FFCP PHASE1:Hg19::chr1:17634689..17634696,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:17634689..17634696,+
|short_description=p1@PADI4
|description=CAGE_peak_1_at_PADI4_5end
|association_with_transcript=0bp_to_ENST00000358829,ENST00000375448...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23569 | |EntrezGene=23569 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18368 | |HGNC=18368 | ||
|TSSclassifier=strong | |||
|UniProt=E7EVX4,Q9UM07,B1AQ67,B2RBW0 | |UniProt=E7EVX4,Q9UM07,B1AQ67,B2RBW0 | ||
|association_with_transcript=0bp_to_ENST00000358829,ENST00000375448,ENST00000375453,NM_012387,uc001baj.2,uc009vpc.2_5end | |||
|cluster_id=chr1:17634689..17634696,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_PADI4_5end | |||
|id=chr1:17634689..17634696,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.04e-40!172;CL:0000566!1.04e-40!172;CL:0002057!2.53e-40!42;CL:0002032!5.28e-38!165;CL:0000837!5.28e-38!165;CL:0000860!2.28e-36!45;CL:0000988!2.49e-36!182;CL:0000763!2.58e-34!112;CL:0000049!2.58e-34!112;CL:0000738!4.60e-32!140;CL:0000766!1.06e-30!76;CL:0002087!9.99e-29!119;CL:0002031!1.06e-26!124;CL:0000839!1.01e-24!70;CL:0002194!1.63e-24!63;CL:0000576!1.63e-24!63;CL:0000040!1.63e-24!63;CL:0000559!1.63e-24!63;CL:0002009!3.27e-23!65;CL:0000557!8.17e-23!71;CL:0000094!4.90e-10!8;CL:0002393!3.04e-09!9;CL:0002397!3.04e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.55e-46;33!CL:0002057;4.55e-46;33!CL:0000576;2.93e-33;48!CL:0000473;2.80e-31;39!CL:0000234;2.80e-31;39!CL:0000766;1.36e-23;69!CL:0000763;5.21e-18;100!CL:0000094;4.64e-15;8!CL:0002087;1.55e-12;104!CL:0000081;2.17e-10;11!CL:0002393;2.47e-10;6!CL:0002397;2.47e-10;6!CL:0000738;8.76e-09;136!CL:0000988;2.42e-08;177!CL:0000775;6.57e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.66e-63,42;CL:0002057,1.66e-63,42;CL:0000473,1.05e-53,48;CL:0000234,1.05e-53,48;CL:0000763,3.34e-53,108;CL:0000049,3.34e-53,108;CL:0000766,1.03e-49,72;CL:0000037,1.63e-46,168;CL:0002032,2.18e-43,161;CL:0000837,2.18e-43,161;CL:0000988,6.59e-43,177;CL:0002194,5.04e-42,59;CL:0000576,5.04e-42,59;CL:0000040,5.04e-42,59;CL:0000559,5.04e-42,59;CL:0002009,3.41e-40,61;CL:0000839,6.82e-40,66;CL:0000557,3.69e-37,67;CL:0000738,7.14e-36,136;CL:0002087,5.74e-32,115;CL:0002031,3.52e-28,120;CL:0000094,4.70e-15,8;CL:0002393,8.57e-14,9;CL:0002397,8.57e-14,9;CL:0000134,1.43e-10,354;CL:0000081,2.19e-10,11;CL:0002320,5.73e-10,361;CL:0000219,6.80e-08,386;CL:0000775,6.57e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.58e-45;42!CL:0000049;2.37e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.55e-29!102;UBERON:0003061!1.55e-29!102;UBERON:0002193!1.04e-25!112;UBERON:0002371!3.02e-19!80;UBERON:0001474!2.41e-17!86;UBERON:0007023!9.90e-16!115;UBERON:0002405!1.09e-15!115;UBERON:0004765!2.25e-13!101;UBERON:0001434!2.25e-13!101;UBERON:0000178!4.96e-10!15;UBERON:0000179!4.96e-10!15;UBERON:0000463!4.96e-10!15;UBERON:0003081!2.36e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.52e-16;15!UBERON:0000179;5.52e-16;15!UBERON:0000463;5.52e-16;15!UBERON:0002390;3.02e-12;32!UBERON:0002193;5.46e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.12e-49,98;UBERON:0003061,2.12e-49,98;UBERON:0002193,1.18e-44,108;UBERON:0002371,1.17e-32,76;UBERON:0002405,3.97e-31,93;UBERON:0001474,3.13e-29,82;UBERON:0004765,2.19e-25,90;UBERON:0001434,1.81e-21,100;UBERON:0003081,2.31e-20,203;UBERON:0000178,5.50e-16,15