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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005160
|HumanCAGEScanFiles=NCig10063;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep1.NCig10063.10552-107I3.hg19.GCTATA.pairs.bed.gz!NCig10127;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/cervical%2520cancer%2520cell%2520line%253aD98-AH2%252c%2520tech_rep2.NCig10127.10552-107I3.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX007845;DRR008717;DRZ000142;DRZ001527;DRZ011492;DRZ012877
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.97!112.42!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.90!128.11!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.80!62.42!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!77.78!FOXQ1;;chr5:134369879..134369898,-!p2@PITX1!1.49!29.96!PITX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!23.97!ZBED1;;chr2:46524897..46524911,+!p2@EPAS1!1.39!64.06!EPAS1;;chr12:54380404..54380433,+!p3@HOXC10!1.34!20.70!HOXC10;;chr12:52445218..52445237,+!p1@NR4A1!1.32!241.84!NR4A1;;chr10:28034739..28034756,-!p1@MKX!1.32!20.04!MKX;;chr7:73038839..73038862,-!p1@MLXIPL!1.30!19.17!MLXIPL;;chrX:57619447..57619495,+!p2@ZXDB!1.29!18.52!ZXDB;;chr5:134369905..134369972,-!p1@PITX1!1.27!27.13!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!1.26!17.21!TFAP2A;;chr6:10412392..10412409,-!p4@TFAP2A!1.23!18.30!TFAP2A;;chr19:2867325..2867348,+!p1@ZNF556!1.17!13.73!ZNF556;;chr2:157189180..157189290,-!p1@NR4A2!1.15!67.98!NR4A2;;chr10:35484053..35484076,+!p1@CREM!1.14!32.14!CREM;;chr17:46682321..46682362,-!p1@HOXB6!1.14!12.75!HOXB6;;chr6:1389789..1389821,+!p1@FOXF2!1.12!16.67!FOXF2;;chr17:46703942..46703964,-!p4@HOXB9!1.11!11.87!HOXB9;;chr17:46687959..46688007,-!p2@HOXB7!1.10!15.91!HOXB7;;chr6:1312155..1312187,+!p2@FOXQ1!1.07!10.78!FOXQ1;;chr12:80084737..80084763,-!p3@PAWR!1.05!39.11!PAWR;;chr17:48072574..48072597,-!p1@DLX3!1.05!10.35!DLX3;;chr3:69915385..69915438,+!p3@MITF!1.01!9.15!MITF;;chr5:170736243..170736279,+!p1@TLX3!1.00!9.04!TLX3;;chr1:151804244..151804310,-!p1@RORC!1.00!9.04!RORC;;chr6:10419824..10419840,-!p9@TFAP2A!1.00!8.93!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.99!8.72!HOXC5;;chr5:76383070..76383117,-!p3@ZBED3!0.98!17.43!ZBED3;;chrX:2418598..2418621,-!p2@ZBED1!0.98!8.61!ZBED1;;chr13:45010939..45011033,-!p1@TSC22D1!0.97!556.57!TSC22D1;;chr8:128748308..128748324,+!p2@MYC!0.97!236.18!MYC;;chr11:12696071..12696086,+!p3@TEAD1!0.97!11.11!TEAD1;;chr17:53342311..53342400,+!p1@HLF!0.96!9.26!HLF;;chr7:101917447..101917479,+!p4@CUX1!0.96!8.17!CUX1;;chr2:238592039..238592054,+!p4@LRRFIP1!0.94!7.73!LRRFIP1;;chr3:69915369..69915381,+!p4@MITF!0.93!7.52!MITF;;chr5:43120995..43121052,+!p1@ZNF131!0.92!38.46!ZNF131;;chr6:10415263..10415274,-!p8@TFAP2A!0.90!6.97!TFAP2A;;chr19:45971246..45971265,+!p1@FOSB!0.89!133.23!FOSB;;chr5:150284532..150284549,-!p1@ZNF300!0.89!14.49!ZNF300;;chr15:96875657..96875760,+!p14@NR2F2!0.89!11.44!NR2F2;;chr17:46703687..46703740,-!p1@HOXB9!0.89!6.75!HOXB9;;chr6:34205372..34205412,+!p5@HMGA1!0.87!33.99!HMGA1;;chr11:12696002..12696022,+!p2@TEAD1!0.87!16.45!TEAD1;;chr1:44513995..44514031,+!p1@KLF17!0.87!6.43!KLF17;;chr10:28034772..28034783,-!p4@MKX!0.86!6.32!MKX;;chr7:101460882..101460923,+!p5@CUX1!0.86!6.21!CUX1;;chr9:102584262..102584276,+!p1@NR4A3!0.85!14.27!NR4A3;;chr6:28973090..28973094,-!p1@ZNF311!0.85!7.84!ZNF311;;chr6:10419768..10419819,-!p6@TFAP2A!0.84!5.99!TFAP2A;;chr19:46271505..46271575,-!p2@SIX5!0.83!15.47!SIX5;;chr7:1577111..1577132,+!p4@MAFK!0.83!6.54!MAFK;;chr2:46524878..46524891,+!p3@EPAS1!0.81!10.02!EPAS1;;chrX:107018969..107019024,-!p6@TSC22D3!0.81!7.73!TSC22D3;;chr2:63277948..63277974,+!p1@OTX1!0.81!5.45!OTX1;;chr7:101917407..101917443,+!p3@CUX1!0.81!5.45!CUX1;;chr9:96717629..96717644,-!p1@BARX1!0.80!5.34!BARX1;;chr1:161736038..161736056,+!p4@ATF6!0.79!12.75!ATF6;;chr20:6748325..6748352,+!p1@BMP2!0.79!7.73!BMP2;;chr9:124976185..124976212,-!p4@LHX6!0.79!5.12!LHX6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.79!5.12!SEBOX;;chr1:212782094..212782109,+!p1@ATF3!0.78!151.53!ATF3;;chr6:28973366..28973394,-!p2@ZNF311!0.78!6.21!ZNF311;;chr5:176738887..176738934,-!p1@MXD3!0.77!35.41!MXD3;;chr3:128206762..128206781,-!p2@GATA2!0.77!33.23!GATA2;;chr1:23857698..23857733,-!p1@E2F2!0.77!9.48!E2F2;;chr11:31832658..31832681,-!p1@PAX6!0.77!4.90!PAX6;;chr15:41913690..41913753,+!p2@MGA!0.76!12.20!MGA;;chr2:75937794..75937867,-!p2@GCFC2!0.76!11.22!GCFC2;;chr15:67418119..67418162,+!p5@SMAD3!0.76!5.34!SMAD3;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.79!HOXC10;;chrX:131623044..131623089,-!p1@MBNL3!0.75!20.92!MBNL3;;chr9:110250697..110250738,-!p2@KLF4!0.74!5.34!KLF4;;chr9:126774018..126774055,+!p1@LHX2!0.74!4.47!LHX2;;chr6:126102292..126102329,+!p3@NCOA7!0.73!15.80!NCOA7;;chr9:100616439..100616476,+!p3@FOXE1!0.73!4.36!FOXE1;;chr5:16465902..16465917,-!p1@ZNF622!0.71!110.57!ZNF622;;chr5:76383133..76383186,-!p2@ZBED3!0.71!9.04!ZBED3;;chr17:46806067..46806097,-!p1@HOXB13!0.71!4.14!HOXB13;;chr12:54380036..54380091,+!p4@HOXC10!0.71!4.14!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.71!4.14!HOXC5;;chr2:113012592..113012671,-!p1@ZC3H8!0.70!77.78!ZC3H8;;chr17:41277372..41277418,-!p1@BRCA1!0.70!16.34!BRCA1;;chr7:148581327..148581347,-!p2@EZH2!0.70!15.36!EZH2;;chr19:49140609..49140643,-!p1@DBP!0.69!24.73!DBP;;chr9:99180617..99180658,-!p1@ZNF367!0.68!9.04!ZNF367;;chr6:28303901..28303944,-!p2@ZNF323!0.68!6.54!ZNF323;;chrX:131624056..131624069,-!p2@MBNL3!0.68!5.34!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!0.67!4.79!MBNL3;;chr9:102584241..102584261,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Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aD98-AH2.CNhs11288.10552-107I3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aD98-AH2.CNhs11288.10552-107I3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aD98-AH2.CNhs11288.10552-107I3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aD98-AH2.CNhs11288.10552-107I3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aD98-AH2.CNhs11288.10552-107I3.hg38.nobarcode.ctss.bed.gz
