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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005131
|accession_numbers=CAGE;DRX007881;DRR008753;DRZ000178;DRZ001563;DRZ011528;DRZ012913
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3350,DOID:6193
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3350,DOID:6193
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:67525443..67525459,-!p2@MYBL1!1.75!81.35!MYBL1;;chr7:19157248..19157268,-!p1@TWIST1!1.74!145.16!TWIST1;;chr10:28034739..28034756,-!p1@MKX!1.64!42.48!MKX;;chr4:81118647..81118666,+!p1@PRDM8!1.54!44.03!PRDM8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!33.02!HOXC5;;chr2:102091144..102091183,-!p2@RFX8!1.45!27.00!RFX8;;chr11:31832658..31832681,-!p1@PAX6!1.42!25.28!PAX6;;chr19:9609272..9609297,-!p1@ZNF560!1.40!23.91!ZNF560;;chr20:62680984..62680999,-!p1@SOX18!1.39!31.30!SOX18;;chr12:54393880..54393962,+!p1@HOXC9!1.37!22.70!HOXC9;;chr14:61116183..61116208,-!p1@SIX1!1.35!78.77!SIX1;;chr19:56879534..56879615,+!p3@ZNF542!1.34!32.16!ZNF542;;chr19:38183138..38183157,-!p2@ZNF781!1.33!20.47!ZNF781;;chr14:64761083..64761101,-!p1@ESR2!1.33!20.47!ESR2;;chr2:239148671..239148686,-!p1@HES6!1.32!70.86!HES6;;chr8:67525473..67525518,-!p1@MYBL1!1.31!44.03!MYBL1;;chr19:48773337..48773339,+!p2@ZNF114!1.30!19.09!ZNF114;;chr3:181429704..181429722,+!p1@SOX2!1.28!17.89!SOX2;;chr1:44513995..44514031,+!p1@KLF17!1.25!16.85!KLF17;;chr15:96874145..96874166,+!p7@NR2F2!1.24!30.96!NR2F2;;chr17:46703687..46703740,-!p1@HOXB9!1.21!15.13!HOXB9;;chr20:50179368..50179392,-!p2@NFATC2!1.20!19.26!NFATC2;;chr6:85473156..85473210,-!p2@TBX18!1.19!17.54!TBX18;;chr3:181429741..181429767,+!p2@SOX2!1.19!14.45!SOX2;;chr19:22193731..22193751,-!p1@ZNF208!1.16!13.41!ZNF208;;chr7:63505799..63505904,+!p1@ZNF727!1.15!13.07!ZNF727;;chrY:21906594..21906622,-!p1@KDM5D!1.15!13.07!KDM5D;;chrY:2803415..2803468,+!p1@ZFY!1.14!12.90!ZFY;;chr7:27205106..27205134,-!p2@HOXA9!1.14!12.73!HOXA9;;chr19:56879625..56879636,+!p5@ZNF542!1.14!12.73!ZNF542;;chr19:56879653..56879743,+!p1@ZNF542!1.13!92.70!ZNF542;;chr17:46688334..46688385,-!p1@HOXB7!1.13!17.89!HOXB7;;chr17:46622205..46622218,-!p3@HOXB2!1.13!14.62!HOXB2;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.38!HOXA9;;chr12:27485762..27485776,+!p3@ARNTL2!1.11!31.99!ARNTL2;;chr15:96874216..96874236,+!p13@NR2F2!1.08!17.03!NR2F2;;chr17:6926362..6926377,+!p1@BCL6B!1.08!11.01!BCL6B;;chr3:147111198..147111225,+!p4@ZIC1!1.08!11.01!ZIC1;;chr15:100106670..100106697,+!p4@MEF2A!1.07!17.71!MEF2A;;chr17:46690839..46690884,-!p1@HOXB8!1.07!10.66!HOXB8;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.07!10.66!ZNF676;;chr11:31832610..31832639,-!p5@PAX6!1.05!10.15!PAX6;;chr15:96874244..96874259,+!p5@NR2F2!1.04!24.25!NR2F2;;chr17:46682321..46682362,-!p1@HOXB6!1.04!9.98!HOXB6;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.98!HOXD8;;chr17:40477163..40477183,-!p7@STAT3!1.03!9.63!STAT3;;chr7:27192185..27192209,-!p1@HOXA3!1.03!9.63!HOXA3;;chr7:19157043..19157088,-!p2@TWIST1!1.02!24.42!TWIST1;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.31!