009628;DRZ001053;DRZ002438;DRZ012403;DRZ013788
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000995,UBERON:0006834,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010100
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:101000537..101000553,-!p1@PGR!2.20!156.71!PGR;;chr4:174451370..174451387,-!p1@HAND2!2.13!133.24!HAND2;;chr6:152128810..152128827,+!p2@ESR1!1.94!85.94!ESR1;;chr11:32457075..32457095,-!p1@WT1!1.94!85.57!WT1;;chr20:62680984..62680999,-!p1@SOX18!1.92!107.33!SOX18;;chr6:152126830..152126847,+!p4@ESR1!1.91!80.43!ESR1;;chr6:152126790..152126828,+!p3@ESR1!1.88!74.20!ESR1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.82!65.15!PEG3;;chr7:27224795..27224840,-!p2@HOXA11!1.82!64.54!HOXA11;;chr1:40105299..40105326,-!p1@HEYL!1.81!64.30!HEYL;;chr9:16575347..16575359,-!p12@BNC2!1.80!62.10!BNC2;;chr7:27224842..27224872,-!p1@HOXA11!1.80!61.85!HOXA11;;chr2:27371879..27371907,+!p1@TCF23!1.78!59.29!TCF23;;chr11:101000524..101000535,-!p3@PGR!1.75!55.50!PGR;;chr10:119302232..119302265,+!p1@EMX2!1.71!50.49!EMX2;;chr6:134210243..134210257,+!p1@TCF21!1.71!50.49!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.66!45.23!SOX17;;chr21:39870339..39870443,-!p1@ERG!1.64!42.78!ERG;;chr7:27192185..27192209,-!p1@HOXA3!1.63!41.93!HOXA3;;chr11:100999775..100999800,-!p2@PGR!1.62!40.83!PGR;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.46!HIF3A;;chr12:52437488..52437507,+!p2@NR4A1!1.60!39.12!NR4A1;;chr11:32457413..32457431,-!p2@WT1!1.56!35.69!WT1;;chr3:128212033..128212051,-!p1@GATA2!1.56!34.96!GATA2;;chr9:77112244..77112262,+!p1@RORB!1.52!35.69!RORB;;chr2:177001290..177001315,+!p1@HOXD3!1.50!30.32!HOXD3;;chr3:69788576..69788648,+!p1@MITF!1.49!152.80!MITF;;chr8:99956662..99956684,+!p1@OSR2!1.49!45.84!OSR2;;chr15:37390850..37390909,-!p3@MEIS2!1.47!55.25!MEIS2;;chr11:100999802..100999819,-!p4@PGR!1.47!28.36!PGR;;chr12:52445218..52445237,+!p1@NR4A1!1.43!313.92!NR4A1;;chr7:27213893..27213954,-!p1@HOXA10!1.42!25.30!HOXA10;;chr2:176981499..176981522,+!p2@HOXD10!1.41!24.69!HOXD10;;chr7:44143925..44143970,+!p1@AEBP1!1.40!515.98!AEBP1;;chr9:16870659..16870675,-!p2@BNC2!1.40!29.22!BNC2;;chr6:19837592..19837621,+!p1@ID4!1.38!137.03!ID4;;chr10:119302268..119302282,+!p4@EMX2!1.38!22.98!EMX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.37!57.94!ZFPM2;;chr11:113930425..113930471,+!p1@ZBTB16!1.37!32.15!ZBTB16;;chr10:119302508..119302559,+!p5@EMX2!1.37!22.37!EMX2;;chr2:27371919..27371935,+!p2@TCF23!1.37!22.25!TCF23;;chr2:66662281..66662308,+!p1@MEIS1!1.36!74.69!MEIS1;;chr2:166326200..166326216,+!p1@CSRNP3!1.36!31.91!CSRNP3;;chr3:169381420..169381535,-!p1@MECOM!1.36!25.30!MECOM;;chr22:41763452..41763466,+!p2@TEF!1.36!21.88!TEF;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.15!ZNF727;;chr4:174450089..174450153,-!p2@HAND2!1.33!20.29!HAND2;;chr2:176973498..176973524,+!p1@HOXD10!1.32!19.68!HOXD10;;chr6:152128782..152128803,+!p5@ESR1!1.31!19.31!ESR1;;chr11:34642612..34642646,+!p1@EHF!1.31!19.19!EHF;;chrX:66763856..66763896,+!p1@AR!1.30!27.26!AR;;chr1:170633348..170633399,+!p2@PRRX1!1.30!25.67!