FFCP PHASE1:Hg19::chr1:154377839..154377921,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:154377839..154377921,+
|short_description=p1@IL6R
|description=CAGE_peak_1_at_IL6R_5end
|association_with_transcript=140bp_to_ENST00000344086_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3570 | |EntrezGene=3570 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6019 | |HGNC=6019 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=140bp_to_ENST00000344086_5end | |||
|cluster_id=chr1:154377839..154377921,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_IL6R_5end | |||
|id=chr1:154377839..154377921,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.07e-35!76;CL:0000557!4.98e-32!71;CL:0000763!5.97e-32!112;CL:0000049!5.97e-32!112;CL:0002009!1.68e-30!65;CL:0002194!2.25e-29!63;CL:0000576!2.25e-29!63;CL:0000040!2.25e-29!63;CL:0000559!2.25e-29!63;CL:0000839!4.46e-28!70;CL:0002057!8.64e-27!42;CL:0000860!3.67e-25!45;CL:0000738!8.22e-18!140;CL:0000037!1.11e-17!172;CL:0000566!1.11e-17!172;CL:0000988!5.09e-17!182;CL:0002032!3.52e-16!165;CL:0000837!3.52e-16!165;CL:0002031!5.84e-12!124;CL:0002087!1.28e-11!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.76e-21;33!CL:0002057;1.76e-21;33!CL:0000473;2.29e-20;39!CL:0000234;2.29e-20;39!CL:0000576;4.85e-20;48!CL:0000766;1.17e-16;69!CL:0000763;4.29e-11;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.01e-39,72;CL:0000763,1.46e-36,108;CL:0000049,1.46e-36,108;CL:0000557,5.11e-36,67;CL:0002009,5.85e-35,61;CL:0002194,9.09e-34,59;CL:0000576,9.09e-34,59;CL:0000040,9.09e-34,59;CL:0000559,9.09e-34,59;CL:0000839,9.20e-32,66;CL:0000473,1.15e-30,48;CL:0000234,1.15e-30,48;CL:0000860,6.60e-28,42;CL:0002057,6.60e-28,42;CL:0000037,1.05e-21,168;CL:0000738,3.57e-21,136;CL:0000988,6.15e-21,177;CL:0002032,6.67e-20,161;CL:0000837,6.67e-20,161;CL:0002031,1.94e-14,120;CL:0002087,2.31e-14,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.81e-20;42!CL:0000049;2.41e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.88e-36!102;UBERON:0003061!2.88e-36!102;UBERON:0002193!5.98e-34!112;UBERON:0002371!3.39e-30!80;UBERON:0001474!2.81e-27!86;UBERON:0002405!5.15e-23!115;UBERON:0004765!1.50e-22!101;UBERON:0001434!1.50e-22!101;UBERON:0007023!6.19e-16!115;UBERON:0000062!4.54e-10!511;UBERON:0003081!1.10e-09!216;UBERON:0000178!7.44e-08!15;UBERON:0000179!7.44e-08!15;UBERON:0000463!7.44e-08!15;UBERON:0002204!2.58e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.93e-08;15!UBERON:0000179;4.93e-08;15!UBERON:0000463;4.93e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.82e-40,98;UBERON:0003061,1.82e-40,98;UBERON:0002193,3.51e-38,108;UBERON:0002371,5.80e-34,76;UBERON:0002405,8.99e-31,93;UBERON:0001474,1.92e-30,82;UBERON:0004765,4.08e-30,90;UBERON:0001434,2.05e-25,100;UBERON:0007023,2.26e-16,114;UBERON:0003081,5.31e-10,203;UBERON:0000178,3.92e-08,15;UBERON:0000179,3.92e-08,15;UBERON:0000463,3.92e-08,15;UBERON:0002204,4.01e-07,167 | |||
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| ||
|short_description=p1@IL6R | |||
}} | }} |
Latest revision as of 09:11, 17 September 2015
Short description: | p1@IL6R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IL6R_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 140bp_to_ENST00000344086_5end |
EntrezGene: | IL6R |
HGNC: | 6019 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.01e-39 | 72 |
myeloid cell | 1.46e-36 | 108 |
common myeloid progenitor | 1.46e-36 | 108 |
granulocyte monocyte progenitor cell | 5.11e-36 | 67 |
macrophage dendritic cell progenitor | 5.85e-35 | 61 |
monopoietic cell | 9.09e-34 | 59 |
monocyte | 9.09e-34 | 59 |
monoblast | 9.09e-34 | 59 |
promonocyte | 9.09e-34 | 59 |
myeloid lineage restricted progenitor cell | 9.20e-32 | 66 |
defensive cell | 1.15e-30 | 48 |
phagocyte | 1.15e-30 | 48 |
classical monocyte | 6.60e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.60e-28 | 42 |
hematopoietic stem cell | 1.05e-21 | 168 |
leukocyte | 3.57e-21 | 136 |
hematopoietic cell | 6.15e-21 | 177 |
hematopoietic oligopotent progenitor cell | 6.67e-20 | 161 |
hematopoietic multipotent progenitor cell | 6.67e-20 | 161 |
hematopoietic lineage restricted progenitor cell | 1.94e-14 | 120 |
nongranular leukocyte | 2.31e-14 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.82e-40 | 98 |
blood island | 1.82e-40 | 98 |
hemolymphoid system | 3.51e-38 | 108 |
bone marrow | 5.80e-34 | 76 |
immune system | 8.99e-31 | 93 |
bone element | 1.92e-30 | 82 |
skeletal element | 4.08e-30 | 90 |
skeletal system | 2.05e-25 | 100 |
adult organism | 2.26e-16 | 114 |
lateral plate mesoderm | 5.31e-10 | 203 |
blood | 3.92e-08 | 15 |
haemolymphatic fluid | 3.92e-08 | 15 |
organism substance | 3.92e-08 | 15 |
musculoskeletal system | 4.01e-07 | 167 |