FF:10719-109I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005717 | |||
|accession_numbers=CAGE;DRX007843;DRR008715;DRZ000140;DRZ001525;DRZ011490;DRZ012875 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101533,FF:0100729 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.41!256.90!PEG3;;chrX:30327504..30327509,-!p1@NR0B1!2.29!193.63!NR0B1;;chr2:182545234..182545252,-!p1@NEUROD1!2.13!133.26!NEUROD1;;chr9:77112244..77112262,+!p1@RORB!1.95!98.85!RORB;;chr3:189349162..189349207,+!p2@TP63!1.92!81.65!TP63;;chr15:57511609..57511651,+!p2@TCF12!1.84!112.27!TCF12;;chr7:31380292..31380351,-!p1@NEUROD6!1.84!68.24!NEUROD6;;chr3:181429704..181429722,+!p1@SOX2!1.76!56.86!SOX2;;chr20:20348740..20348757,+!p1@INSM1!1.70!48.99!INSM1;;chr17:37764128..37764258,-!p1@NEUROD2!1.67!45.78!NEUROD2;;chr8:40755333..40755352,-!p1@ZMAT4!1.63!41.70!ZMAT4;;chr17:48072574..48072597,-!p1@DLX3!1.55!34.70!DLX3;;chr2:239148671..239148686,-!p1@HES6!1.53!116.93!HES6;;chr17:53342311..53342400,+!p1@HLF!1.50!35.28!HLF;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.33!SOX2;;chr7:96654133..96654150,-!p1@DLX5!1.49!29.74!DLX5;;chr20:42543441..42543497,+!p1@TOX2!1.36!96.52!TOX2;;chr5:158526917..158526932,-!p1@EBF1!1.36!53.07!EBF1;;chr6:99282438..99282457,+!p2@POU3F2!1.35!21.58!POU3F2;;chr1:41827095..41827155,+!p1@FOXO6!1.30!25.37!FOXO6;;chr8:128747757..128747800,+!p7@MYC!1.29!24.79!MYC;;chr7:149470641..149470694,-!p1@ZNF467!1.28!79.61!ZNF467;;chr13:79177674..79177701,-!p1@POU4F1!1.27!17.50!POU4F1;;chr17:46806035..46806059,-!p2@HOXB13!1.26!17.20!HOXB13;;chr20:42543506..42543549,+!p2@TOX2!1.22!37.62!TOX2;;chr17:38256799..38256815,-!p3@NR1D1!1.20!26.54!NR1D1;;chr4:174451370..174451387,-!p1@HAND2!1.18!14.29!HAND2;;chr5:176738887..176738934,-!p1@MXD3!1.17!90.98!MXD3;;chr17:46622440..46622477,-!p5@HOXB2!1.17!15.46!HOXB2;;chr6:99282475..99282501,+!p1@POU3F2!1.16!13.41!POU3F2;;chr19:49140609..49140643,-!p1@DBP!1.14!71.73!DBP;;chr7:35293685..35293718,-!p1@TBX20!1.14!12.83!TBX20;;chr2:176994408..176994492,+!p1@HOXD8!1.14!12.83!HOXD8;;chr3:114819101..114819121,-!p7@ZBTB20!1.14!12.83!ZBTB20;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.70!TWIST1;;chr7:121944796..121944814,-!p1@FEZF1!1.13!12.54!FEZF1;;chr17:46806067..46806097,-!p1@HOXB13!1.11!11.96!HOXB13;;chr8:128750654..128750793,+!p3@MYC!1.10!46.95!MYC;;chr6:135502501..135502546,+!p1@MYB!1.10!14.00!MYB;;chr14:99738138..99738163,-!p1@BCL11B!1.08!11.08!BCL11B;;chr8:128752771..128752843,+!p9@MYC!1.07!15.75!MYC;;chrX:84499081..84499115,+!p2@ZNF711!1.05!15.16!ZNF711;;chr20:21378152..21378169,-!p1@NKX2-4!1.05!10.21!NKX2-4;;chr12:54348655..54348693,+!p1@HOXC12!1.05!10.21!HOXC12;;chr1:23857698..23857733,-!p1@E2F2!1.04!18.66!E2F2;;chr12:54785074..54785122,-!p2@ZNF385A!1.04!15.46!ZNF385A;;chr8:128747661..128747703,+!p6@MYC!1.04!13.71!MYC;;chr7:96634850..96634874,+!p3@DLX6!1.04!9.91!DLX6;;chr2:177001290..177001315,+!p1@HOXD3!1.04!9.91!HOXD3;;chr7:96635178..96635181,+!p1@DLX6!1.03!9.62!DLX6;;chr3:128206762..128206781,-!p2@GATA2!1.02!59.78!GATA2;;chr9:14314131..14314147,-!p2@NFIB!1.02!54.24!NFIB;;chr20:32274179..32274213,-!p1@E2F1!1.00!60.36!E2F1;;chr19:49140572..49140594,-!p2@DBP!1.00!14.58!DBP;;chr20:21494654..21494678,-!p2@NKX2-2!1.00!9.04!NKX2-2;;chr8:128747729..128747748,+!p14@MYC!1.00!9.04!MYC;;chr12:54779511..54779577,-!p5@ZNF385A!1.00!9.04!ZNF385A;;chr14:76842457..76842494,+!p1@ESRRB!1.00!9.04!ESRRB;;chr9:114287433..114287513,+!p1@ZNF483!0.99!23.33!ZNF483;;chr8:128750983..128751021,+!p11@MYC!0.99!12.54!MYC;;chr5:150284532..150284549,-!p1@ZNF300!0.98!18.08!ZNF300;;chr1:38512457..38512474,-!p1@POU3F1!0.98!9.33!POU3F1;;chr1:197886461..197886558,+!p1@LHX9!0.98!8.46!LHX9;;chr7:96654026..96654061,-!p2@DLX5!0.98!8.46!DLX5;;chr9:132427883..132427951,+!p2@PRRX2!0.98!8.46!PRRX2;;chr17:38256822..38256851,-!p1@NR1D1!0.97!66.78!NR1D1;;chr8:128750493..128750522,+!p10@MYC!0.97!12.25!MYC;;chr9:77112225..77112238,+!p2@RORB!0.96!8.16!RORB;;chr17:48046543..48046575,+!p2@DLX4!0.96!8.16!DLX4;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.96!8.16!HOXC5;;chr13:79177703..79177729,-!p2@POU4F1!0.96!8.16!POU4F1;;chr9:14314106..14314119,-!p5@NFIB!0.95!14.58!NFIB;;chr6:99282592..99282616,+!p3@POU3F2!0.95!7.87!POU3F2;;chr3:147127142..147127168,+!p1@ZIC1!0.95!7.87!ZIC1;;chr11:16629369..16629392,-!p5@SOX6!0.95!7.87!SOX6;;chr14:99