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!18.83!ZBED1;;chr1:164528911..164528940,+!p7@PBX1!1.29!27.26!PBX1;;chr7:96654133..96654150,-!p1@DLX5!1.29!18.70!DLX5;;chr1:164528942..164528964,+!p11@PBX1!1.28!18.21!PBX1;;chr5:71803177..71803255,-!p1@ZNF366!1.28!17.85!ZNF366;;chr11:101000445..101000465,-!p5@PGR!1.27!17.60!PGR;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.27!17.60!HOXC5;;chr17:53342311..53342400,+!p1@HLF!1.26!19.80!HLF;;chr5:88178983..88179012,-!p1@MEF2C!1.25!127.74!MEF2C;;chr1:164528445..164528459,+!p2@PBX1!1.25!51.46!PBX1;;chr1:170633058..170633084,+!p5@PRRX1!1.25!16.75!PRRX1;;chr1:164528410..164528428,+!p1@PBX1!1.24!119.31!PBX1;;chr9:114287433..114287513,+!p1@ZNF483!1.24!41.68!ZNF483;;chr1:170632959..170632987,+!p4@PRRX1!1.24!17.85!PRRX1;;chr2:27371866..27371878,+!p3@TCF23!1.23!16.01!TCF23;;chr7:44143978..44143989,+!p2@AEBP1!1.22!28.48!AEBP1;;chr5:158526459..158526481,-!p2@EBF1!1.22!20.78!EBF1;;chr15:96869222..96869251,+!p18@NR2F2!1.22!18.21!NR2F2;;chr7:42276787..42276815,-!p1@GLI3!1.21!40.71!GLI3;;chr20:51588873..51588953,+!p1@TSHZ2!1.21!20.29!TSHZ2;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.04!SOX7;;chr10:119302182..119302196,+!p6@EMX2!1.20!14.91!EMX2;;chr15:96873984..96873999,+!p3@NR2F2!1.18!103.05!NR2F2;;chr13:72441315..72441454,-!p1@DACH1!1.18!27.99!DACH1;;chr18:19749541..19749557,+!p1@GATA6!1.17!43.15!GATA6;;chr2:145277882..145277967,-!p3@ZEB2!1.17!23.96!ZEB2;;chr1:164529004..164529015,+!p15@PBX1!1.17!13.94!PBX1;;chr20:30433396..30433414,-!p1@FOXS1!1.17!13.94!FOXS1;;chr3:128206762..128206781,-!p2@GATA2!1.16!83.00!GATA2;;chr3:114819124..114819200,-!p3@ZBTB20!1.16!31.05!ZBTB20;;chr15:96874012..96874042,+!p2@NR2F2!1.15!116.86!NR2F2;;chr18:22932080..22932170,-!p1@ZNF521!1.15!55.25!ZNF521;;chr2:66662249..66662267,+!p2@MEIS1!1.15!50.61!MEIS1;;chr12:96588368..96588394,+!p3@ELK3!1.15!35.57!ELK3;;chr20:2673383..2673441,+!p1@EBF4!1.15!20.78!EBF4;;chr10:114710244..114710257,+!p3@TCF7L2!1.14!34.35!TCF7L2;;chr5:92919100..92919135,+!p3@NR2F1!1.14!15.52!NR2F1;;chr11:128457446..128457461,-!p4@ETS1!1.14!12.71!ETS1;;chr15:96869255..96869291,+!p6@NR2F2!1.13!22.98!NR2F2;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.35!