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!1.00!9.12!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!1.00!8.94!HOXA11;;chr17:40477088..40477101,-!p24@STAT3!1.00!8.94!STAT3;;chr17:46622229..46622257,-!p6@HOXB2!0.99!10.32!HOXB2;;chr15:96876966..96877017,+!p12@NR2F2!0.98!12.55!NR2F2;;chr19:38183208..38183225,-!p1@ZNF781!0.98!11.01!ZNF781;;chr3:147111231..147111281,+!p3@ZIC1!0.98!8.60!ZIC1;;chr7:5111723..5111807,+!p2@RBAK!0.98!8.60!RBAK;;chr8:123793708..123793723,+!p6@ZHX2!0.97!8.43!ZHX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.97!8.43!HOXC5;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.96!8.60!GLIS1;;chr19:56879817..56879825,+!p4@ZNF542!0.96!8.08!ZNF542;;chr2:102091566..102091581,-!p1@RFX8!0.96!8.08!RFX8;;chr2:175199697..175199706,+!p2@SP9!0.96!8.08!SP9;;chr15:96874012..96874042,+!p2@NR2F2!0.95!73.61!NR2F2;;chr5:134369905..134369972,-!p1@PITX1!0.95!12.38!PITX1;;chr2:46524897..46524911,+!p2@EPAS1!0.94!22.36!EPAS1;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.15!HMGA2;;chr8:67525524..67525543,-!p3@MYBL1!0.94!13.07!MYBL1;;chr17:46622114..46622138,-!p4@HOXB2!0.93!11.70!HOXB2;;chr2:200322654..200322707,-!p2@SATB2!0.92!10.84!SATB2;;chr7:27224795..27224840,-!p2@HOXA11!0.92!7.22!HOXA11;;chr17:46622070..46622109,-!p1@HOXB2!0.90!16.17!HOXB2;;chr20:39946361..39946379,-!p2@ZHX3!0.89!20.98!ZHX3;;chr11:31832687..31832704,-!p6@PAX6!0.89!6.71!PAX6;;chr16:73093174..73093209,-!p3@ZFHX3!0.88!9.12!ZFHX3;;chr18:53068911..53068935,-!p4@TCF4!0.88!7.57!TCF4;;chr17:46692318..46692362,-!p5@HOXB8!0.88!6.54!HOXB8;;chr14:64761275..64761283,-!p14@ESR2!0.88!6.54!ESR2;;chr2:239756671..239756732,+!p1@TWIST2!0.87!21.67!TWIST2;;chr3:32023232..32023273,+!p1@ZNF860!0.87!9.46!ZNF860;;chr19:22469236..22469266,+!p1@ZNF729!0.87!6.36!ZNF729;;chr19:38183166..38183184,-!p3@ZNF781!0.87!6.36!ZNF781;;chr19:22605136..22605154,-!p1@ZNF98!0.86!6.19!ZNF98;;chr19:2867325..2867348,+!p1@ZNF556!0.86!6.19!ZNF556;;chr7:27196217..27196246,-!p2@HOXA7!0.86!6.19!HOXA7;;chr7:149470540..149470596,-!p2@ZNF467!0.85!8.26!ZNF467;;chr5:137804405..137804444,+!p3@EGR1!0.85!7.40!EGR1;;chr19:9420326..9420349,-!p@chr19:9420326..9420349,-!0.85!6.02!ZNF699;;chr5:88178983..88179012,-!p1@MEF2C!0.84!48.84!MEF2C;;chr5:137804484..137804498,+!p2@EGR1!0.84!24.94!EGR1;;chr1:59249645..59249656,-!p4@JUN!0.84!15.48!JUN;;chr17:46675420.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F1;;chr5:121465268..121465281,+!p2@ZNF474!0.23!0.69!ZNF474;;chr5:134369973..134369984,-!p3@PITX1!0.23!0.69!PITX1;;chr6:1612300..1612324,+!p3@FOXC1!0.23!0.69!FOXC1;;chr6:50789717..50789729,+!p4@TFAP2B!0.23!0.69!TFAP2B;;chr7:27205089..27205096,-!p4@HOXA9!0.23!0.69!HOXA9;;chr8:116681878..116681893,-!p15@TRPS1!0.23!0.69!TRPS1;;chr15:83953373..83953386,-!p2@BNC1!0.23!0.69!BNC1;;chr17:42287802..42287806,-!p25@UBTF!0.23!0.69!UBTF;;chr17:7197881..7197901,-!p3@YBX2!0.23!0.69!YBX2;;chr17:8027418..8027432,-!p1@HES7!0.23!0.69!HES7;;chr18:56532079..56532095,+!p8@ZNF532!0.23!0.69!ZNF532;;chr19:31840278..31840300,-!p5@TSHZ3!0.23!0.69!TSHZ3;;chr19:38270528..38270545,-!p2@ZNF573!0.23!0.69!ZNF573;;chr19:38720356..38720369,-!p4@DPF1!0.23!0.69!DPF1;;chr19:58790361..58790372,+!p2@ZNF8!0.23!0.69!ZNF8;;chr1:8935472..8935488,-!p20@ENO1!0.23!0.69!ENO1;;chr21:39870339..39870443,-!p1@ERG!0.23!0.69!ERG;;chr10:131762589..131762601,-!p3@EBF3!0.23!0.69!EBF3;;chr11:128392258..128392264,-!p7@ETS1!0.23!0.69!ETS1;;chr11:31832207..31832226,-!p12@PAX6!0.23!0.69!PAX6;;chr12:54384370..54384382,+!p5@HOXC6!0.23!0.69!