;UBERON:0000179,5.50e-16,15;UBERON:0000463,5.50e-16,15;UBERON:0002384,3.72e-09,371;UBERON:0002204,5.49e-09,167;UBERON:0000926,1.64e-08,315;UBERON:0004120,1.64e-08,315;UBERON:0006603,1.64e-08,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.0787107813136792,43.6634347302283,41.453574994499,31.2728569098474,0,0,0,0,0,2.05520307534393,48.7515959508052,49.534478525125,59.8950003175751,0.223915474239924,0,0,22.391328772053,18.5159212407517,13.3421233653299,22.08075850604,20.5583944010913,19.8212077372866,17.5492359316512,14.3449995656296,14.8983804829809,38.2667705617647,30.9832648120237,37.9194162464157,27.6716239127629,27.0177088557267,21.7981779911732,26.0171308515267,35.3021929783703,31.327519164153,14.1836059080288,11.5688921420546,11.9342930149154,19.1538097494865,20.9932533135722,21.1759564658495,26.6323585172148,22.4237654920687,21.9360733152168,16.9511860737343,20.6235476153036,14.5572698222807,7.18267973460602,6.80333759888139,12.5795187305026,88.8519472368776,104.072586739164,114.758068901715,4.27519115611873,3.58050018958362,4.38393969035121,1.75996244461323,2.18455444504853,0.889509253863555,2.56038133539904,0.400395987036012,1.72425731986345,0.661044872784862,2.86216126360609,0.569212969109448,1.76171156811282,0,2.64342657158052,5.60508562981536,0.790152254325231,0.393419540227666,0.393010762749165,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95569624297229,0,0,1.80690142893327,0.383959833463255,4.99722906209383,1.89421801635213,0.821127996921047,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.523916301990851,0,0.370784442784429,0,0,0.26591592103773,1.90792499444274,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,64.572404543671,151.234303017847,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0.141775097242386,0,0,1.15014803749563,0.492663237895943,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,1.37921532141349,0,3.33691894327346,0,0,0,0,0,219.459058016524,299.161459204025,285.117873243992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7444828735176,32.7885585244298,17.6100470375683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.28889814968902,3.92153176537351,0,0,0,1.95777922130672,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,1.69458841398202,0,0,0,0,90.8331220525583,65.7587998142443,87.725666824821,30.9701308095126,29.2067213891198,95.9740500565222,73.9843069016217,88.036894568664,0,0,0,0,0,0,0,8.3823336001783,60.8987077020926,6.56188106444037,0.324621940274555,1.68478306868075,0,3.13359791546046,52.6332401889141,18.4528037803748,0,0,14.0529258437808,0,0,0,0,2.34465714482448,0,0,0,3.99686361597384,7.04935025439248,0,0.146508179271894,0,1.5602073798847,0,0.23874448473769,1.18785872333055,0,0,0.140669416410513,0,0,0,0,0,0,0,0.369254416383208,0,0,0,0,0.197286811273867,59.8707730867349,0,0,0.278304294485554,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0.110579259931225,0,0,0,0.139423744278603,0.153900517007594,0,1.38338342632836,0.718061155278177,0,0.31900115973192,0,0,0,2.19772358953035,1.49590513710141,0,0,0.167821586975843,0,0.158936578980379,0,0,0,0,0.995261931078505,0.176915129006678,0.611030144933625,0,0,0,0.404406797884062,1.60515529459758,0,0,0.19566461893209,0,0,0,0,1.5796644907122,0,0,0,0,0.313932918407225,0,0,0.277349346026277,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.677942222341597,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