737850..99737852,-!p3@BCL11B!0.95!7.87!BCL11B;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.94!30.04!HNRPK;;chr7:148581327..148581347,-!p2@EZH2!0.94!27.41!EZH2;;chr19:49140595..49140607,-!p3@DBP!0.94!11.08!DBP;;chr7:113726357..113726443,+!p1@FOXP2!0.93!13.12!FOXP2;;chr17:48046642..48046667,+!p3@DLX4!0.93!7.58!DLX4;;chr7:148581360..148581425,-!p1@EZH2!0.92!37.91!EZH2;;chr14:99738059..99738086,-!p2@BCL11B!0.92!7.29!BCL11B;;chr15:57511589..57511608,+!p4@TCF12!0.92!7.29!TCF12;;chr3:114819073..114819100,-!p10@ZBTB20!0.92!7.29!ZBTB20;;chr6:135502408..135502459,+!p2@MYB!0.91!8.46!MYB;;chr6:21597765..21597779,+!p2@SOX4!0.90!58.90!SOX4;;chr1:40367530..40367597,-!p1@MYCL1!0.90!12.83!MYCL1;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.21!HOXB7;;chr8:128752734..128752763,+!p13@MYC!0.90!8.46!MYC;;chr2:182545296..182545307,-!p3@NEUROD1!0.90!7.00!NEUROD1;;chr14:21994337..21994442,-!p1@SALL2!0.89!19.54!SALL2;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.66!TFAP2A;;chr9:14082760..14082775,-!p6@NFIB!0.89!11.37!NFIB;;chr8:128752850..128752874,+!p12@MYC!0.89!8.16!MYC;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.71!PAX9;;chr8:128750555..128750609,+!p5@MYC!0.88!13.71!MYC;;chrX:84498989..84499003,+!p1@ZNF711!0.86!8.75!ZNF711;;chr3:141105705..141105770,+!p4@ZBTB38!0.85!7.58!ZBTB38;;chr12:54785054..54785072,-!p4@ZNF385A!0.85!7.00!ZNF385A;;chr13:37494275..37494304,-!p2@SMAD9!0.85!6.12!SMAD9;;chr2:182545282..182545294,-!p2@NEUROD1!0.85!6.12!NEUROD1;;chr6:99283040..99283063,+!p5@POU3F2!0.85!6.12!POU3F2;;chr19:45971246..45971265,+!p1@FOSB!0.84!116.93!FOSB;;chr19:12203100..12203132,+!p1@ZNF788!0.84!12.54!ZNF788;;chr8:128748470..128748487,+!p1@MYC!0.83!674.19!MYC;;chr3:18486354..18486377,-!p2@SATB1!0.83!7.29!SATB1;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.83!SOX11;;chr2:73520667..73520683,-!p1@EGR4!0.83!5.83!EGR4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.83!RUNX1T1;;chr19:57352109..57352153,-!p2@ZIM2!0.83!5.83!ZIM2;;chr1:91182854..91182860,-!p1@BARHL2!0.83!5.83!BARHL2;;chr20:21494684..21494708,-!p1@NKX2-2!0.83!5.83!NKX2-2;;chr10:119302232..119302265,+!p1@EMX2!0.83!5.83!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.83!HOXC5;;chr1:18957605..18957623,+!p3@PAX7!0.82!5.54!PAX7;;chr7:73038839..73038862,-!p1@MLXIPL!0.82!5.54!MLXIPL;;chr3:40547564..40547616,+!p1@ZNF620!0.81!7.87!ZNF620;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.29!PRRX2;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.42!HOXB2;;chr14:21994449..21994524,-!p2@SALL2!0.80!16.91!SALL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.80!6.12!TFAP2A;;chr17:46806419..46806438,-!p4@HOXB13!0.80!5.25!HOXB13;;chr1:8938709..8938720,-!p3@ENO1!0.79!274.69!ENO1;;chr16:29819446..29819471,+!p9@MAZ!0.79!16.62!MAZ;;chr9:14083467..14083483,-!p4@NFIB!0.79!13.71!NFIB;;chr1:61548069..61548102,+!p3@NFIA!0.79!13.41!NFIA;;chr1:43148625..43148710,+!p3@YBX1!0.79!9.62!YBX1;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.46!TONSL;;chr3:114819124..114819200,-!p3@ZBTB20!0.78!12.54!ZBTB20;;chr18:6414884..6414942,-!p1@L3MBTL4!0.78!6.42!L3MBTL4;;chr17:42295777..42295816,-!p7@UBTF!0.78!6.12!UBTF;;chr5:50679228..50679288,+!p1@ISL1!0.78!4.96!ISL1;;chr19:50432453..50432468,+!p1@ATF5!0.77!299.77!ATF5;;chr20:32274150..32274166,-!p2@E2F1!0.77!9.62!E2F1;;chr7:149470540..149470596,-!p2@ZNF467!0.77!6.71!ZNF467;;chr3:141747459..141747475,-!p1@TFDP2!0.75!42.57!TFDP2;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.75!NFIX;;chr17:46622229..46622257,-!p6@HOXB2!0.75!5.54!HOXB2;;chr17:46806016..46806029,-!p5@HOXB13!0.75!4.67!HOXB13;;chr19:47538560..47538591,+!p2@NPAS1!0.75!4.67!NPAS1;;chr2:66662281..66662308,+!p1@MEIS1!0.74!16.91!MEIS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.74!12.83!ZFPM2;;chr16:29819403..29819442,+!p5@MAZ!0.73!40.24!MAZ;;chr1:8763463..8763499,-!p6@RERE!0.73!13.12!RERE;;chr9:99180617..99180658,-!p1@ZNF367!0.73!10.21!ZNF367;;chr1:164528616..164528660,+!p5@PBX1!0.73!9.62!PBX1;;chr11:8102819..8102845,+!p3@TUB!0.73!5.54!TUB;;chr1:18958008..18958023,+!p2@PAX7!0.73!4.37!PAX7;;chr5:158526756..158526797,-!p3@EBF1!0.73!4.37!EBF1;;chr11:8102846..8102892,+!p1@TUB!0.72!6.12!TUB;;chr6:20402102..20402152,+!p1@E2F3!0.71!18.66!E2F3;;chr15:61521417..61521460,-!p2@RORA!0.71!9.91!RORA;;chr11:8102749..8102769,+!p2@TUB!0.71!8.46!TUB;;chr3:169381