|id=FF:10552-107I3
|id=FF:10552-107I3
|is_a=EFO:0002091;;FF:0000210;;FF:0101967
|is_a=EFO:0002091;;FF:0000210;;FF:0101967
|is_obsolete=
|is_obsolete=
|library_id=CNhs11288
|library_id_phase_based=2:CNhs11288
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10552
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10552
|name=cervical cancer cell line:D98-AH2
|name=cervical cancer cell line:D98-AH2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=NCig10063,,,
|profile_cagescan=NCig10063,,,
|profile_hcage=CNhs11288,LSID759,release008,COMPLETED
|profile_hcage=CNhs11288,LSID759,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 61: Line 79:
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|sample_cell_line=D98-AH2
Line 82: Line 101:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.70652013438;ELK1,4_GABP{A,B1}:2.47713655955;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.01756271496;bHLH_family:1.85637541977;HOX{A6,A7,B6,B7}:1.8545014033;HES1:1.76531583895;E2F1..5:1.5000281673;NKX3-1:1.44673627788;FOXQ1:1.44324465993;ZNF143:1.39383147563;HIF1A:1.29468401848;VSX1,2:1.25324464657;ATF4:1.2506000609;NRF1:1.24403632226;RORA:1.23575221103;YY1:1.12302091081;CREB1:1.09767635229;NR6A1:1.00065725925;PBX1:0.973092515075;FOXN1:0.953893110721;NR5A1,2:0.933364843341;NKX2-1,4:0.846919470493;IKZF1:0.822550161654;CEBPA,B_DDIT3:0.806726947469;TBX4,5:0.77658260588;FOX{F1,F2,J1}:0.760832477749;AHR_ARNT_ARNT2:0.742781941421;MYB:0.670556214194;EN1,2:0.639120706336;RBPJ:0.638443282057;ARID5B:0.606446526457;ESRRA:0.604341611647;CRX:0.599510958427;BREu{core}:0.59178174078;PPARG:0.581833051262;NFY{A,B,C}:0.581424802446;STAT1,3:0.575224057407;TFDP1:0.574022617564;FOX{I1,J2}:0.5580360341;PRRX1,2:0.543614237585;ELF1,2,4:0.530741584487;HOXA9_MEIS1:0.516640770286;POU1F1:0.514382478005;ATF5_CREB3:0.512749560533;PITX1..3:0.505865745894;POU2F1..3:0.477406460753;HBP1_HMGB_SSRP1_UBTF:0.430595096872;HOX{A5,B5}:0.427116582387;GFI1:0.412007267888;PDX1:0.397658609994;LHX3,4:0.343800064936;FOXP1:0.337616878256;LMO2:0.329185537877;HLF:0.326789004476;FOXM1:0.311513664815;ZBTB16:0.304923861319;EVI1:0.268192616581;LEF1_TCF7_TCF7L1,2:0.265986058165;NKX6-1,2:0.265912902834;ZEB1:0.246726828404;TEAD1:0.243435012127;HNF4A_NR2F1,2:0.228924444837;TEF:0.201132034731;PAX1,9:0.197057020576;MEF2{A,B,C,D}:0.189493328552;ADNP_IRX_SIX_ZHX:0.175005005049;NANOG:0.082240742794;BPTF:0.0725219629553;CUX2:0.0693421747757;RXR{A,B,G}:0.0683458943433;PAX3,7:0.0635026978346;PAX2:0.0588017982585;IRF7:0.0530749220206;SNAI1..3:0.0501689977962;RFX1:0.0472486868078;DBP:0.0254751885912;GATA6:0.0170529605746;TP53:0.0141136924857;OCT4_SOX2{dimer}:0.00106135823773;FOX{D1,D2}:-0.00845652578332;NR1H4:-0.0159152086131;TLX1..3_NFIC{dimer}:-0.015915477507;POU5F1:-0.0278058871346;T:-0.0281048091737;JUN:-0.0479987245362;PAX4:-0.061530607852;FOXA2:-0.0651722610302;STAT5{A