FFCP PHASE1:Hg19::chr3:108672617..108672636,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9626 | |EntrezGene=9626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4680 | |HGNC=4680 | ||
|TSSclassifier=strong | |||
|UniProt=C9J7M7 | |UniProt=C9J7M7 | ||
|association_with_transcript=-4bp_to_ENST00000471108_5end | |association_with_transcript=-4bp_to_ENST00000471108_5end | ||
|cluster_id=chr3:108672617..108672636,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_3_at_GUCA1C_5end | |description=CAGE_peak_3_at_GUCA1C_5end | ||
|id=chr3:108672617..108672636,- | |id=chr3:108672617..108672636,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.12e-17;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!4.49e-30!2;UBERON:0002757!4.49e-30!2;UBERON:0010134!4.49e-30!2;UBERON:0002784!4.49e-30!2;UBERON:0005408!4.49e-30!2;UBERON:0001899!4.49e-30!2;UBERON:0003056!7.54e-22!61;UBERON:0002780!7.04e-21!41;UBERON:0001890!7.04e-21!41;UBERON:0006240!7.04e-21!41;UBERON:0003080!2.22e-20!42;UBERON:0003075!1.35e-18!86;UBERON:0007284!1.35e-18!86;UBERON:0005743!2.26e-18!86;UBERON:0002346!9.89e-18!90;UBERON:0000073!1.45e-16!94;UBERON:0001016!1.45e-16!94;UBERON:0007023!1.60e-16!115;UBERON:0001017!7.48e-16!82;UBERON:0002702!9.99e-16!1;UBERON:0003296!1.44e-15!4;UBERON:0010133!1.44e-15!4;UBERON:0002038!1.78e-15!1;UBERON:0009661!1.78e-15!1;UBERON:0000955!2.71e-15!69;UBERON:0006238!2.71e-15!69;UBERON:0002619!2.91e-15!22;UBERON:0001049!6.06e-15!57;UBERON:0005068!6.06e-15!57;UBERON:0006241!6.06e-15!57;UBERON:0007135!6.06e-15!57;UBERON:0002791!1.28e-14!33;UBERON:0002616!2.01e-14!59;UBERON:0002020!3.39e-14!34;UBERON:0003528!3.39e-14!34;UBERON:0001893!3.39e-14!34;UBERON:0000956!1.66e-13!25;UBERON:0000203!1.66e-13!25;UBERON:0000966!2.00e-12!5;UBERON:0005388!2.00e-12!5;UBERON:0001802!2.00e-12!5;UBERON:0000349!3.75e-12!5;UBERON:0001950!5.13e-11!20;UBERON:0001869!1.21e-10!32;UBERON:0000033!2.52e-10!123;UBERON:0000153!8.41e-10!129;UBERON:0007811!8.41e-10!129;UBERON:0001894!2.69e-09!7;UBERON:0006222!2.69e-09!7;UBERON:0004121!8.05e-09!169;UBERON:0000924!1.36e-08!173;UBERON:0006601!1.36e-08!173;UBERON:0001870!1.61e-08!2;UBERON:0002360!1.86e-08!2;UBERON:0000094!1.86e-08!2;UBERON:0007645!1.86e-08!2;UBERON:0002950!2.15e-08!2;UBERON:0001891!2.15e-08!2;UBERON:0009616!2.15e-08!2;UBERON:0001876!2.48e-08!2;UBERON:0001954!2.67e-08!2;UBERON:0003022!2.67e-08!2;UBERON:0002421!2.67e-08!2;UBERON:0002600!2.67e-08!2;UBERON:0001255!2.87e-08!2;UBERON:0001556!2.87e-08!2;UBERON:0002420!3.45e-07!9;UBERON:0007245!3.45e-07!9;UBERON:0010009!3.45e-07!9;UBERON:0010011!3.45e-07!9;UBERON:0000454!3.45e-07!9;UBERON:0000970!4.71e-07!20;UBERON:0002104!9.68e-07!21 | |ontology_enrichment_uberon=UBERON:0001905!4.49e-30!2;UBERON:0002757!4.49e-30!2;UBERON:0010134!4.49e-30!2;UBERON:0002784!4.49e-30!2;UBERON:0005408!4.49e-30!2;UBERON:0001899!4.49e-30!2;UBERON:0003056!7.54e-22!61;UBERON:0002780!7.04e-21!41;UBERON:0001890!7.04e-21!41;UBERON:0006240!7.04e-21!41;UBERON:0003080!2.22e-20!42;UBERON:0003075!1.35e-18!86;UBERON:0007284!1.35e-18!86;UBERON:0005743!2.26e-18!86;UBERON:0002346!9.89e-18!90;UBERON:0000073!1.45e-16!94;UBERON:0001016!1.45e-16!94;UBERON:0007023!1.60e-16!115;UBERON:0001017!7.48e-16!82;UBERON:0002702!9.99e-16!1;UBERON:0003296!1.44e-15!4;UBERON:0010133!1.44e-15!4;UBERON:0002038!1.78e-15!1;UBERON:0009661!1.78e-15!1;UBERON:0000955!2.71e-15!69;UBERON:0006238!2.71e-15!69;UBERON:0002619!2.91e-15!22;UBERON:0001049!6.06e-15!57;UBERON:0005068!6.06e-15!57;UBERON:0006241!6.06e-15!57;UBERON:0007135!6.06e-15!57;UBERON:0002791!1.28e-14!33;UBERON:0002616!2.01e-14!59;UBERON:0002020!3.39e-14!34;UBERON:0003528!3.39e-14!34;UBERON:0001