420..169381535,-!p1@MECOM!0.71!4.96!MECOM;;chr22:41763452..41763466,+!p2@TEF!0.71!4.08!TEF;;chr2:172949484..172949522,+!p1@DLX1!0.71!4.08!DLX1;;chr3:189348969..189349018,+!p4@TP63!0.71!4.08!TP63;;chr17:48046671..48046697,+!p4@DLX4!0.71!4.08!DLX4;;chr20:62795799..62795819,+!p1@MYT1!0.71!4.08!MYT1;;chr9:14083091..14083096,-!p12@NFIB!0.71!4.08!NFIB;;chr9:129376201..129376225,+!p1@LMX1B!0.71!4.08!LMX1B;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.08!HOXA7;;chr8:93074848..93074871,-!p3@RUNX1T1!0.71!4.08!RUNX1T1;;chr6:31126291..31126399,+!p1@TCF19!0.70!43.45!TCF19;;chr5:137804484..137804498,+!p2@EGR1!0.70!17.79!EGR1;;chr14:73360799..73360817,-!p1@DPF3!0.70!15.46!DPF3;;chr19:49139477..49139552,-!p4@DBP!0.70!5.25!DBP;;chr16:29817841..29817865,+!p1@MAZ!0.68!93.31!MAZ;;chr16:4322832..4322907,-!p1@TFAP4!0.68!32.95!TFAP4;;chr5:138609782..138609826,+!p5@MATR3!0.68!28.29!MATR3;;chr17:42295897..42295953,-!p10@UBTF!0.68!5.25!UBTF;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!4.96!ZFPM2;;chr5:158527104..158527135,-!p4@EBF1!0.68!3.79!EBF1;;chr6:100061724..100061753,+!p1@PRDM13!0.68!3.79!PRDM13;;chr6:99282570..99282591,+!p4@POU3F2!0.68!3.79!POU3F2;;chr1:18957627..18957640,+!p4@PAX7!0.68!3.79!PAX7;;chr2:176987441..176987454,+!p1@HOXD9!0.68!3.79!HOXD9;;chr20:39317868..39317884,-!p1@MAFB!0.67!51.03!MAFB;;chr4:38665883..38665922,+!p3@KLF3!0.67!15.75!KLF3;;chr5:138647473..138647476,+!p6@MATR3!0.67!10.21!MATR3;;chr19:31840130..31840160,-!p2@TSHZ3!0.67!6.12!TSHZ3;;chr19:11750566..11750627,+!p1@ZNF833P!0.67!5.25!ZNF833P;;chr1:23857325..23857416,-!p2@E2F2!0.67!4.37!E2F2;;chr6:15246200..15246214,+!p2@JARID2!0.66!11.08!JARID2;;chr1:33004734..33004807,+!p2@ZBTB8A!0.66!7.29!ZBTB8A;;chr2:145277640..145277771,-!p1@ZEB2!0.65!54.82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| |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.41!256.90!PEG3;;chrX:30327504..30327509,-!p1@NR0B1!2.29!193.63!NR0B1;;chr2:182545234..182545252,-!p1@NEUROD1!2.13!133.26!NEUROD1;;chr9:77112244..77112262,+!p1@RORB!1.95!98.85!RORB;;chr3:189349162..189349207,+!p2@TP63!1.92!81.65!TP63;;chr15:57511609..57511651,+!p2@TCF12!1.84!112.27!TCF12;;chr7:31380292..31380351,-!p1@NEUROD6!1.84!68.24!NEUROD6;;chr3:181429704..181429722,+!p1@SOX2!1.76!56.86!SOX2;;chr20:20348740..20348757,+!p1@INSM1!1.70!48.99!INSM1;;chr17:37764128..37764258,-!p1@NEUROD2!1.67!45.78!NEUROD2;;chr8:40755333..40755352,-!p1@ZMAT4!1.63!41.70!ZMAT4;;chr17:48072574..48072597,-!p1@DLX3!1.55!34.70!DLX3;;chr2:239148671..239148686,-!p1@HES6!1.53!116.93!HES6;;chr17:53342311..53342400,+!p1@HLF!1.50!35.28!HLF;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.33!SOX2;;chr7:96654133..96654150,-!p1@DLX5!1.49!29.74!DLX5;;chr20:42543441..42543497,+!p1@TOX2!1.36!96.52!TOX2;;chr5:158526917..158526932,-!p1@EBF1!1.36!53.07!EBF1;;chr6:99282438..99282457,+!p2@POU3F2!1.35!21.58!POU3F2;;chr1:41827095..41827155,+!p1@FOXO6!1.30!25.37!FOXO6;;chr8:128747757..128747800,+!p7@MYC!1.29!24.79!MYC;;chr7:149470641..149470694,-!p1@ZNF467!1.28!79.61!ZNF467;;chr13:79177674..79177701,-!p1@POU4F1!1.27!17.50!POU4F1;;chr17:46806035..46806059,-!p2@HOXB13!1.26!17.20!HOXB13;;chr20:42543506..42543549,+!p2@TOX2!1.22!37.62!TOX2;;chr17:38256799..38256815,-!p3@NR1D1!1.20!26.54!NR1D1;;chr4:174451370..174451387,-!p1@HAND2!1.18!14.29!HAND2;;chr5:176738887..176738934,-!p1@MXD3!1.17!90.98!MXD3;;chr17:46622440..46622477,-!p5@HOXB2!1.17!15.46!HOXB2;;chr6:99282475..99282501,+!p1@POU3F2!1.16!13.41!POU3F2;;chr19:49140609..49140643,-!p1@DBP!1.14!71.73!DBP;;chr7:35293685..35293718,-!p1@TBX20!1.14!12.83!TBX20;;chr2:176994408..176994492,+!p1@HOXD8!1.14!12.83!HOXD8;;chr3:114819101..114819121,-!p7@ZBTB20!1.14!12.83!ZBTB20;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.70!TWIST1;;chr7:121944796..121944814,-!p1@FEZF1!1.13!12.54!FEZF1;;chr17:46806067..46806097,-!p1@HOXB13!1.11!11.96!HOXB13;;chr8:128750654..128750793,+!p3@MYC!1.10!46.95!MYC;;chr6:135502501..135502546,+!p1@MYB!1.10!14.00!MYB;;chr14:99738138..99738163,-!p1@BCL11B!1.08!11.08!BCL11B;;chr8:128752771..128752843,+!p9@MYC!1.07!15.75!MYC;;chrX:84499081..84499115,+!p2@ZNF711!1.05!15.16!ZNF711;;chr20:21378152..21378169,-!p1@NKX2-4!1.05!10.21!NKX2-4;;chr12:54348655..54348693,+!p1@HOXC12!1.05!10.21!HOXC12;;chr1:23857698..23857733,-!p1@E2F2!1.04!18.66!E2F2;;chr12:54785074..54785122,-!p2@ZNF385A!1.04!15.