,B}:-0.0776546958569;RFX2..5_RFXANK_RFXAP:-0.0844332789921;POU6F1:-0.0846906499669;NFE2:-0.106067940896;AIRE:-0.137965545512;CDX1,2,4:-0.149004907731;ATF2:-0.180961125397;NFIL3:-0.18200314664;MYBL2:-0.184808323043;ATF6:-0.186280988396;FOXD3:-0.1890678855;ZNF423:-0.194285440222;TOPORS:-0.212788199299;SOX2:-0.219320694736;HMGA1,2:-0.221175858341;FOXL1:-0.237945008818;NFE2L2:-0.238194081158;HNF1A:-0.247554160708;PAX8:-0.250290488556;IRF1,2:-0.255802439471;HOX{A4,D4}:-0.260526251413;MAFB:-0.262008011744;GLI1..3:-0.279720382073;GTF2A1,2:-0.285174670908;SOX{8,9,10}:-0.296331481648;BACH2:-0.302250096498;SOX5:-0.303523533497;IKZF2:-0.30763114155;FOS_FOS{B,L1}_JUN{B,D}:-0.31756787509;NKX2-3_NKX2-5:-0.319887522889;ZNF148:-0.326017404296;CDC5L:-0.333554508143;ZBTB6:-0.341418572763;FOXO1,3,4:-0.359748307656;MYOD1:-0.360375540933;STAT2,4,6:-0.361653790698;ZFP161:-0.381963477838;NFE2L1:-0.396866279364;HIC1:-0.402793491619;NR3C1:-0.412457427496;NFKB1_REL_RELA:-0.422812811458;MTF1:-0.432117457562;FOXP3:-0.469020430037;AR:-0.472571998159;ZNF384:-0.480703567716;SPIB:-0.482777065946;FOSL2:-0.483572421454;DMAP1_NCOR{1,2}_SMARC:-0.494129787081;NKX3-2:-0.520250234445;PAX5:-0.528424398887;EBF1:-0.53878934472;XBP1:-0.541211097972;MED-1{core}:-0.551710942317;REST:-0.553761695047;HAND1,2:-0.564215725029;RXRA_VDR{dimer}:-0.564670489789;GZF1:-0.565188237976;SREBF1,2:-0.568376954334;RUNX1..3:-0.575382708857;NKX2-2,8:-0.575923393895;SPI1:-0.579228150354;MTE{core}:-0.580224096752;EP300:-0.585592832095;KLF4:-0.612880190383;GTF2I:-0.616432956061;UFEwm:-0.639599749093;NHLH1,2:-0.667920686794;NFIX:-0.676715924569;ETS1,2:-0.68646579117;TAL1_TCF{3,4,12}:-0.700711534649;ESR1:-0.728090326509;GFI1B:-0.730193323315;TFAP2{A,C}:-0.734062994595;GCM1,2:-0.746688062952;ONECUT1,2:-0.75327221215;ALX4:-0.767083196553;SRF:-0.792301696047;TFAP2B:-0.799940491682;RREB1:-0.833187375145;HSF1,2:-0.857240426245;SOX17:-0.873492247962;MAZ:-0.887112420934;TBP:-0.911237320166;PRDM1:-0.911877158544;POU3F1..4:-0.912304968674;MYFfamily:-0.997442687091;PATZ1:-1.0176501573;ZNF238:-1.02519501217;EGR1..3:-1.0418087735;ALX1:-1.04396416462;MZF1:-1.09396693022;PAX6:-1.11266399213;TLX2:-1.11455716278;TGIF1:-1.11954784659;NFATC1..3:-1.13260615601;SP1:-1.16124136206;XCPE1{core}:-1.19671531234;ZIC1..3:-1.29814853282;GATA4:-1.38233522178;NANOG{mouse}:-1.44273104423;TFCP2:-1.58941646746;SMAD1..7,9:-1.61436912623;HMX1:-1.73308112872;TFAP4:-2.0746764094;SPZ1:-2.49989115833
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.70652013438;ELK1,4_GABP{A,B1}:2.47713655955;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.01756271496;bHLH_family:1.85637541977;HOX{A6,A7,B6,B7}:1.8545014033;HES1:1.76531583895;E2F1..5:1.5000281673;NKX3-1:1.44673627788;FOXQ1:1.44324465993;ZNF143:1.39383147563;HIF1A:1.29468401848;VSX1,2:1.25324464657;ATF4:1.2506000609;NRF1:1.24403632226;RORA:1.23575221103;YY1:1.12302091081;CREB1:1.09767635229;NR6A1:1.00065725925;PBX1:0.973092515075;FOXN1:0.953893110721;NR5A1,2:0.933364843341;NKX2-1,4:0.846919470493;IKZF1:0.822550161654;CEBPA,B_DDIT3:0.806726947469;TBX4,5:0.77658260588;FOX{F1,F2,J1}:0.760832477749;AHR_ARNT_ARNT2:0.742781941421;MYB:0.670556214194;EN1,2:0.639120706336;RBPJ:0.638443282057;ARID5B:0.606446526457;ESRRA:0.604341611647;CRX:0.599510958427;BREu{core}:0.59178174078;PPARG:0.581833051262;NFY{A,B,C}:0.581424802446;STAT1,3:0.575224057407;TFDP1:0.574022617564;FOX{I1,J2}:0.5580360341;PRRX1,2:0.543614237585;ELF1,2,4:0.530741584487;HOXA9_MEIS1:0.516640770286;POU1F1:0.514382478005;ATF5_CREB3:0.512749560533;PITX1..3:0.505865745894;POU2F1..3:0.477406460753;HBP1_HMGB_SSRP1_UBTF:0.430595096872;HOX{A5,B5}:0.427116582387;GFI1:0.412007267888;PDX1:0.397658609994;LHX3,4:0.343800064936;FOXP1:0.337616878256;LMO2:0.329185537877;HLF:0.326789004476;FOXM1:0.311513664815;ZBTB16:0.304923861319;EVI1:0.268192616581;LEF1_TCF7_TCF7L1,2:0.265986058165;NKX6-1,2:0.265912902834;ZEB1:0.246726828404;TEAD1:0.243435012127;HNF4A_NR2F1,2:0.228924444837;TEF:0.201132034731;PAX1,9:0.197057020576;MEF2{A,B,C,D}:0.189493328552;ADNP_IRX_SIX_ZHX:0.175005005049;NANOG:0.082240742794;BPTF:0.0725219629553;CUX2:0.0693421747757;RXR{A,B,G}:0.0683458943433;PAX3,7:0.0635026978346;PAX2:0.0588017982585;IRF7:0.0530749220206;SNAI1..3:0.0501689977962;RFX1:0.0472486868078;DBP:0.0254751885912;GATA6:0.0170529605746;TP53:0.0141136924857;OCT4_SOX2{dimer}:0.00106135823773;FOX{D1,D2}:-0.00845652578332;NR1H4:-0.0159152086131;TLX1..3_NFIC{dimer}:-0.015915477507;POU5F1:-0.0278058871346;T:-0.0281048091737;JUN:-0.0479987245362;PAX4:-0.061530607852;FOXA2:-0.0651722610302;STAT5{A,B}:-0.0776546958569;RFX2..5_RFXANK_RFXAP:-0.0844332789921;POU6F1:-0.0846906499669;NFE2:-0.106067940896;AIRE:-0.137965545512;CDX1,2,4:-0.149004907731;ATF2:-0.180961125397;NFIL3:-0.18200314664;MYBL2:-0.184808323043;ATF6:-0.186280988396;FOXD3:-0.1890678855;ZNF423:-0.194285440222;TOPORS:-0.212788199299;SOX2:-0.219320694736;HMGA1,2:-0.221175858341;FOXL1:-0.237945008818;NFE2L2:-0.238194081158;HNF1A:-0.247554160708;PAX8:-0.250290488556;IRF1,2:-0.255802439471;HOX{A4,D4}:-0.260526251413;MAFB:-0.262008011744;GLI1..3:-0.279720382073;GTF2A1,2:-0.285174670908;SOX{8,9,10}:-0.296331481648;BACH2:-0.302250096498;SOX5:-0.303523533497;IKZF2:-0.30763114155;FOS_FOS{B,L1}_JUN{B,D}:-0.31756787509;NKX2-3_NKX2-5:-0.319887522889;ZNF148:-0.326017404296;CDC5L:-0.333554508143;ZBTB6:-0.341418572763;FOXO1,3,4:-0.359748307656;MYOD1:-0.360375540933;STAT2,4,6:-0.361653790698;ZFP161:-0.381963477838;NFE2L1:-0.396866279364;HIC1:-0.402793491619;NR3C1:-0.412457427496;NFKB1_REL_RELA:-0.422812811458;MTF1:-0.432117457562;FOXP3:-0.469020430037;AR:-0.472571998159;ZNF384:-0.480703567716;SPIB:-0.482777065946;FOSL2:-0.483572421454;DMAP1_NCOR{1,2}_SMARC:-0.494129787081;NKX3-2:-0.520250234445;PAX5:-0.528424398887;EBF1:-0.53878934472;XBP1:-0.541211097972;MED-1{core}:-0.551710942317;REST:-0.553761695047;HAND1,2:-0.564215725029;RXRA_VDR{dimer}:-0.564670489789;GZF1:-0.565188237976;SREBF1,2:-0.568376954334;RUNX1..3:-0.575382708857;NKX2-2,8:-0.575923393895;SPI1:-0.579228150354;MTE{core}:-0.580224096752;EP300:-0.585592832095;KLF4:-0.612880190383;GTF2I:-0.616432956061;UFEwm:-0.639599749093;NHLH1,2:-0.667920686794;NFIX:-0.676715924569;ETS1,2:-0.68646579117;TAL1_TCF{3,4,12}:-0.700711534649;ESR1:-0.728090326509;GFI1B:-0.730193323315;TFAP2{A,C}:-0.734062994595;GCM1,2:-0.746688062952;ONECUT1,2:-0.75327221215;ALX4:-0.767083196553;SRF:-0.792301696047;TFAP2B:-0.799940491682;RREB1:-0.833187375145;HSF1,2:-0.857240426245;SOX17:-0.873492247962;MAZ:-0.887112420934;TBP:-0.911237320166;PRDM1:-0.911877158544;POU3F1..4:-0.912304968674;MYFfamily:-0.997442687091;PATZ1:-1.0176501573;ZNF238:-1.02519501217;EGR1..3:-1.0418087735;ALX1:-1.04396416462;MZF1:-1.09396693022;PAX6:-1.11266399213;TLX2:-1.11455716278;TGIF1:-1.11954784659;NFATC1..3:-1.13260615601;SP1:-1.16124136206;XCPE1{core}:-1.19671531234;ZIC1..3:-1.29814853282;GATA4:-1.38233522178;NANOG{mouse}:-1.44273104423;TFCP2:-1.58941646746;SMAD1..7,9:-1.61436912623;HMX1:-1.73308112872;TFAP4:-2.0746764094;SPZ1:-2.49989115833
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10552-107I3;search_select_hide=table117:FF:10552-107I3
}}
}}

Latest revision as of 14:29, 3 June 2020

Name:cervical cancer cell line:D98-AH2
Species:Human (Homo sapiens)
Library ID:CNhs11288
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
ageunknown
cell typeunclassifiable
cell lineD98-AH2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005160
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11288 CAGE DRX007845 DRR008717
Accession ID Hg19

Library idBAMCTSS
CNhs11288 DRZ000142 DRZ001527
Accession ID Hg38

Library idBAMCTSS
CNhs11288 DRZ011492 DRZ012877
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10063downloaddownloaddownloaddownload
NCig10127downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0588
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0.218
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.393
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0622
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0514
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.227
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.21
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0409
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0449
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.00987
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.376
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0.913
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11288

Jaspar motifP-value
MA0002.20.00386
MA0003.10.248
MA0004.10.0045
MA0006.10.0845
MA0007.10.27
MA0009.10.739
MA0014.10.208
MA0017.10.714
MA0018.24.19232e-6
MA0019.10.178
MA0024.15.78333e-6
MA0025.10.197
MA0027.10.425
MA0028.14.52922e-12
MA0029.10.397
MA0030.10.00231
MA0031.10.305
MA0035.20.425
MA0038.10.0927
MA0039.20.185
MA0040.10.395
MA0041.10.638
MA0042.10.743
MA0043.11.11545e-6
MA0046.10.944
MA0047.20.0626
MA0048.10.0219
MA0050.10.599
MA0051.10.555
MA0052.10.566
MA0055.15.44567e-6
MA0057.10.543
MA0058.14.60377e-5
MA0059.19.83233e-5
MA0060.10.0129
MA0061.10.102
MA0062.27.19352e-11
MA0065.20.0767
MA0066.10.626
MA0067.10.296
MA0068.10.141
MA0069.10.136
MA0070.10.497
MA0071.10.0294
MA0072.10.2
MA0073.10.747
MA0074.10.855
MA0076.12.8652e-14
MA0077.10.146
MA0078.10.0238
MA0079.20.0595
MA0080.23.98275e-7
MA0081.10.492
MA0083.14.84731e-4
MA0084.10.641
MA0087.10.286
MA0088.19.80074e-6
MA0090.10.176
MA0091.10.0118
MA0092.10.406
MA0093.16.0757e-4
MA0099.23.05001e-5
MA0100.10.146
MA0101.10.412
MA0102.20.284
MA0103.10.134
MA0104.24.10164e-6
MA0105.10.195
MA0106.10.15
MA0107.10.142
MA0108.22.99188e-7
MA0111.10.902
MA0112.20.717
MA0113.10.973
MA0114.10.0937
MA0115.10.00792
MA0116.10.997
MA0117.10.477
MA0119.10.693
MA0122.10.206
MA0124.10.592
MA0125.10.364
MA0131.10.0734
MA0135.10.722
MA0136.10.339
MA0137.20.313
MA0138.20.137
MA0139.10.226
MA0140.10.898
MA0141.10.102
MA0142.10.907
MA0143.10.011
MA0144.10.747
MA0145.10.539
MA0146.10.42
MA0147.11.10942e-6
MA0148.10.0171
MA0149.10.0317
MA0150.10.283
MA0152.10.713
MA0153.10.702
MA0154.10.21
MA0155.10.0199
MA0156.10.00362
MA0157.10.853
MA0159.10.116
MA0160.10.14
MA0162.10.598
MA0163.10.171
MA0164.10.611
MA0258.10.556
MA0259.10.00492



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11288

Novel motifP-value
10.256
100.115
1000.0552
1010.285
1020.643
1030.251
1040.664
1050.698
1066.21234e-4
1070.00433
1080.324
1090.0429
110.654
1100.421
1110.406
1120.0783
1130.0304
1140.721
1150.297
1160.762
1170.129
1180.632
1190.607
120.512
1200.98
1210.942
1220.198
1230.621
1240.775
1250.642
1260.894
1270.902
1282.78366e-4
1290.654
139.55915e-5
1300.84
1310.312
1320.525
1330.00154
1340.586
1350.0687
1360.088
1370.185
1380.913
1390.92
140.581
1400.0716
1410.811
1420.346
1430.0114
1440.147
1450.0353
1460.922
1470.579
1480.871
1490.536
150.952
1500.962
1510.765
1520.04
1530.465
1540.329
1550.671
1560.412
1570.675
1580.555
1590.111
160.485
1600.407
1610.596
1620.966
1630.527
1640.0232
1650.681
1660.066
1670.0594
1680.847
1690.671
170.54
180.645
190.321
20.116
200.0391
210.641
220.661
230.00438
240.175
250.404
260.698
270.235
280.816
290.0194
30.791
300.277
310.416
320.165
330.0801
340.191
350.871
360.0379
370.753
380.577
390.318
40.511
400.105
410.085
420.326
430.248
440.46
450.109
460.398
470.486
480.751
490.584
50.399
500.994
510.343
520.045
530.437
540.511
550.197
560.573
570.419
580.917
590.146
60.316
600.186
610.0463
620.842
630.883
640.924
650.274
660.164
670.854
680.668
690.214
70.0831
700.481
710.141
720.677
730.738
740.137
750.0449
760.274
770.502
780.361
790.0708
80.863
800.497
810.601
820.259
830.821
840.312
850.0193
860.568
870.34
880.983
890.538
90.208
900.369
910.00135
920.181
930.941
940.961
950.23
960.457
970.774
980.967
990.517



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11288


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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