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!1.12!30.56!EBF1;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.67!C11orf9;;chr11:113930401..113930422,+!p3@ZBTB16!1.12!12.10!ZBTB16;;chr2:176969228..176969260,+!p1@HOXD11!1.12!12.10!HOXD11;;chr5:92918919..92918942,+!p1@NR2F1!1.11!52.69!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!1.11!13.45!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.10!31.78!OSR1;;chr1:61548374..61548415,+!p4@NFIA!1.10!21.51!NFIA;;chr7:113726357..113726443,+!p1@FOXP2!1.10!20.17!FOXP2;;chr6:152128325..152128339,+!p10@ESR1!1.10!11.61!ESR1;;chr3:141151009..141151033,+!p10@ZBTB38!1.09!11.25!ZBTB38;;chr12:80085061..80085119,-!p6@PAWR!1.08!17.48!PAWR;;chr11:128457492..128457506,-!p6@ETS1!1.08!11.12!ETS1;;chr1:164528384..164528409,+!p3@PBX1!1.07!33.49!PBX1;;chr15:42749722..42749739,-!p2@ZFP106!1.07!19.31!ZFP106;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.39!HOXD8;;chr1:8585945..8586056,-!p3@RERE!1.04!33.62!RERE;;chr17:7492684..7492778,-!p2@SOX15!1.04!21.39!SOX15;;chr3:141150883..141150961,+!p6@ZBTB38!1.04!9.90!ZBTB38;;chr17:38256799..38256815,-!p3@NR1D1!1.03!17.73!NR1D1;;chr3:42947600..42947680,+!p1@ZNF662!1.03!14.06!ZNF662;;chr7:44143997..44144008,+!p3@AEBP1!1.03!12.59!AEBP1;;chr8:106330696..106330719,+!p2@ZFPM2!1.03!12.59!ZFPM2;;chr7:15726243..15726293,-!p2@MEOX2!1.03!9.66!MEOX2;;chr1:44513995..44514031,+!p1@KLF17!1.03!9.66!KLF17;;chr13:41240717..41240735,-!p2@FOXO1!1.02!65.40!FOXO1;;chr4:4861385..4861398,+!p1@MSX1!1.02!28.85!MSX1;;chr9:16870710..16870763,-!p1@BNC2!1.02!16.62!BNC2;;chr11:113930291..113930339,+!p2@ZBTB16!1.02!15.77!ZBTB16;;chr18:53255839..53255854,-!p13@TCF4!1.02!11.12!TCF4;;chr1:164528975..164528998,+!p13@PBX1!1.02!9.53!PBX1;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.41!HOXA9;;chr10:119303078..119303169,+!p2@EMX2!1.02!9.41!EMX2;;chr19:16435625..16435682,+!p1@KLF2!1.01!302.67!KLF2;;chr4:174451350..174451363,-!p3@HAND2!1.01!9.29!HAND2;;chr2:176987463..176987479,+!p2@HOXD9!1.01!9.17!HOXD9;;chr1:8586084..8586100,-!p20@RERE!1.01!9.17!RERE;;chr17:38256822..38256851,-!p1@NR1D1!1.00!71.63!NR1D1;;chr20:50179368..50179392,-!p2@NFATC2!1.00!11.86!NFATC2;;chr3:138665937..138665968,-!p1@FOXL2!1.00!9.05!FOXL2;;chr16:51185172..51185197,-!p1@SALL1!1.00!9.05!SALL1;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.15!PRRX1;;chr18:53068911..53068935,-!p4@TCF4!0.99!10.02!TCF4;;chr10:119302352..119302362,+!p9@EMX2!0.99!8.80!EMX2;;chr11:100999697..100999708,-!p7@PGR!0.99!8.80!PGR;;chr2:176969097..176969109,+!p3@HOXD11!0.99!8.80!HOXD11;;chr2:66662396..66662407,+!p4@MEIS1!0.99!8.68!MEIS1;;chr13:41240737..41240787,-!p1@FOXO1!0.98!104.27!FOXO1;;chr6:126070769..126070801,+!p1@HEY2!0.98!10.02!HEY2;;chr14:33403881..33403924,+!p1@NPAS3!0.97!8.43!NPAS3;;chr15:96869165..96869183,+!p20@NR2F2!0.97!8.31!NR2F2;;chr17:6926362..6926377,+!p1@BCL6B!0.97!8.31!BCL6B;;chr18:19749386..19749404,+!p2@GATA6!0.96!11.74!GATA6;;chrX:56258844..56258882,+!p1@KLF8!0.96!11.49!KLF8;;chr6:152011654..152011682,+!p1@ESR1!0.96!8.19!ESR1;;chr10:63809106..63809127,+!p1@ARID5B!0.95!111.61!ARID5B;;chr16:79633894..79633954,-!p3@MAF!0.95!15.52!MAF;;chr3:25469724..25469773,+!p1@RARB!0.95!11.61!RARB;;chr12:24715376..24715432,-!p1@SOX5!0.95!10.02!SOX5;;chr16:85932760..85932775,+!p1@IRF8!0.95!7.82!IRF8;;chr18:52989081..52989117,-!p7@TCF4!0.94!12.10!TCF4;;chr1:214161272..214161322,+!p1@PROX1!0.94!11.00!PROX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.94!7.70!RUNX1T1;;chr15:96873921..96873946,+!p1@NR2F2!0.93!219.06!NR2F2;;chr7:28448965..28448994,+!p2@CREB5!0.93!27.26!CREB5;;chr1:164528616..164528660,+!p5@PBX1!0.93!15.89!PBX1;;chr15:96869292..96869320,+!p15@NR2F2!0.93!11.12!NR2F2;;chr2:208031943..208031978,-!p5@KLF7!0.93!10.27!KLF7;;chr1:201979743..201979762,+!p1@ELF3!0.93!7.58!ELF3;;chr11:47400078..47400106,-!p1@SPI1!0.93!7.46!SPI1;;chr1:204042233..204042249,+!p1@SOX13!0.92!48.04!SOX13;;chr15:57210961..57211012,+!p3@TCF12!0.92!24.20!TCF12;;chr1:23696308..23696339,-!p2@ZNF436!0.92!16.14!ZNF436;;chr19:38085768..38085821,+!p1@ZNF540!0.92!11.25!ZNF540;;chr2:176987441..176987454,+!p1@HOXD9!0.92!7.33!HOXD9;;chr15:61521417..61521460,-!p2@RORA!0.91!16.38!RORA;;chr6:34524093..34524135,-!p1@SPDEF!0.91!7.09!SPDEF;;chr7:15726296..15726315,-!p1@MEOX2!0.91!7.09!MEOX2;;chr17:1958388..1958404,+!p1@HIC1!0.90!46.45!HIC1;;chr7:113726226..113726245,+!p3@FOXP2!0.90!6.97!FOXP2;;chr1:200011711..200011752,+!p3@NR5A2!0.90!6.97!NR5A2;;chr19:6110474..6110551,-!p1@RFX2!0.89!42.78!RFX2;;chr17:1959369..1959388,+!p2@HIC1!0.89!18.34!HIC1;;chr1:61548069..61548102,+!p3@NFIA!0.89!16.87!NFIA;;chr18:53089538..53089578,-!p14@TCF4!0.89!6.85!TCF4;;chr5:158526756..158526797,-!p3@EBF1!0.89!6.85!EBF1;;chr8:93107451..93107468,-!p2@RUNX1T1!0.89!6.85!RUNX1T1;;chr12:80085120..80085156,-!p14@PAWR!0.89!6.72!PAWR;;chrX:66763914..66763933,+!p3@AR!0.89!6.72!AR;;chr15:96874927..96874938,+!p8@NR2F2!0.88!14.55!NR2F2;;chr19:22193731..22193751,-!p1@ZNF208!0.88!6.60!ZNF208;;chr11:100999848..100999858,-!p6@PGR!0.88!6.60!PGR;;chr7:27239703..27239715,-!p1@HOXA13!0.88!6.60!HOXA13;;chr15:37392724..37392757,-!p1@MEIS2!0.87!30.93!MEIS2;;chr5:88179017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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000995;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003975;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0005795,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/uterus%252c%2520adult%252c%2520pool1.CNhs11676.10100-102D1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10100-102D1
 |is_a=EFO:0002091;;FF:0010100
 |is_obsolete=
+|library_id=CNhs11676
+|library_id_phase_based=2:CNhs11676
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10100
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10100
 |name=uterus, adult, pool1
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11676,LSID808,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=102
 |rna_catalog_number=Cat: 636643 Lot: 8101369A-20
@@ Line 58: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=SRF:2.955438527;MZF1:2.39157342533;RBPJ:2.38931636381;HBP1_HMGB_SSRP1_UBTF:2.30927907767;TFAP2{A,C}:2.27743775746;SMAD1..7,9:2.1507778576;FOX{D1,D2}:2.13193642362;MAZ:2.1241596711;MYBL2:2.11118375703;NFATC1..3:1.95760268763;SPZ1:1.94373732757;RREB1:1.89374746139;GTF2I:1.88852371367;SP1:1.73645791888;PRDM1:1.69761283982;FOX{I1,J2}:1.67821342208;MED-1{core}:1.63678663089;GCM1,2:1.62796669329;NANOG:1.60872041399;TBP:1.51880755906;IKZF1:1.51634860758;PAX5:1.50420457663;XCPE1{core}:1.49633298759;PATZ1:1.47195144338;TLX1..3_NFIC{dimer}:1.43619752299;ZNF238:1.4306896145;MTE{core}:1.37252266713;EGR1..3:1.36058266174;MYFfamily:1.34637535634;TFAP2B:1.32714005201;MEF2{A,B,C,D}:1.28555825691;TFAP4:1.28126687623;EP300:1.22036309587;HIC1:1.19975230592;FOXO1,3,4:1.19026085769;BPTF:1.18953720095;STAT1,3:1.16928855339;XBP1:1.14556106995;TLX2:1.14421754673;ESR1:1.11989144003;TEAD1:1.06691128113;TFCP2:1.05402281665;NKX2-3_NKX2-5:1.01641658231;AR:0.973289119256;SOX2:0.93891768984;GATA4:0.934803599546;GFI1B:0.932923239541;BREu{core}:0.927292000752;CDC5L:0.87388257232;FOXP1:0.856684633898;TGIF1:0.84913791194;NHLH1,2:0.843650092847;ZNF384:0.824561877148;SOX5:0.804367531003;TBX4,5:0.793889552772;GTF2A1,2:0.776363394642;RFX2..5_RFXANK_RFXAP:0.774501478132;ZIC1..3:0.756672042759;HMX1:0.728639692251;ATF2:0.719443356527;MTF1:0.66527232597;NKX2-1,4:0.662168660679;ZFP161:0.661510893444;FOXN1:0.661291328496;IKZF2:0.641436106462;NR1H4:0.633127827001;KLF4:0.627975048481;IRF7:0.611434827679;POU1F1:0.60780434208;GZF1:0.55077986902;RXRA_VDR{dimer}:0.544754725354;ZNF148:0.538513428498;POU6F1:0.535168965332;ADNP_IRX_SIX_ZHX:0.53369782698;HOX{A6,A7,B6,B7}:0.533368397756;HSF1,2:0.519390448913;SREBF1,2:0.511903262364;FOX{F1,F2,J1}:0.497838362761;AHR_ARNT_ARNT2:0.494346919851;RFX1:0.435812495985;NFIX:0.431944131334;ETS1,2:0.426293995122;ZNF423:0.419346974599;FOXM1:0.403818714093;TEF:0.402767643413;NKX3-2:0.397596305667;GFI1:0.37161688438;PBX1:0.369133112734;GATA6:0.316231171512;EBF1:0.310648713735;HNF1A:0.307472964443;ATF6:0.295317346745;PAX6:0.287112363264;NR3C1:0.277119624586;HAND1,2:0.275937344433;CREB1:0.24251175932;SPIB:0.241761352083;ZNF143:0.241498460374;SOX{8,9,10}:0.223040696584;LEF1_TCF7_TCF7L1,2:0.220333359757;IRF1,2:0.210535995996;GLI1..3:0.20582051073;NRF1:0.191244154163;TAL1_TCF{3,4,12}:0.187762140236;JUN:0.177992245917;REST:0.169934945844;PRRX1,2:0.164870749079;PDX1:0.152407200397;ARID5B:0.148566048763;ALX1:0.14325891207;FOXL1:0.134490624064;PITX1..3:0.132366173013;PAX1,9:0.128240805812;MAFB:0.0753236691376;ZBTB6:0.0625821241172;LHX3,4:0.0620360541832;ESRRA:0.0607891780353;RXR{A,B,G}:0.0606249371792;SNAI1..3:0.0502994715908;SPI1:0.0477566965627;STAT2,4,6:0.023185400492;SOX17:0.00989813128566;ELF1,2,4:0.00112522459613;FOXP3:-0.00499365022211;POU5F1:-0.00715930448762;POU3F1..4:-0.0109864258488;DBP:-0.0290185340253;T:-0.0414983602046;CUX2:-0.0532173125763;RORA:-0.0603000524521;ATF4:-0.0605447321534;NR6A1:-0.0716446325714;FOXA2:-0.122087881004;HNF4A_NR2F1,2:-0.174125499978;LMO2:-0.194007877488;TP53:-0.198948025997;NR5A1,2:-0.208320079661;PAX3,7:-0.214242960417;MYOD1:-0.222459157234;ZEB1:-0.288095288529;HOX{A4,D4}:-0.302591504994;HOX{A5,B5}:-0.321766745021;NFKB1_REL_RELA:-0.36276309715;VSX1,2:-0.365226544182;FOXD3:-0.370629106073;HES1:-0.390771436528;RUNX1..3:-0.398974021486;FOSL2:-0.446617227472;TOPORS:-0.452627308312;FOS_FOS{B,L1}_JUN{B,D}:-0.463928671971;HLF:-0.469191518566;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.483294192831;CEBPA,B_DDIT3:-0.484790533517;FOXQ1:-0.485080549807;NFIL3:-0.49099027155;EN1,2:-0.508695112238;BACH2:-0.545255032486;NFE2:-0.553357525245;ALX4:-0.560139858232;ELK1,4_GABP{A,B1}:-0.561851176644;NFY{A,B,C}:-0.563148864906;NANOG{mouse}:-0.563750691926;CDX1,2,4:-0.573034103907;E2F1..5:-0.577778120346;UFEwm:-0.592777711603;CRX:-0.630029444527;NKX6-1,2:-0.656866269144;POU2F1..3:-0.669208664061;bHLH_family:-0.681954364202;ZBTB16:-0.731818864718;PAX2:-0.764754225748;ATF5_CREB3:-0.782028300646;NKX3-1:-0.784396125106;TFDP1:-0.788126298686;HIF1A:-0.815627296577;YY1:-0.834724691944;NFE2L2:-0.853010289797;NFE2L1:-0.873479194722;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.906988331081;HMGA1,2:-0.930544068188;DMAP1_NCOR{1,2}_SMARC:-0.979372551882;OCT4_SOX2{dimer}:-1.01303577457;ONECUT1,2:-1.05015621684;HOXA9_MEIS1:-1.1786910669;PAX8:-1.21714402988;AIRE:-1.22827880552;MYB:-1.32067407139;PPARG:-1.35760149635;PAX4:-1.41348004361;NKX2-2,8:-1.44665346848;EVI1:-1.50792949132;STAT5{A,B}:-2.30667199266
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10100-102D1;search_select_hide=table117:FF:10100-102D1
 }}

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FF:10100-102D1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:21, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0