46!ZNF385A;;chr8:128747661..128747703,+!p6@MYC!1.04!13.71!MYC;;chr7:96634850..96634874,+!p3@DLX6!1.04!9.91!DLX6;;chr2:177001290..177001315,+!p1@HOXD3!1.04!9.91!HOXD3;;chr7:96635178..96635181,+!p1@DLX6!1.03!9.62!DLX6;;chr3:128206762..128206781,-!p2@GATA2!1.02!59.78!GATA2;;chr9:14314131..14314147,-!p2@NFIB!1.02!54.24!NFIB;;chr20:32274179..32274213,-!p1@E2F1!1.00!60.36!E2F1;;chr19:49140572..49140594,-!p2@DBP!1.00!14.58!DBP;;chr20:21494654..21494678,-!p2@NKX2-2!1.00!9.04!NKX2-2;;chr8:128747729..128747748,+!p14@MYC!1.00!9.04!MYC;;chr12:54779511..54779577,-!p5@ZNF385A!1.00!9.04!ZNF385A;;chr14:76842457..76842494,+!p1@ESRRB!1.00!9.04!ESRRB;;chr9:114287433..114287513,+!p1@ZNF483!0.99!23.33!ZNF483;;chr8:128750983..128751021,+!p11@MYC!0.99!12.54!MYC;;chr5:150284532..150284549,-!p1@ZNF300!0.98!18.08!ZNF300;;chr1:38512457..38512474,-!p1@POU3F1!0.98!9.33!POU3F1;;chr1:197886461..197886558,+!p1@LHX9!0.98!8.46!LHX9;;chr7:96654026..96654061,-!p2@DLX5!0.98!8.46!DLX5;;chr9:132427883..132427951,+!p2@PRRX2!0.98!8.46!PRRX2;;chr17:38256822..38256851,-!p1@NR1D1!0.97!66.78!NR1D1;;chr8:128750493..128750522,+!p10@MYC!0.97!12.25!MYC;;chr9:77112225..77112238,+!p2@RORB!0.96!8.16!RORB;;chr17:48046543..48046575,+!p2@DLX4!0.96!8.16!DLX4;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.96!8.16!HOXC5;;chr13:79177703..79177729,-!p2@POU4F1!0.96!8.16!POU4F1;;chr9:14314106..14314119,-!p5@NFIB!0.95!14.58!NFIB;;chr6:99282592..99282616,+!p3@POU3F2!0.95!7.87!POU3F2;;chr3:147127142..147127168,+!p1@ZIC1!0.95!7.87!ZIC1;;chr11:16629369..16629392,-!p5@SOX6!0.95!7.87!SOX6;;chr14:99737850..99737852,-!p3@BCL11B!0.95!7.87!BCL11B;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.94!30.04!HNRPK;;chr7:148581327..148581347,-!p2@EZH2!0.94!27.41!EZH2;;chr19:49140595..49140607,-!p3@DBP!0.94!11.08!DBP;;chr7:113726357..113726443,+!p1@FOXP2!0.93!13.12!FOXP2;;chr17:48046642..48046667,+!p3@DLX4!0.93!7.58!DLX4;;chr7:148581360..148581425,-!p1@EZH2!0.92!37.91!EZH2;;chr14:99738059..99738086,-!p2@BCL11B!0.92!7.29!BCL11B;;chr15:57511589..57511608,+!p4@TCF12!0.92!7.29!TCF12;;chr3:114819073..114819100,-!p10@ZBTB20!0.92!7.29!ZBTB20;;chr6:135502408..135502459,+!p2@MYB!0.91!8.46!MYB;;chr6:21597765..21597779,+!p2@SOX4!0.90!58.90!SOX4;;chr1:40367530..40367597,-!p1@MYCL1!0.90!12.83!MYCL1;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.21!HOXB7;;chr8:128752734..128752763,+!p13@MYC!0.90!8.46!MYC;;chr2:182545296..182545307,-!p3@NEUROD1!0.90!7.00!NEUROD1;;chr14:21994337..21994442,-!p1@SALL2!0.89!19.54!SALL2;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.66!TFAP2A;;chr9:14082760..14082775,-!p6@NFIB!0.89!11.37!NFIB;;chr8:128752850..128752874,+!p12@MYC!0.89!8.16!MYC;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.71!PAX9;;chr8:128750555..128750609,+!p5@MYC!0.88!13.71!MYC;;chrX:84498989..84499003,+!p1@ZNF711!0.86!8.75!ZNF711;;chr3:141105705..141105770,+!p4@ZBTB38!0.85!7.58!ZBTB38;;chr12:54785054..54785072,-!p4@ZNF385A!0.85!7.00!ZNF385A;;chr13:37494275..37494304,-!p2@SMAD9!0.85!6.12!SMAD9;;chr2:182545282..182545294,-!p2@NEUROD1!0.85!6.12!NEUROD1;;chr6:99283040..99283063,+!p5@POU3F2!0.85!6.12!POU3F2;;chr19:45971246..45971265,+!p1@FOSB!0.84!116.93!FOSB;;chr19:12203100..12203132,+!p1@ZNF788!0.84!12.54!ZNF788;;chr8:128748470..128748487,+!p1@MYC!0.83!674.19!MYC;;chr3:18486354..18486377,-!p2@SATB1!0.83!7.29!SATB1;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.83!SOX11;;chr2:73520667..73520683,-!p1@EGR4!0.83!5.83!EGR4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.83!RUNX1T1;;chr19:57352109..57352153,-!p2@ZIM2!0.83!5.83!ZIM2;;chr1:91182854..91182860,-!p1@BARHL2!0.83!5.83!BARHL2;;chr20:21494684..21494708,-!p1@NKX2-2!0.83!5.83!NKX2-2;;chr10:119302232..119302265,+!p1@EMX2!0.83!5.83!