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!0.23!0.69!HOXC4;;chr12:57917037..57917052,+!p9@MBD6!0.23!0.69!MBD6;;chr12:66218469..66218477,+!p16@HMGA2!0.23!0.69!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.23!0.69!HMGA2;;chr13:100634111..100634118,+!p8@ZIC2!0.23!0.69!ZIC2;;chr14:35874077..35874091,-!p8@NFKBIA!0.23!0.69!NFKBIA;;chr2:113994491..113994515,-!p7@PAX8!0.23!0.69!PAX8;;chr2:113999360..113999386,-!p4@PAX8!0.23!0.69!PAX8;;chr2:172967353..172967365,-!p5@DLX2!0.23!0.69!DLX2;;chr2:176987415..176987425,+!p4@HOXD9!0.23!0.69!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.23!0.69!HOXD8;;chr2:177001237..177001252,+!p5@HOXD3!0.23!0.69!HOXD3;;chr2:177001366..177001379,+!p4@HOXD3!0.23!0.69!HOXD3;;chr2:180610775..180610790,-!p15@ZNF385B!0.23!0.69!ZNF385B;;chr2:200213794..200213807,-!p9@SATB2!0.23!0.69!SATB2;;chr3:147111505..147111529,+!p6@ZIC1!0.23!0.69!ZIC1;;chr3:71180051..71180085,-!p21@FOXP1!0.23!0.69!FOXP1;;chr3:71631248..71631268,-!p26@FOXP1!0.23!0.69!FOXP1;;chr4:206376..206387,+!p2@ZNF876P!0.23!0.69!ZNF876P;;chr9:14083091..14083096,-!p12@NFIB!0.23!0.69!NFIB;;chr9:86594363..86594374,-!p@chr9:86594363..86594374,-!0.23!0.69!HNRPK;;chrX:47863414..47863425,-!p3@ZNF182!0.23!0.69!ZNF182;;chr9:16728161..16728185,-!p4@BNC2!0.23!0.69!BNC2;;chr9:14314066..14314075,-!p11@NFIB!0.23!0.69!NFIB;;chr9:99180739..99180752,-!p4@ZNF367!0.23!0.69!ZNF367;;chr2:191878874..191878938,-!p1@STAT1!0.22!80.49!STAT1;;chr21:43430440..43430485,-!p1@ZNF295!0.22!20.47!ZNF295;;chr8:146052918..146052975,+!p1@ZNF7!0.22!15.99!ZNF7;;chr11:615942..615957,-!p1@IRF7!0.22!13.59!IRF7;;chr17:40897043..40897087,-!p1@EZH1!0.22!12.73!EZH1;;chr19:53141584..53141625,-!p2@ZNF83!0.22!11.35!ZNF83;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.22!8.77!SNAPC4;;chr19:12175535..12175554,+!p1@ZNF844!0.22!7.57!ZNF844;;chr3:75834687..75834720,-!p1@ZNF717!0.22!6.88!ZNF717;;chr16:3285144..3285191,-!p1@ZNF200!0.22!6.71!ZNF200;;chr5:88179017..88179046,-!p2@MEF2C!0.22!5.33!MEF2C;;chr2:242576641..242576731,-!p2@THAP4!0.22!4.99!THAP4;;chr19:44331493..44331552,+!p1@ZNF283!0.22!4.64!ZNF283;;chr7:99156145..99156207,+!p5@ZNF655!0.22!4.30!ZNF655;;chr3:71179746..71179783,-!p7@FOXP1!0.22!4.30!FOXP1;;chr6:12008986..12009016,+!p3@HIVEP1!0.22!3.96!HIVEP1;;chr16:89787402..89787430,+!p2@ZNF276!0.22!3.96!ZNF276;;chr18:45457478..45457517,-!p6@SMAD2!0.22!3.61!SMAD2;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.22!2.75!ZNF700;;chr19:52408285..52408310,-!p3@ZNF649!0.22!2.75!ZNF649;;chr2:113033141..113033162,+!p2@ZC3H6!0.22!2.41!ZC3H6;;chr11:8102749..8102769,+!p2@TUB!0.22!2.06!TUB;;chr1:249153114..249153175,-!p3@ZNF692!0.22!2.06!ZNF692;;chr19:20011775..20011800,+!p2@ZNF93!0.22!1.89!ZNF93;;chr8:28243813..28243839,-!p4@ZNF395!0.22!1.89!ZNF395;;
