FFCP PHASE1:Hg19::chr1:1167346..1167392,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:1167346..1167392,-
|short_description=p1@SDF4
|description=CAGE_peak_1_at_SDF4_5end
|association_with_transcript=0bp_to_ENST00000360001,ENST00000459994,ENS...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51150 | |EntrezGene=51150 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24188 | |HGNC=24188 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BRK5 | |UniProt=Q9BRK5 | ||
|association_with_transcript=0bp_to_ENST00000360001,ENST00000459994,ENST00000545427_5end | |||
|cluster_id=chr1:1167346..1167392,- | |||
|description=CAGE_peak_1_at_SDF4_5end | |||
|id=chr1:1167346..1167392,- | |||
|ontology_enrichment_celltype=CL:0000222!8.51e-16!119;CL:0000055!4.52e-12!180;CL:0000192!1.52e-09!42;CL:0000514!1.52e-09!42;CL:0000183!2.47e-09!59;CL:0002371!1.41e-08!591;CL:0000680!1.97e-08!57;CL:0000056!1.97e-08!57;CL:0000355!1.97e-08!57;CL:0000359!5.45e-08!32;CL:0000187!7.66e-08!54;CL:0000213!2.78e-07!57;CL:0000215!2.78e-07!57;CL:0000144!2.89e-07!625;CL:0000220!4.39e-07!246;CL:0002078!4.58e-07!44;CL:0000136!5.83e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.09e-07;32!CL:0000192;2.60e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.88e-16,121;CL:0000192,1.41e-09,43;CL:0000514,1.41e-09,43;CL:0000680,1.72e-08,58;CL:0000056,1.72e-08,58;CL:0000355,1.72e-08,58;CL:0000359,5.45e-08,32;CL:0000187,6.68e-08,55;CL:0000213,1.62e-07,58;CL:0000215,1.62e-07,58;CL:0002078,2.61e-07,45;CL:0000057,4.40e-07,76;CL:0000136,5.83e-07,15;CL:0000115,8.26e-07,36;CL:0002321,8.60e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;2.60e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!7.17e-20!118;UBERON:0000926!5.88e-17!448;UBERON:0004120!5.88e-17!448;UBERON:0006603!5.88e-17!448;UBERON:0004872!4.99e-16!84;UBERON:0002049!2.50e-14!79;UBERON:0007798!2.50e-14!79;UBERON:0005256!2.54e-14!143;UBERON:0002100!6.22e-14!216;UBERON:0000055!6.48e-14!69;UBERON:0001981!2.19e-13!60;UBERON:0007500!2.19e-13!60;UBERON:0004537!2.19e-13!60;UBERON:0006965!2.19e-13!60;UBERON:0000490!9.37e-12!138;UBERON:0001637!1.13e-11!42;UBERON:0003509!1.13e-11!42;UBERON:0004572!1.13e-11!42;UBERON:0001009!2.10e-11!113;UBERON:0003104!6.74e-11!238;UBERON:0009142!6.74e-11!238;UBERON:0004535!7.89e-11!110;UBERON:0009569!2.33e-09!113;UBERON:0004573!4.63e-09!33;UBERON:0004571!4.63e-09!33;UBERON:0002385!9.81e-09!63;UBERON:0001015!9.81e-09!63;UBERON:0000383!9.81e-09!63;UBERON:0004290!1.28e-08!70;UBERON:0000486!1.37e-08!82;UBERON:0001134!1.39e-08!61;UBERON:0002036!1.39e-08!61;UBERON:0003082!1.39e-08!61;UBERON:0002417!1.40e-08!61;UBERON:0000916!1.40e-08!61;UBERON:0000468!1.90e-08!659;UBERON:0000914!5.26e-08!83;UBERON:0002329!5.26e-08!83;UBERON:0003077!5.26e-08!83;UBERON:0003059!5.26e-08!83;UBERON:0007282!5.26e-08!83;UBERON:0009618!5.26e-08!83;UBERON:0007285!5.26e-08!83;UBERON:0003081!1.29e-07!216;UBERON:0000467!1.53e-07!625;UBERON:0000480!1.92e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;6.97e-09;42!UBERON:0003509;6.97e-09;42!UBERON:0004572;6.97e-09;42!UBERON:0004573;2.79e-08;33!UBERON:0004571;2.79e-08;33!UBERON:0003914;8.78e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,8.39e-20,117;UBERON:0003104,5.61e-16,160;UBERON:0009142,5.61e-16,160;UBERON:0004872,1.60e-15,83;UBERON:0005256,2.59e-14,122;UBERON:0002100,2.73e-14,199;UBERON:0002049,7.77e-14,78;UBERON:0007798,7.77e-14,78;UBERON:0000055,2.07e-13,68;UBERON:0007500,7.19e-13,59;UBERON:0001981,7.19e-13,59;UBERON:0004537,7.19e-13,59;UBERON:0006965,7.19e-13,59;UBERON:0000490,4.23e-12,148;UBERON:0000926,4.88e-12,315;UBERON:0004120,4.88e-12,315;UBERON:0006603,4.88e-12,315;UBERON:0001637,1.13e-11,42;UBERON:0003509,1.13e-11,42;UBERON:0004572,1.13e-11,42;UBERON:0001009,5.32e-11,112;UBERON:0007503,8.98e-11,78;UBERON:0004535,1.97e-10,109;UBERON:0004573,4.63e-09,33;UBERON:0004571,4.63e-09,33;UBERON:0009569,5.51e-09,112;UBERON:0002385,8.51e-09,64;UBERON:0001015,8.51e-09,64;UBERON:0000383,8.51e-09,64;UBERON:0007524,9.53e-09,73;UBERON:0002329,1.10e-08,71;UBERON:0003059,1.10e-08,71;UBERON:0007282,1.10e-08,71;UBERON:0004290,1.10e-08,71;UBERON:0009618,1.10e-08,71;UBERON:0000486,1.17e-08,83;UBERON:0001134,1.21e-08,62;UBERON:0002036,1.21e-08,62;UBERON:0003082,1.21e-08,62;UBERON:0002417,1.61e-08,60;UBERON:0000916,1.61e-08,60;UBERON:0003077,2.46e-08,72;UBERON:0007285,2.46e-08,72;UBERON:0003081,4.56e-07,203 | |||
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07233 | ||
|short_description=p1@SDF4 | |||
}} | }} |
Latest revision as of 08:35, 16 September 2015
Short description: | p1@SDF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SDF4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000360001, ENST00000459994, ENST00000545427_5end |
EntrezGene: | SDF4 |
HGNC: | 24188 |
UniProt: | Q9BRK5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.88e-16 | 121 |
smooth muscle cell | 1.41e-09 | 43 |
smooth muscle myoblast | 1.41e-09 | 43 |
muscle precursor cell | 1.72e-08 | 58 |
myoblast | 1.72e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.72e-08 | 58 |
vascular associated smooth muscle cell | 5.45e-08 | 32 |
muscle cell | 6.68e-08 | 55 |
lining cell | 1.62e-07 | 58 |
barrier cell | 1.62e-07 | 58 |
meso-epithelial cell | 2.61e-07 | 45 |
fibroblast | 4.40e-07 | 76 |
fat cell | 5.83e-07 | 15 |
endothelial cell | 8.26e-07 | 36 |
embryonic cell | 8.60e-07 | 250 |