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.83!HOXC5;;chr1:18957605..18957623,+!p3@PAX7!0.82!5.54!PAX7;;chr7:73038839..73038862,-!p1@MLXIPL!0.82!5.54!MLXIPL;;chr3:40547564..40547616,+!p1@ZNF620!0.81!7.87!ZNF620;;chr9:132427972..132428056,+!p1@PRRX2!0.81!7.29!PRRX2;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.42!HOXB2;;chr14:21994449..21994524,-!p2@SALL2!0.80!16.91!SALL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.80!6.12!TFAP2A;;chr17:46806419..46806438,-!p4@HOXB13!0.80!5.25!HOXB13;;chr1:8938709..8938720,-!p3@ENO1!0.79!274.69!ENO1;;chr16:29819446..29819471,+!p9@MAZ!0.79!16.62!MAZ;;chr9:14083467..14083483,-!p4@NFIB!0.79!13.71!NFIB;;chr1:61548069..61548102,+!p3@NFIA!0.79!13.41!NFIA;;chr1:43148625..43148710,+!p3@YBX1!0.79!9.62!YBX1;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.46!TONSL;;chr3:114819124..114819200,-!p3@ZBTB20!0.78!12.54!ZBTB20;;chr18:6414884..6414942,-!p1@L3MBTL4!0.78!6.42!L3MBTL4;;chr17:42295777..42295816,-!p7@UBTF!0.78!6.12!UBTF;;chr5:50679228..50679288,+!p1@ISL1!0.78!4.96!ISL1;;chr19:50432453..50432468,+!p1@ATF5!0.77!299.77!ATF5;;chr20:32274150..32274166,-!p2@E2F1!0.77!9.62!E2F1;;chr7:149470540..149470596,-!p2@ZNF467!0.77!6.71!ZNF467;;chr3:141747459..141747475,-!p1@TFDP2!0.75!42.57!TFDP2;;chr19:13134457..13134462,+!p5@NFIX!0.75!8.75!NFIX;;chr17:46622229..46622257,-!p6@HOXB2!0.75!5.54!HOXB2;;chr17:46806016..46806029,-!p5@HOXB13!0.75!4.67!HOXB13;;chr19:47538560..47538591,+!p2@NPAS1!0.75!4.67!NPAS1;;chr2:66662281..66662308,+!p1@MEIS1!0.74!16.91!MEIS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.74!12.83!ZFPM2;;chr16:29819403..29819442,+!p5@MAZ!0.73!40.24!MAZ;;chr1:8763463..8763499,-!p6@RERE!0.73!13.12!RERE;;chr9:99180617..99180658,-!p1@ZNF367!0.73!10.21!ZNF367;;chr1:164528616..164528660,+!p5@PBX1!0.73!9.62!PBX1;;chr11:8102819..8102845,+!p3@TUB!0.73!5.54!TUB;;chr1:18958008..18958023,+!p2@PAX7!0.73!4.37!PAX7;;chr5:158526756..158526797,-!p3@EBF1!0.73!4.37!EBF1;;chr11:8102846..8102892,+!p1@TUB!0.72!6.12!TUB;;chr6:20402102..20402152,+!p1@E2F3!0.71!18.66!E2F3;;chr15:61521417..61521460,-!p2@RORA!0.71!9.91!RORA;;chr11:8102749..8102769,+!p2@TUB!0.71!8.46!TUB;;chr3:169381420..169381535,-!p1@MECOM!0.71!4.96!MECOM;;chr22:41763452..41763466,+!p2@TEF!0.71!4.08!TEF;;chr2:172949484..172949522,+!p1@DLX1!0.71!4.08!DLX1;;chr3:189348969..189349018,+!p4@TP63!0.71!4.08!TP63;;chr17:48046671..48046697,+!p4@DLX4!0.71!4.08!DLX4;;chr20:62795799..62795819,+!p1@MYT1!0.71!4.08!MYT1;;chr9:14083091..14083096,-!p12@NFIB!0.71!4.08!NFIB;;chr9:129376201..129376225,+!p1@LMX1B!0.71!4.08!LMX1B;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.08!HOXA7;;chr8:93074848..93074871,-!p3@RUNX1T1!0.71!4.08!RUNX1T1;;chr6:31126291..31126399,+!p1@TCF19!0.70!43.45!TCF19;;chr5:137804484..137804498,+!p2@EGR1!0.70!17.79!EGR1;;chr14:73360799..73360817,-!p1@DPF3!0.70!15.46!DPF3;;chr19:49139477..49139552,-!p4@DBP!0.70!5.25!DBP;;chr16:29817841..29817865,+!p1@MAZ!0.68!93.31!MAZ;;chr16:4322832..4322907,-!p1@TFAP4!0.68!32.95!TFAP4;;chr5:138609782..138609826,+!p5@MATR3!0.68!28.29!MATR3;;chr17:42295897..42295953,-!p10@UBTF!0.68!5.25!UBTF;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!4.96!ZFPM2;;chr5:158527104..158527135,-!p4@EBF1!0.68!3.79!EBF1;;chr6:100061724..100061753,+!p1@PRDM13!0.68!3.79!PRDM13;;chr6:99282570..99282591,+!p4@POU3F2!0.68!3.79!POU3F2;;chr1:18957627..18957640,+!p4@PAX7!0.68!3.79!PAX7;;chr2:176987441..176987454,+!p1@HOXD9!0.68!3.79!HOXD9;;chr20:39317868..39317884,-!p1@MAFB!0.67!51.03!MAFB;;chr4:38665883..38665922,+!p3@KLF3!0.67!15.75!KLF3;;chr5:138647473..138647476,+!p6@MATR3!0.67!10.21!MATR3;;chr19:31840130..31840160,-!p2@TSHZ3!0.67!6.12!TSHZ3;;chr19:11750566..11750627,+!p1@ZNF833P!0.67!5.25!ZNF833P;;chr1:23857325..23857416,-!p2@E2F2!0.67!4.37!E2F2;;chr6:15246200..15246214,+!p2@JARID2!0.66!11.08!JARID2;;chr1:33004734..33004807,+!p2@ZBTB8A!0.66!7.29!ZBTB8A;;chr2:145277640..145277771,-!p1@ZEB2!0.65!54.82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| ||
Line 36: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10719-109I8 | |id=FF:10719-109I8 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100729 | |is_a=EFO:0002091;;FF:0000210;;FF:0100729 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11846 | |||
|library_id_phase_based=2:CNhs11846 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10719 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10719 | |||
|name=carcinoid cell line:SK-PN-DW | |name=carcinoid cell line:SK-PN-DW | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11846,LSID829,release010,COMPLETED | |profile_hcage=CNhs11846,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 77: | ||
|rna_weight_ug=49.20183 | |rna_weight_ug=49.20183 | ||
|sample_age=17 | |sample_age=17 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-2139 | |sample_cell_catalog=CRL-2139 | ||
|sample_cell_line=SK-PN-DW | |sample_cell_line=SK-PN-DW | ||
Line 80: | Line 99: | ||