Line 35: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epithelioid%2520sarcoma%2520cell%2520line%253aHS-ES-1.CNhs11247.10443-106F2.hg38.nobarcode.ctss.bed.gz
|id=FF:10443-106F2
|id=FF:10443-106F2
|is_a=DOID:6193;;EFO:0002091;;FF:0000003;;FF:0000210
|is_a=DOID:6193;;EFO:0002091;;FF:0000003;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs11247
|library_id_phase_based=2:CNhs11247
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10443
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10443
|name=epithelioid sarcoma cell line:HS-ES-1
|name=epithelioid sarcoma cell line:HS-ES-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11247,LSID757,release008,COMPLETED
|profile_hcage=CNhs11247,LSID757,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 58: Line 77:
|rna_weight_ug=37.325
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|sample_age=
|sample_category=cell lines
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|sample_cell_catalog=RCB2364
|sample_cell_line=HS-ES-1
|sample_cell_line=HS-ES-1
Line 79: Line 99:
|top_motifs=HBP1_HMGB_SSRP1_UBTF:3.2872623684;PDX1:2.00811885541;CDX1,2,4:1.48587891535;AIRE:1.39976003818;PAX4:1.37354642507;NKX6-1,2:1.34128812378;NKX2-3_NKX2-5:1.33197744756;ZNF148:1.32957027134;POU1F1:1.3276919437;FOXD3:1.133492663;RXR{A,B,G}:1.12267838824;RBPJ:1.04453803248;NFY{A,B,C}:0.970479639428;XCPE1{core}:0.967286151607;HSF1,2:0.944246020282;STAT1,3:0.919760787989;EN1,2:0.884387219211;GFI1:0.867658218383;GFI1B:0.862422405422;EVI1:0.829231246785;TEF:0.824838607509;ONECUT1,2:0.822091690224;ZNF384:0.773898687234;TP53:0.725780010081;ZNF143:0.720273457668;FOX{I1,J2}:0.713264021182;NRF1:0.702448412387;MYB:0.697084668436;LMO2:0.690243843022;POU5F1:0.689589763773;PITX1..3:0.685112224933;E2F1..5:0.656635010874;ZBTB16:0.65615934004;PAX8:0.628894587304;FOXQ1:0.624094619765;HOXA9_MEIS1:0.619573516319;PBX1:0.595979331749;PPARG:0.578039920521;NKX3-1:0.561322941457;HOX{A5,B5}:0.553988585303;OCT4_SOX2{dimer}:0.532881349349;GZF1:0.509687305461;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.500902395433;ZIC1..3:0.489553190151;PRRX1,2:0.485294120372;TEAD1:0.485113497665;bHLH_family:0.48198365126;TAL1_TCF{3,4,12}:0.46702500888;NR6A1:0.451496614146;LHX3,4:0.450833794569;MZF1:0.450476926969;GATA4:0.438001166455;NR3C1:0.437115673149;HMGA1,2:0.424060666572;HOX{A6,A7,B6,B7}:0.418663452315;NFIX:0.412923568901;FOXL1:0.40060005516;GCM1,2:0.39750611034;SREBF1,2:0.394912179799;STAT5{A,B}:0.373082848216;VSX1,2:0.346945067987;CDC5L:0.34554581681;UFEwm:0.306709953598;HOX{A4,D4}:0.300838092338;ALX4:0.273626968154;FOXP1:0.270582021995;CUX2:0.266795655376;TOPORS:0.246916493842;PRDM1:0.231033030098;IKZF2:0.219831570253;SP1:0.178522343832;IRF7:0.178346099155;BACH2:0.139771938244;FOSL2:0.131523093538;KLF4:0.121129399388;HES1:0.0990019886885;ELK1,4_GABP{A,B1}:0.0935854123893;ARID5B:0.0667275482118;POU3F1..4:0.0664315822972;TFDP1:0.0531244412446;PAX3,7:0.0280837127459;SOX{8,9,10}:0.0241472566283;MEF2{A,B,C,D}:0.00320479588323;ZBTB6:-0.000887851895816;RREB1:-0.00504723342436;RFX2..5_RFXANK_RFXAP:-0.0268629132074;MTF1:-0.027100415493;ESR1:-0.0377064222059;FOXM1:-0.0398772004491;IRF1,2:-0.0558486375921;GTF2I:-0.0616117305391;CRX:-0.0710500553672;NFE2:-0.0829917310284;FOXP3:-0.09008295751;RFX1:-0.101991040604;NKX2-2,8:-0.126237191336;HAND1,2:-0.134039773413;FOS_FOS{B,L1}_JUN{B,D}:-0.163552790605;DBP:-0.164197850031;MAZ:-0.175022773003;ZFP161:-0.178587867426;GTF2A1,2:-0.180014925805;NFIL3:-0.188684077184;DMAP1_NCOR{1,2}_SMARC:-0.193321477033;MYBL2:-0.193411063294;NFKB1_REL_RELA:-0.200211626713;HLF:-0.203698343436;CEBPA,B_DDIT3:-0.222945723012;SRF:-0.228999788514;FOX{D1,D2}:-0.268750008076;HNF1A:-0.280183759325;SPIB:-0.301410676756;TFAP2{A,C}:-0.325999183783;PATZ1:-0.32731246142;POU2F1..3:-0.345824744484;TBX4,5:-0.354808680714;STAT2,4,6:-0.360276448756;EGR1..3:-0.362102301582;MED-1{core}:-0.378575528123;TGIF1:-0.378710136158;RORA:-0.380582433497;HNF4A_NR2F1,2:-0.390017247355;SNAI1..3:-0.399017697978;ADNP_IRX_SIX_ZHX:-0.402696111604;TFAP2B:-0.41261819306;AHR_ARNT_ARNT2:-0.423234122907;EP300:-0.423809472283;REST:-0.425275314664;FOXN1:-0.432979636275;RUNX1..3:-0.436520997882;NANOG{mouse}:-0.475356601567;SOX2:-0.480215003148;EBF1:-0.485617144401;ZEB1:-0.49434215903;BPTF:-0.499112576503;FOXA2:-0.499624041522;NKX3-2:-0.502162508513;TLX2:-0.504233764693;NHLH1,2:-0.513347507377;MTE{core}:-0.515967913594;ETS1,2:-0.519093307132;NFE2L2:-0.52592155496;PAX5:-0.530789496984;MYOD1:-0.53129010876;NR1H4:-0.539535636611;ELF1,2,4:-0.548900855249;PAX2:-0.552214758091;FOXO1,3,4:-0.554666393398;NKX2-1,4:-0.559761979417;SPI1:-0.586044402876;CREB1:-0.59357165036;GATA6:-0.594140014488;ZNF238:-0.608837871307;ATF4:-0.611789513021;TLX1..3_NFIC{dimer}:-0.616382439368;YY1:-0.617506318307;HIC1:-0.624919680713;HIF1A:-0.639527719429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.643796860174;ATF5_CREB3:-0.663610192491;XBP1:-0.680809538935;GLI1..3:-0.7052729336;NFATC1..3:-0.708222912339;SOX5:-0.760556952226;MAFB:-0.791847324166;TBP:-0.80421499101;TFCP2:-0.816257770664;ALX1:-0.831821553253;SMAD1..7,9:-0.831975866674;LEF1_TCF7_TCF7L1,2:-0.84511309129;MYFfamily:-0.854636786963;NANOG:-0.87079400366;NFE2L1:-0.877299384056;ATF6:-0.882512269194;AR:-0.883328892571;ATF2:-0.891181025241;BREu{core}:-0.902481136382;SOX17:-0.91699502511;IKZF1:-0.961687297635;NR5A1,2:-0.970483588974;ZNF423:-1.01463823562;JUN:-1.08933493638;RXRA_VDR{dimer}:-1.11121128454;FOX{F1,F2,J1}:-1.15837766714;PAX6:-1.15914190913;PAX1,9:-1.38288670449;ESRRA:-1.54273253681;T:-1.57401783415;POU6F1:-1.62574295292;SPZ1:-1.6604107306;TFAP4:-1.78570121965;HMX1:-1.93147977078
|top_motifs=HBP1_HMGB_SSRP1_UBTF:3.2872623684;PDX1:2.00811885541;CDX1,2,4:1.48587891535;AIRE:1.39976003818;PAX4:1.37354642507;NKX6-1,2:1.34128812378;NKX2-3_NKX2-5:1.33197744756;ZNF148:1.32957027134;POU1F1:1.3276919437;FOXD3:1.133492663;RXR{A,B,G}:1.12267838824;RBPJ:1.04453803248;NFY{A,B,C}:0.970479639428;XCPE1{core}:0.967286151607;HSF1,2:0.944246020282;STAT1,3:0.919760787989;EN1,2:0.884387219211;GFI1:0.867658218383;GFI1B:0.862422405422;EVI1:0.829231246785;TEF:0.824838607509;ONECUT1,2:0.822091690224;ZNF384:0.773898687234;TP53:0.725780010081;ZNF143:0.720273457668;FOX{I1,J2}:0.713264021182;NRF1:0.702448412387;MYB:0.697084668436;LMO2:0.690243843022;POU5F1:0.689589763773;PITX1..3:0.685112224933;E2F1..5:0.656635010874;ZBTB16:0.65615934004;PAX8:0.628894587304;FOXQ1:0.624094619765;HOXA9_MEIS1:0.619573516319;PBX1:0.595979331749;PPARG:0.578039920521;NKX3-1:0.561322941457;HOX{A5,B5}:0.553988585303;OCT4_SOX2{dimer}:0.532881349349;GZF1:0.509687305461;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.500902395433;ZIC1..3:0.489553190151;PRRX1,2:0.485294120372;TEAD1:0.485113497665;bHLH_family:0.48198365126;TAL1_TCF{3,4,12}:0.46702500888;NR6A1:0.451496614146;LHX3,4:0.450833794569;MZF1:0.450476926969;GATA4:0.438001166455;NR3C1:0.437115673149;HMGA1,2:0.424060666572;HOX{A6,A7,B6,B7}:0.418663452315;NFIX:0.412923568901;FOXL1:0.40060005516;GCM1,2:0.39750611034;SREBF1,2:0.394912179799;STAT5{A,B}:0.373082848216;VSX1,2:0.346945067987;CDC5L:0.34554581681;UFEwm:0.306709953598;HOX{A4,D4}:0.300838092338;ALX4:0.273626968154;FOXP1:0.270582021995;CUX2:0.266795655376;TOPORS:0.246916493842;PRDM1:0.231033030098;IKZF2:0.219831570253;SP1:0.178522343832;IRF7:0.178346099155;BACH2:0.139771938244;FOSL2:0.131523093538;KLF4:0.121129399388;HES1:0.0990019886885;ELK1,4_GABP{A,B1}:0.0935854123893;ARID5B:0.0667275482118;POU3F1..4:0.0664315822972;TFDP1:0.0531244412446;PAX3,7:0.0280837127459;SOX{8,9,10}:0.0241472566283;MEF2{A,B,C,D}:0.00320479588323;ZBTB6:-0.000887851895816;RREB1:-0.00504723342436;RFX2..5_RFXANK_RFXAP:-0.0268629132074;MTF1:-0.027100415493;ESR1:-0.0377064222059;FOXM1:-0.0398772004491;IRF1,2:-0.0558486375921;GTF2I:-0.0616117305391;CRX:-0.0710500553672;NFE2:-0.0829917310284;FOXP3:-0.09008295751;RFX1:-0.101991040604;NKX2-2,8:-0.126237191336;HAND1,2:-0.134039773413;FOS_FOS{B,L1}_JUN{B,D}:-0.163552790605;DBP:-0.164197850031;MAZ:-0.175022773003;ZFP161:-0.178587867426;GTF2A1,2:-0.180014925805;NFIL3:-0.188684077184;DMAP1_NCOR{1,2}_SMARC:-0.193321477033;MYBL2:-0.193411063294;NFKB1_REL_RELA:-0.200211626713;HLF:-0.203698343436;CEBPA,B_DDIT3:-0.222945723012;SRF:-0.228999788514;FOX{D1,D2}:-0.268750008076;HNF1A:-0.280183759325;SPIB:-0.301410676756;TFAP2{A,C}:-0.325999183783;PATZ1:-0.32731246142;POU2F1..3:-0.345824744484;TBX4,5:-0.354808680714;STAT2,4,6:-0.360276448756;EGR1..3:-0.362102301582;MED-1{core}:-0.378575528123;TGIF1:-0.378710136158;RORA:-0.380582433497;HNF4A_NR2F1,2:-0.390017247355;SNAI1..3:-0.399017697978;ADNP_IRX_SIX_ZHX:-0.402696111604;TFAP2B:-0.41261819306;AHR_ARNT_ARNT2:-0.423234122907;EP300:-0.423809472283;REST:-0.425275314664;FOXN1:-0.432979636275;RUNX1..3:-0.436520997882;NANOG{mouse}:-0.475356601567;SOX2:-0.480215003148;EBF1:-0.485617144401;ZEB1:-0.49434215903;BPTF:-0.499112576503;FOXA2:-0.499624041522;NKX3-2:-0.502162508513;TLX2:-0.504233764693;NHLH1,2:-0.513347507377;MTE{core}:-0.515967913594;ETS1,2:-0.519093307132;NFE2L2:-0.52592155496;PAX5:-0.530789496984;MYOD1:-0.53129010876;NR1H4:-0.539535636611;ELF1,2,4:-0.548900855249;PAX2:-0.552214758091;FOXO1,3,4:-0.554666393398;NKX2-1,4:-0.559761979417;SPI1:-0.586044402876;CREB1:-0.59357165036;GATA6:-0.594140014488;ZNF238:-0.608837871307;ATF4:-0.611789513021;TLX1..3_NFIC{dimer}:-0.616382439368;YY1:-0.617506318307;HIC1:-0.624919680713;HIF1A:-0.639527719429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.643796860174;ATF5_CREB3:-0.663610192491;XBP1:-0.680809538935;GLI1..3:-0.7052729336;NFATC1..3:-0.708222912339;SOX5:-0.760556952226;MAFB:-0.791847324166;TBP:-0.80421499101;TFCP2:-0.816257770664;ALX1:-0.831821553253;SMAD1..7,9:-0.831975866674;LEF1_TCF7_TCF7L1,2:-0.84511309129;MYFfamily:-0.854636786963;NANOG:-0.87079400366;NFE2L1:-0.877299384056;ATF6:-0.882512269194;AR:-0.883328892571;ATF2:-0.891181025241;BREu{core}:-0.902481136382;SOX17:-0.91699502511;IKZF1:-0.961687297635;NR5A1,2:-0.970483588974;ZNF423:-1.01463823562;JUN:-1.08933493638;RXRA_VDR{dimer}:-1.11121128454;FOX{F1,F2,J1}:-1.15837766714;PAX6:-1.15914190913;PAX1,9:-1.38288670449;ESRRA:-1.54273253681;T:-1.57401783415;POU6F1:-1.62574295292;SPZ1:-1.6604107306;TFAP4:-1.78570121965;HMX1:-1.93147977078
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10443-106F2;search_select_hide=table117:FF:10443-106F2
}}
}}

Latest revision as of 14:02, 3 June 2020

Name:epithelioid sarcoma cell line:HS-ES-1
Species:Human (Homo sapiens)
Library ID:CNhs11247
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexunknown
ageNA
cell typeunclassifiable
cell lineHS-ES-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005131
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11247 CAGE DRX007881 DRR008753
Accession ID Hg19

Library idBAMCTSS
CNhs11247 DRZ000178 DRZ001563
Accession ID Hg38

Library idBAMCTSS
CNhs11247 DRZ011528 DRZ012913
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.345
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial1.073
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00181
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0638
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.181
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.109
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0816
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.227
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.091
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0117
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.284
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0246
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.127
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.308
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0689
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11247

Jaspar motifP-value
MA0002.20.0105
MA0003.10.34
MA0004.10.925
MA0006.10.316
MA0007.10.965
MA0009.10.288
MA0014.10.106
MA0017.10.0555
MA0018.21.03352e-4
MA0019.10.57
MA0024.19.83176e-5
MA0025.10.247
MA0027.10.798
MA0028.10.00478
MA0029.10.606
MA0030.10.0121
MA0031.10.589
MA0035.20.268
MA0038.10.02
MA0039.20.00148
MA0040.10.651
MA0041.10.196
MA0042.10.19
MA0043.10.00177
MA0046.10.14
MA0047.20.0819
MA0048.10.0034
MA0050.10.778
MA0051.10.947
MA0052.10.741
MA0055.11.0022e-5
MA0057.10.919
MA0058.10.741
MA0059.10.91
MA0060.13.25124e-24
MA0061.10.161
MA0062.20.318
MA0065.20.802
MA0066.10.701
MA0067.10.528
MA0068.10.339
MA0069.10.785
MA0070.10.0538
MA0071.10.357
MA0072.10.836
MA0073.10.707
MA0074.10.581
MA0076.10.0841
MA0077.10.533
MA0078.10.144
MA0079.20.878
MA0080.21.5785e-10
MA0081.10.0572
MA0083.10.867
MA0084.10.651
MA0087.10.0778
MA0088.10.00426
MA0090.10.274
MA0091.10.356
MA0092.10.734
MA0093.10.879
MA0099.20.919
MA0100.10.0497
MA0101.10.569
MA0102.20.00174
MA0103.10.484
MA0104.20.937
MA0105.10.934
MA0106.10.00808
MA0107.10.144
MA0108.20.0385
MA0111.10.323
MA0112.20.353
MA0113.10.373
MA0114.10.504
MA0115.10.64
MA0116.10.923
MA0117.10.536
MA0119.10.918
MA0122.10.539
MA0124.10.85
MA0125.10.889
MA0131.10.1
MA0135.10.0262
MA0136.13.55967e-9
MA0137.20.182
MA0138.20.0654
MA0139.10.0397
MA0140.10.0291
MA0141.10.016
MA0142.10.322
MA0143.10.207
MA0144.10.612
MA0145.10.804
MA0146.10.141
MA0147.10.756
MA0148.10.056
MA0149.10.499
MA0150.10.171
MA0152.10.467
MA0153.10.331
MA0154.10.13
MA0155.10.541
MA0156.18.48815e-4
MA0157.10.696
MA0159.10.538
MA0160.10.00324
MA0162.10.751
MA0163.10.606
MA0164.10.886
MA0258.10.561
MA0259.10.529



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11247

Novel motifP-value
10.192
100.0761
1000.116
1010.728
1020.655
1030.674
1040.757
1050.499
1060.00374
1070.0213
1080.413
1090.251
110.81
1100.037
1110.784
1120.00587
1130.103
1140.668
1150.593
1160.851
1170.0255
1180.543
1190.43
120.286
1200.471
1210.444
1220.795
1230.42
1240.04
1250.663
1260.663
1270.932
1280.0979
1290.891
130.0288
1300.0387
1310.956
1320.46
1330.0301
1340.577
1350.326
1360.146
1370.941
1380.03
1390.288
140.22
1400.125
1410.746
1420.21
1430.454
1440.366
1450.485
1460.183
1470.805
1480.855
1490.0988
150.909
1500.256
1510.413
1520.725
1530.514
1540.85
1550.799
1560.34
1570.391
1580.217
1590.324
160.447
1600.779
1610.422
1620.263
1630.706
1640.0236
1650.949
1660.332
1670.539
1680.217
1690.32
170.939
180.303
190.865
20.145
200.025
210.638
220.69
230.695
240.452
250.397
260.923
270.178
280.792
290.214
30.529
300.942
310.0825
320.319
330.168
340.166
350.0525
360.699
370.21
380.943
390.546
40.0108
400.939
410.177
420.506
430.951
440.75
450.792
460.824
470.9
480.719
490.233
50.708
500.756
510.721
520.105
530.74
540.501
550.256
560.392
570.925
580.1
590.149
60.841
600.0419
610.732
620.355
630.564
640.622
650.411
664.97679e-12
670.394
680.644
690.337
70.663
700.677
710.711
720.704
730.611
740.797
750.029
760.11
770.963
780.3
790.226
80.365
800.41
810.791
820.705
830.428
840.891
850.407
860.45
870.882
880.524
890.379
90.246
900.0832
910.242
920.424
930.898
940.549
950.00987
960.507
970.806
980.507
990.234



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11247


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3350 (mesenchymal cell neoplasm)
6193 (epithelioid sarcoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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