893!3.39e-14!34;UBERON:0000956!1.66e-13!25;UBERON:0000203!1.66e-13!25;UBERON:0000966!2.00e-12!5;UBERON:0005388!2.00e-12!5;UBERON:0001802!2.00e-12!5;UBERON:0000349!3.75e-12!5;UBERON:0001950!5.13e-11!20;UBERON:0001869!1.21e-10!32;UBERON:0000033!2.52e-10!123;UBERON:0000153!8.41e-10!129;UBERON:0007811!8.41e-10!129;UBERON:0001894!2.69e-09!7;UBERON:0006222!2.69e-09!7;UBERON:0004121!8.05e-09!169;UBERON:0000924!1.36e-08!173;UBERON:0006601!1.36e-08!173;UBERON:0001870!1.61e-08!2;UBERON:0002360!1.86e-08!2;UBERON:0000094!1.86e-08!2;UBERON:0007645!1.86e-08!2;UBERON:0002950!2.15e-08!2;UBERON:0001891!2.15e-08!2;UBERON:0009616!2.15e-08!2;UBERON:0001876!2.48e-08!2;UBERON:0001954!2.67e-08!2;UBERON:0003022!2.67e-08!2;UBERON:0002421!2.67e-08!2;UBERON:0002600!2.67e-08!2;UBERON:0001255!2.87e-08!2;UBERON:0001556!2.87e-08!2;UBERON:0002420!3.45e-07!9;UBERON:0007245!3.45e-07!9;UBERON:0010009!3.45e-07!9;UBERON:0010011!3.45e-07!9;UBERON:0000454!3.45e-07!9;UBERON:0000970!4.71e-07!20;UBERON:0002104!9.68e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;5.68e-99;2!UBERON:0002757;5.68e-99;2!UBERON:0010134;5.68e-99;2!UBERON:0005408;5.68e-99;2!UBERON:0001899;5.68e-99;2!UBERON:0003296;3.11e-50;4!UBERON:0010133;3.11e-50;4!UBERON:0002784;3.11e-50;4!UBERON:0001894;2.74e-29;7!UBERON:0000966;3.60e-11;5!UBERON:0005388;3.60e-11;5!UBERON:0001802;3.60e-11;5!UBERON:0000970;6.30e-11;20!UBERON:0002104;1.86e-10;21!UBERON:0000020;1.22e-09;23!UBERON:0001032;2.78e-09;24!UBERON:0004456;2.78e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.68e-99,2;UBERON:0002757,5.68e-99,2;UBERON:0010134,5.68e-99,2;UBERON:0005408,5.68e-99,2;UBERON:0001899,5.68e-99,2;UBERON:0003296,3.11e-50,4;UBERON:0010133,3.11e-50,4;UBERON:0002784,3.11e-50,4;UBERON:0001894,2.74e-29,7;UBERON:0006222,2.74e-29,7;UBERON:0000970,1.86e-10,21;UBERON:0002104,1.86e-10,21;UBERON:0000966,1.57e-09,6;UBERON:0005388,1.57e-09,6;UBERON:0001802,1.57e-09,6;UBERON:0000020,2.78e-09,24;UBERON:0001032,2.78e-09,24;UBERON:0004456,2.78e-09,24;UBERON:0003056,4.39e-08,61;UBERON:0002368,9.98e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2990370390266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,43.3918487061412,111.64619577665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64530375300947,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2990370390266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,43.3918487061412,111.64619577665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64530375300947,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@GUCA1C | |short_description=p3@GUCA1C | ||
}} | }} |
Latest revision as of 11:38, 19 September 2015
Short description: | p3@GUCA1C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GUCA1C_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -4bp_to_ENST00000471108_5end |
EntrezGene: | GUCA1C |
HGNC: | 4680 |
UniProt: | C9J7M7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 5.68e-99 | 2 |
regional part of epithalamus | 5.68e-99 | 2 |
secretory circumventricular organ | 5.68e-99 | 2 |
circumventricular organ | 5.68e-99 | 2 |
epithalamus | 5.68e-99 | 2 |
gland of diencephalon | 3.11e-50 | 4 |
neuroendocrine gland | 3.11e-50 | 4 |
regional part of diencephalon | 3.11e-50 | 4 |
diencephalon | 2.74e-29 | 7 |
future diencephalon | 2.74e-29 | 7 |
eye | 1.86e-10 | 21 |
visual system | 1.86e-10 | 21 |
retina | 1.57e-09 | 6 |
photoreceptor array | 1.57e-09 | 6 |
posterior segment of eyeball | 1.57e-09 | 6 |
sense organ | 2.78e-09 | 24 |
sensory system | 2.78e-09 | 24 |
entire sense organ system | 2.78e-09 | 24 |
pre-chordal neural plate | 4.39e-08 | 61 |
endocrine gland | 9.98e-07 | 35 |