|top_motifs=PITX1..3:3.3524894386;ZBTB16:3.07654185942;FOXP1:3.01707211378;AHR_ARNT_ARNT2:2.49116896838;TOPORS:2.47202502486;POU1F1:2.32729495134;POU3F1..4:2.31812440927;ALX1:2.18499757326;NANOG:2.10953267128;HOXA9_MEIS1:1.9743712187;CDX1,2,4:1.91786440605;PAX4:1.89594105358;BREu{core}:1.86771195827;PBX1:1.6797233562;IKZF2:1.63121991451;NRF1:1.62707857239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.56519867091;POU5F1:1.54802873626;E2F1..5:1.53946116088;AIRE:1.38172833028;ADNP_IRX_SIX_ZHX:1.34627577889;CRX:1.33937483154;PAX6:1.31292615421;FOXD3:1.26395097431;DBP:1.25859672709;FOX{I1,J2}:1.24319379931;NKX6-1,2:1.24313535431;POU6F1:1.22425641361;NFY{A,B,C}:1.20960284889;OCT4_SOX2{dimer}:1.10047473752;NKX2-1,4:1.09991889419;ZNF143:1.07069688621;ZNF384:1.04963396322;GFI1:1.0282725322;YY1:1.02014705985;RORA:1.0065040695;EVI1:1.00442115899;NKX3-1:0.986815020749;T:0.961655041929;CDC5L:0.940609507402;RBPJ:0.912844786848;CUX2:0.889618095672;STAT5{A,B}:0.874866385227;TFDP1:0.861515122525;PRRX1,2:0.83543394929;TAL1_TCF{3,4,12}:0.825694954616;HOX{A6,A7,B6,B7}:0.816416268206;TEF:0.759048500701;NR6A1:0.707623335414;MYB:0.673385094224;FOXM1:0.661272357286;LHX3,4:0.657521865204;GFI1B:0.616740060262;NKX2-3_NKX2-5:0.609331448317;PAX3,7:0.589182584997;ATF5_CREB3:0.578263767523;RFX1:0.54943894848;PAX8:0.548676535073;HOX{A4,D4}:0.542430863682;bHLH_family:0.509604648894;HOX{A5,B5}:0.462754520849;SOX{8,9,10}:0.461178752742;MZF1:0.4413120635;NKX2-2,8:0.421923922308;SOX17:0.414699374748;GATA4:0.395915585294;BPTF:0.373627652148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.372395419925;FOXL1:0.370437863844;HIF1A:0.357662098206;KLF4:0.321259142216;CREB1:0.320741546852;GZF1:0.301155613238;ELK1,4_GABP{A,B1}:0.241299998309;RFX2..5_RFXANK_RFXAP:0.234799845462;UFEwm:0.231813667876;ATF4:0.222310886525;JUN:0.216445042432;SOX5:0.213298496528;TLX1..3_NFIC{dimer}:0.188179017533;FOXQ1:0.140045206668;PRDM1:0.121316387365;FOXA2:0.120030126198;HAND1,2:0.111616762082;POU2F1..3:0.0568291737183;ZFP161:0.0536304919567;HBP1_HMGB_SSRP1_UBTF:0.0481560333594;DMAP1_NCOR{1,2}_SMARC:0.048151153979;PDX1:0.041667514432;FOXP3:0.0411405698969;LMO2:0.0410225033218;ONECUT1,2:0.0385657495071;PAX2:0.00877195726484;MEF2{A,B,C,D}:-0.00110845413268;EGR1..3:-0.00842741249274;HES1:-0.0138454587441;GTF2I:-0.0278245215586;EN1,2:-0.036479799079;MYFfamily:-0.038036560837;FOXN1:-0.057151302655;REST:-0.0682823441281;MED-1{core}:-0.0745535453939;ATF6:-0.079221442324;NR1H4:-0.0861042716948;MYBL2:-0.0963216821924;PAX5:-0.110982757997;XBP1:-0.12512764398;PATZ1:-0.125198991736;HNF1A:-0.125232619933;ZNF423:-0.13318086265;RREB1:-0.137332412461;LEF1_TCF7_TCF7L1,2:-0.153892531139;ATF2:-0.161088782355;HSF1,2:-0.195872659061;AR:-0.199389137055;STAT1,3:-0.202087752134;ARID5B:-0.248601348212;NKX3-2:-0.26167860093;VSX1,2:-0.262733488848;FOX{D1,D2}:-0.263091796673;GATA6:-0.264533617446;SOX2:-0.283022729604;MYOD1:-0.283463923897;ZIC1..3:-0.288237068437;NFE2L2:-0.306886944269;TGIF1:-0.309137834787;FOXO1,3,4:-0.311237430402;ESRRA:-0.313357593728;ZBTB6:-0.327396196717;SNAI1..3:-0.331732570723;ZEB1:-0.340991768661;RUNX1..3:-0.381356887897;NFIL3:-0.405349205678;NHLH1,2:-0.419982345835;HMGA1,2:-0.421713710432;FOX{F1,F2,J1}:-0.423117351805;SPIB:-0.452669676333;HNF4A_NR2F1,2:-0.478391723953;SP1:-0.483586602374;FOSL2:-0.521494508809;GTF2A1,2:-0.545155834645;HMX1:-0.547609409557;TFAP2B:-0.5497535921;RXR{A,B,G}:-0.554334854022;TBX4,5:-0.55803139582;NFKB1_REL_RELA:-0.570082968643;TBP:-0.570189181268;PAX1,9:-0.584923234094;HIC1:-0.585187986554;ALX4:-0.591434650908;NFIX:-0.603625710223;ZNF238:-0.614312211837;CEBPA,B_DDIT3:-0.632348034674;HLF:-0.645527978702;MTF1:-0.670522386546;SMAD1..7,9:-0.706189578393;NFE2:-0.711559034578;FOS_FOS{B,L1}_JUN{B,D}:-0.747498693166;BACH2:-0.76149171586;SPI1:-0.77131190469;ELF1,2,4:-0.77757381022;TEAD1:-0.78923767026;MTE{core}:-0.79251732133;IRF7:-0.804568305723;NFE2L1:-0.804911960045;ETS1,2:-0.819120455872;MAZ:-0.821522870784;NR5A1,2:-0.838435747337;IRF1,2:-0.896747642413;TLX2:-0.917254605962;SREBF1,2:-0.942950740853;EBF1:-0.976029990585;SPZ1:-1.00254321807;IKZF1:-1.01749875205;NR3C1:-1.08271251545;XCPE1{core}:-1.09538944466;STAT2,4,6:-1.15037386191;SRF:-1.16808771056;NANOG{mouse}:-1.17955452145;GLI1..3:-1.21427634789;TP53:-1.22710913956;ZNF148:-1.25006459823;MAFB:-1.25786913631;PPARG:-1.27016212013;TFAP2{A,C}:-1.3132357586;NFATC1..3:-1.36843226153;GCM1,2:-1.42768803309;TFAP4:-1.78009298217;ESR1:-2.00725580174;RXRA_VDR{dimer}:-2.02704079847;EP300:-2.64026538546;TFCP2:-2.7631788282 | |top_motifs=PITX1..3:3.3524894386;ZBTB16:3.07654185942;FOXP1:3.01707211378;AHR_ARNT_ARNT2:2.49116896838;TOPORS:2.47202502486;POU1F1:2.32729495134;POU3F1..4:2.31812440927;ALX1:2.18499757326;NANOG:2.10953267128;HOXA9_MEIS1:1.9743712187;CDX1,2,4:1.91786440605;PAX4:1.89594105358;BREu{core}:1.86771195827;PBX1:1.6797233562;IKZF2:1.63121991451;NRF1:1.62707857239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.56519867091;POU5F1:1.54802873626;E2F1..5:1.53946116088;AIRE:1.38172833028;ADNP_IRX_SIX_ZHX:1.34627577889;CRX:1.33937483154;PAX6:1.31292615421;FOXD3:1.26395097431;DBP:1.25859672709;FOX{I1,J2}:1.24319379931;NKX6-1,2:1.24313535431;POU6F1:1.22425641361;NFY{A,B,C}:1.20960284889;OCT4_SOX2{dimer}:1.10047473752;NKX2-1,4:1.09991889419;ZNF143:1.07069688621;ZNF384:1.04963396322;GFI1:1.0282725322;YY1:1.02014705985;RORA:1.0065040695;EVI1:1.00442115899;NKX3-1:0.986815020749;T:0.961655041929;CDC5L:0.940609507402;RBPJ:0.912844786848;CUX2:0.889618095672;STAT5{A,B}:0.874866385227;TFDP1:0.861515122525;PRRX1,2:0.83543394929;TAL1_TCF{3,4,12}:0.825694954616;HOX{A6,A7,B6,B7}:0.816416268206;TEF:0.759048500701;NR6A1:0.707623335414;MYB:0.673385094224;FOXM1:0.661272357286;LHX3,4:0.657521865204;GFI1B:0.616740060262;NKX2-3_NKX2-5:0.609331448317;PAX3,7:0.589182584997;ATF5_CREB3:0.578263767523;RFX1:0.54943894848;PAX8:0.548676535073;HOX{A4,D4}:0.542430863682;bHLH_family:0.509604648894;HOX{A5,B5}:0.462754520849;SOX{8,9,10}:0.461178752742;MZF1:0.4413120635;NKX2-2,8:0.421923922308;SOX17:0.414699374748;GATA4:0.395915585294;BPTF:0.373627652148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.372395419925;FOXL1:0.370437863844;HIF1A:0.357662098206;KLF4:0.321259142216;CREB1:0.320741546852;GZF1:0.301155613238;ELK1,4_GABP{A,B1}:0.241299998309;RFX2..5_RFXANK_RFXAP:0.234799845462;UFEwm:0.231813667876;ATF4:0.222310886525;JUN:0.216445042432;SOX5:0.213298496528;TLX1..3_NFIC{dimer}:0.188179017533;FOXQ1:0.140045206668;PRDM1:0.121316387365;FOXA2:0.120030126198;HAND1,2:0.111616762082;POU2F1..3:0.0568291737183;ZFP161:0.0536304919567;HBP1_HMGB_SSRP1_UBTF:0.0481560333594;DMAP1_NCOR{1,2}_SMARC:0.048151153979;PDX1:0.041667514432;FOXP3:0.0411405698969;LMO2:0.0410225033218;ONECUT1,2:0.0385657495071;PAX2:0.00877195726484;MEF2{A,B,C,D}:-0.00110845413268;EGR1..3:-0.00842741249274;HES1:-0.0138454587441;GTF2I:-0.0278245215586;EN1,2:-0.036479799079;MYFfamily:-0.038036560837;FOXN1:-0.057151302655;REST:-0.0682823441281;MED-1{core}:-0.0745535453939;ATF6:-0.079221442324;NR1H4:-0.0861042716948;MYBL2:-0.0963216821924;PAX5:-0.110982757997;XBP1:-0.12512764398;PATZ1:-0.125198991736;HNF1A:-0.125232619933;ZNF423:-0.13318086265;RREB1:-0.137332412461;LEF1_TCF7_TCF7L1,2:-0.153892531139;ATF2:-0.161088782355;HSF1,2:-0.195872659061;AR:-0.199389137055;STAT1,3:-0.202087752134;ARID5B:-0.248601348212;NKX3-2:-0.26167860093;VSX1,2:-0.262733488848;FOX{D1,D2}:-0.263091796673;GATA6:-0.264533617446;SOX2:-0.283022729604;MYOD1:-0.283463923897;ZIC1..3:-0.288237068437;NFE2L2:-0.306886944269;TGIF1:-0.309137834787;FOXO1,3,4:-0.311237430402;ESRRA:-0.313357593728;ZBTB6:-0.327396196717;SNAI1..3:-0.331732570723;ZEB1:-0.340991768661;RUNX1..3:-0.381356887897;NFIL3:-0.405349205678;NHLH1,2:-0.419982345835;HMGA1,2:-0.421713710432;FOX{F1,F2,J1}:-0.423117351805;SPIB:-0.452669676333;HNF4A_NR2F1,2:-0.478391723953;SP1:-0.483586602374;FOSL2:-0.521494508809;GTF2A1,2:-0.545155834645;HMX1:-0.547609409557;TFAP2B:-0.5497535921;RXR{A,B,G}:-0.554334854022;TBX4,5:-0.55803139582;NFKB1_REL_RELA:-0.570082968643;TBP:-0.570189181268;PAX1,9:-0.584923234094;HIC1:-0.585187986554;ALX4:-0.591434650908;NFIX:-0.603625710223;ZNF238:-0.614312211837;CEBPA,B_DDIT3:-0.632348034674;HLF:-0.645527978702;MTF1:-0.670522386546;SMAD1..7,9:-0.706189578393;NFE2:-0.711559034578;FOS_FOS{B,L1}_JUN{B,D}:-0.747498693166;BACH2:-0.76149171586;SPI1:-0.77131190469;ELF1,2,4:-0.77757381022;TEAD1:-0.78923767026;MTE{core}:-0.79251732133;IRF7:-0.804568305723;NFE2L1:-0.804911960045;ETS1,2:-0.819120455872;MAZ:-0.821522870784;NR5A1,2:-0.838435747337;IRF1,2:-0.896747642413;TLX2:-0.917254605962;SREBF1,2:-0.942950740853;EBF1:-0.976029990585;SPZ1:-1.00254321807;IKZF1:-1.01749875205;NR3C1:-1.08271251545;XCPE1{core}:-1.09538944466;STAT2,4,6:-1.15037386191;SRF:-1.16808771056;NANOG{mouse}:-1.17955452145;GLI1..3:-1.21427634789;TP53:-1.22710913956;ZNF148:-1.25006459823;MAFB:-1.25786913631;PPARG:-1.27016212013;TFAP2{A,C}:-1.3132357586;NFATC1..3:-1.36843226153;GCM1,2:-1.42768803309;TFAP4:-1.78009298217;ESR1:-2.00725580174;RXRA_VDR{dimer}:-2.02704079847;EP300:-2.64026538546;TFCP2:-2.7631788282 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10719-109I8;search_select_hide=table117:FF:10719-109I8 | |||