55493176133945,0,0.262887354279314,0,0,1.43574604915363,0.199679000498991,0.858452096273142,6.24880080837243,3.69509098676994,0,0,0,0,0,0,0,0,0.544813624446302,0.160753148465019,0,0,0,0,0,0.670869375198532,0.0788057072991982,1.88836517285993,0,0,0,4.2881719582402,3.97255182219259,0,0,0,0,0,0.574647645245373,0,0,0.58620893471233,13.2506888912221,0.646414781807753,0.26446520348538,0,7.75296524548339,6.94118181690015,7.70301094988363,4.55662960881915,2.97699613087171,0,0,0,0,0,0,0,0,0,0,0.625954653532499,0.573409195690071,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,1.70706767510625,0,0,0,0,3.73246356019784,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0.0691572524642179,0,1.42769420259154,2.06110208852154,0,0,0,0,0,0,0.601682626794058,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0,0,0.127762427639595,0,0,0,0.455324382702595,2.12885688390333,0,0.171488009437418,0.135939465953663,0.0657727735628491,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,4.6392577253528,1.45713297917742,0,0,0,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0.1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| ||
|short_description=p1@PADI4 | |||
}} | }} |
Latest revision as of 20:13, 18 September 2015
Short description: | p1@PADI4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PADI4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000358829, ENST00000375448, ENST00000375453, NM_012387, uc001baj.2, uc009vpc.2_5end |
EntrezGene: | PADI4 |
HGNC: | 18368 |
UniProt: | E7EVX4Q9UM07B1AQ67B2RBW0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.66e-63 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.66e-63 | 42 |
defensive cell | 1.05e-53 | 48 |
phagocyte | 1.05e-53 | 48 |
myeloid cell | 3.34e-53 | 108 |
common myeloid progenitor | 3.34e-53 | 108 |
myeloid leukocyte | 1.03e-49 | 72 |
hematopoietic stem cell | 1.63e-46 | 168 |
hematopoietic oligopotent progenitor cell | 2.18e-43 | 161 |
hematopoietic multipotent progenitor cell | 2.18e-43 | 161 |
hematopoietic cell | 6.59e-43 | 177 |
monopoietic cell | 5.04e-42 | 59 |
monocyte | 5.04e-42 | 59 |
monoblast | 5.04e-42 | 59 |
promonocyte | 5.04e-42 | 59 |
macrophage dendritic cell progenitor | 3.41e-40 | 61 |
myeloid lineage restricted progenitor cell | 6.82e-40 | 66 |
granulocyte monocyte progenitor cell | 3.69e-37 | 67 |
leukocyte | 7.14e-36 | 136 |
nongranular leukocyte | 5.74e-32 | 115 |
hematopoietic lineage restricted progenitor cell | 3.52e-28 | 120 |
granulocyte | 4.70e-15 | 8 |
intermediate monocyte | 8.57e-14 | 9 |
CD14-positive, CD16-positive monocyte | 8.57e-14 | 9 |
mesenchymal cell | 1.43e-10 | 354 |
blood cell | 2.19e-10 | 11 |
connective tissue cell | 5.73e-10 | 361 |
motile cell | 6.80e-08 | 386 |
neutrophil | 6.57e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.12e-49 | 98 |
blood island | 2.12e-49 | 98 |
hemolymphoid system | 1.18e-44 | 108 |
bone marrow | 1.17e-32 | 76 |
immune system | 3.97e-31 | 93 |
bone element | 3.13e-29 | 82 |
skeletal element | 2.19e-25 | 90 |
skeletal system | 1.81e-21 | 100 |
lateral plate mesoderm | 2.31e-20 | 203 |
blood | 5.50e-16 | 15 |
haemolymphatic fluid | 5.50e-16 | 15 |
organism substance | 5.50e-16 | 15 |
connective tissue | 3.72e-09 | 371 |
musculoskeletal system | 5.49e-09 | 167 |
mesoderm | 1.64e-08 | 315 |
mesoderm-derived structure | 1.64e-08 | 315 |
presumptive mesoderm | 1.64e-08 | 315 |