}} | }} |
Latest revision as of 15:01, 3 June 2020
Name: | carcinoid cell line:SK-PN-DW |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11846 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11846
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11846
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.421 |
10 | 10 | 0.748 |
100 | 100 | 0.148 |
101 | 101 | 0.408 |
102 | 102 | 0.671 |
103 | 103 | 0.0573 |
104 | 104 | 0.506 |
105 | 105 | 0.336 |
106 | 106 | 0.00199 |
107 | 107 | 0.0211 |
108 | 108 | 0.671 |
109 | 109 | 0.248 |
11 | 11 | 0.992 |
110 | 110 | 0.876 |
111 | 111 | 0.508 |
112 | 112 | 0.185 |
113 | 113 | 0.697 |
114 | 114 | 0.0459 |
115 | 115 | 0.829 |
116 | 116 | 0.567 |
117 | 117 | 0.82 |
118 | 118 | 0.721 |
119 | 119 | 0.631 |
12 | 12 | 0.345 |
120 | 120 | 0.691 |
121 | 121 | 0.25 |
122 | 122 | 0.635 |
123 | 123 | 2.09199e-5 |
124 | 124 | 0.0792 |
125 | 125 | 0.981 |
126 | 126 | 0.229 |
127 | 127 | 0.213 |
128 | 128 | 0.131 |
129 | 129 | 0.737 |
13 | 13 | 0.926 |
130 | 130 | 0.995 |
131 | 131 | 0.462 |
132 | 132 | 0.683 |
133 | 133 | 0.719 |
134 | 134 | 0.987 |
135 | 135 | 0.0947 |
136 | 136 | 0.382 |
137 | 137 | 0.678 |
138 | 138 | 0.696 |
139 | 139 | 0.679 |
14 | 14 | 0.463 |
140 | 140 | 0.949 |
141 | 141 | 0.242 |
142 | 142 | 0.738 |
143 | 143 | 0.0537 |
144 | 144 | 0.75 |
145 | 145 | 0.451 |
146 | 146 | 0.691 |
147 | 147 | 0.978 |
148 | 148 | 0.487 |
149 | 149 | 0.13 |
15 | 15 | 0.832 |
150 | 150 | 0.19 |
151 | 151 | 0.269 |
152 | 152 | 0.00136 |
153 | 153 | 0.961 |
154 | 154 | 0.168 |
155 | 155 | 0.808 |
156 | 156 | 0.867 |
157 | 157 | 0.666 |
158 | 158 | 0.4 |
159 | 159 | 0.257 |
16 | 16 | 0.267 |
160 | 160 | 0.731 |
161 | 161 | 0.413 |
162 | 162 | 0.762 |
163 | 163 | 0.501 |
164 | 164 | 0.414 |
165 | 165 | 0.805 |
166 | 166 | 0.827 |
167 | 167 | 0.401 |
168 | 168 | 0.199 |
169 | 169 | 0.0365 |
17 | 17 | 0.461 |
18 | 18 | 0.36 |
19 | 19 | 0.13 |
2 | 2 | 0.0496 |
20 | 20 | 0.492 |
21 | 21 | 0.623 |
22 | 22 | 0.0328 |
23 | 23 | 0.0337 |
24 | 24 | 0.448 |
25 | 25 | 0.8 |
26 | 26 | 0.915 |
27 | 27 | 0.106 |
28 | 28 | 0.668 |
29 | 29 | 0.732 |
3 | 3 | 0.984 |
30 | 30 | 0.0531 |
31 | 31 | 0.259 |
32 | 32 | 0.0391 |
33 | 33 | 0.251 |
34 | 34 | 0.102 |
35 | 35 | 0.48 |
36 | 36 | 0.26 |
37 | 37 | 0.147 |
38 | 38 | 0.762 |
39 | 39 | 0.416 |
4 | 4 | 0.841 |
40 | 40 | 0.714 |
41 | 41 | 0.0652 |
42 | 42 | 0.437 |
43 | 43 | 0.274 |
44 | 44 | 0.666 |
45 | 45 | 0.243 |
46 | 46 | 0.605 |
47 | 47 | 0.702 |
48 | 48 | 0.993 |
49 | 49 | 0.986 |
5 | 5 | 0.39 |
50 | 50 | 0.425 |
51 | 51 | 0.497 |
52 | 52 | 0.114 |
53 | 53 | 0.269 |
54 | 54 | 0.367 |
55 | 55 | 0.29 |
56 | 56 | 0.794 |
57 | 57 | 0.167 |
58 | 58 | 0.968 |
59 | 59 | 0.0282 |
6 | 6 | 0.171 |
60 | 60 | 0.0506 |
61 | 61 | 0.707 |
62 | 62 | 0.588 |
63 | 63 | 0.967 |
64 | 64 | 0.602 |
65 | 65 | 0.666 |
66 | 66 | 0.652 |
67 | 67 | 0.757 |
68 | 68 | 0.597 |
69 | 69 | 0.738 |
7 | 7 | 0.921 |
70 | 70 | 0.371 |
71 | 71 | 0.754 |
72 | 72 | 0.155 |
73 | 73 | 0.00302 |
74 | 74 | 0.934 |
75 | 75 | 0.912 |
76 | 76 | 0.52 |
77 | 77 | 0.0715 |
78 | 78 | 0.798 |
79 | 79 | 0.103 |
8 | 8 | 0.955 |
80 | 80 | 0.0143 |
81 | 81 | 0.619 |
82 | 82 | 0.996 |
83 | 83 | 0.948 |
84 | 84 | 0.631 |
85 | 85 | 0.0454 |
86 | 86 | 0.615 |
87 | 87 | 0.202 |
88 | 88 | 0.498 |
89 | 89 | 0.0951 |
9 | 9 | 0.043 |
90 | 90 | 0.066 |
91 | 91 | 0.34 |
92 | 92 | 0.503 |
93 | 93 | 0.757 |
94 | 94 | 0.714 |
95 | 95 | 0.197 |
96 | 96 | 0.786 |
97 | 97 | 0.478 |
98 | 98 | 0.581 |
99 | 99 | 0.613 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11846
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100729 carcinoid cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101533 (gastrointestinal cancer cell sample)
0100729 (carcinoid cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA