FFCP PHASE1:Hg19::chr1:183208607..183208635,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:183208607..183208635,+
|short_description=p4@LAMC2
|description=CAGE_peak_4_at_LAMC2_5end
|association_with_transcript=0bp_to_ENST00000461729_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3918 | |EntrezGene=3918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |HGNC=6493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000461729_5end | |||
|cluster_id=chr1:183208607..183208635,+ | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_4_at_LAMC2_5end | |||
|id=chr1:183208607..183208635,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.74e-33!254;CL:0002076!3.87e-30!43;CL:0000223!1.18e-20!59;CL:0002368!1.68e-15!13;CL:0002251!5.97e-14!21;CL:0002159!7.50e-13!13;CL:0000076!2.58e-09!62;CL:0000220!2.77e-09!246;CL:0002202!3.23e-09!9;CL:0002632!3.23e-09!9;CL:0002321!4.37e-09!248;CL:0000622!2.00e-08!5;CL:0000244!2.18e-08!4;CL:0000731!2.18e-08!4;CL:0002077!3.33e-07!33;CL:0000154!6.33e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.35e-26;13!CL:0002076;3.97e-24;42!CL:0000244;1.65e-23;4!CL:0000731;1.65e-23;4!CL:0002159;3.09e-19;14!CL:0002621;4.11e-18;3!CL:0002166;6.49e-18;3!CL:0000240;2.37e-15;6!CL:0000311;2.37e-15;6!CL:0000079;2.37e-15;6!CL:0000237;2.37e-15;6!CL:0002327;7.18e-13;4!CL:0002536;6.31e-12;2!CL:0000312;6.66e-11;5!CL:0000362;2.18e-10;9!CL:0002202;6.51e-10;9!CL:0002632;6.51e-10;9!CL:0002231;1.25e-08;3!CL:0000307;2.55e-08;3!CL:0000239;3.76e-08;3!CL:1000615;3.76e-08;3!CL:0002328;3.76e-08;3!CL:0002306;3.76e-08;3!CL:0002251;6.59e-07;20!CL:0002077;7.92e-07;34!CL:0002336;8.02e-07;1!CL:0002261;8.02e-07;1!CL:0002252;8.02e-07;1!CL:0002170;8.02e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,6.95e-27,42;CL:0002368,2.79e-26,13;CL:0000244,1.74e-23,4;CL:0000731,1.74e-23,4;CL:0000066,4.80e-21,253;CL:0002159,2.69e-19,14;CL:0000223,1.37e-18,58;CL:0002621,4.88e-18,3;CL:0002166,5.47e-18,3;CL:0000240,2.33e-15,6;CL:0000311,2.33e-15,6;CL:0000079,2.33e-15,6;CL:0000237,2.33e-15,6;CL:0000036,2.33e-15,6;CL:0000357,2.33e-15,6;CL:0000114,2.33e-15,6;CL:0002327,5.49e-13,4;CL:0002536,5.81e-12,2;CL:0000312,6.33e-11,5;CL:0000362,2.07e-10,9;CL:0002202,7.42e-10,9;CL:0002632,7.42e-10,9;CL:0002231,1.23e-08,3;CL:0000068,3.25e-08,3;CL:0000069,3.25e-08,3;CL:0000307,3.25e-08,3;CL:0000377,3.25e-08,3;CL:0002328,3.63e-08,3;CL:0000239,4.20e-08,3;CL:1000615,4.20e-08,3;CL:0002306,4.20e-08,3;CL:0002321,8.69e-08,250;CL:0002077,2.07e-07,34;CL:0002251,6.85e-07,20;CL:0002252,7.57e-07,1;CL:0002336,8.49e-07,1;CL:0002261,8.49e-07,1;CL:0002170,8.49e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000357;2.37e-15;6!CL:0000114;2.37e-15;6!CL:0000223;1.51e-11;58!CL:0000377;2.55e-08;3 | |||
|ontology_enrichment_disease=DOID:1749!2.81e-13!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.27e-15!169;UBERON:0000925!1.27e-15!169;UBERON:0006595!1.27e-15!169;UBERON:0005631!4.68e-12!14;UBERON:0000158!4.68e-12!14;UBERON:0001004!6.13e-12!72;UBERON:0005910!2.11e-10!6;UBERON:0003124!2.64e-10!7;UBERON:0000161!6.73e-10!35;UBERON:0000166!9.18e-10!21;UBERON:0005911!2.12e-09!82;UBERON:0000365!2.38e-09!5;UBERON:0000065!5.33e-08!53;UBERON:0001007!7.34e-08!155;UBERON:0001555!7.34e-08!155;UBERON:0007026!7.34e-08!155;UBERON:0000165!7.34e-08!28;UBERON:0000930!7.34e-08!28;UBERON:0003729!1.61e-07!5;UBERON:0001987!7.90e-07!4;UBERON:0004340!7.90e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;6.93e-23;12!UBERON:0000365;7.56e-19;5!UBERON:0001949;4.11e-18;3!UBERON:0005910;9.83e-16;6!UBERON:0001708;1.43e-13;4!UBERON:0008895;1.43e-13;4!UBERON:0001911;7.18e-13;4!UBERON:0011159;5.92e-11;5!UBERON:0005911;6.85e-09;36!UBERON:0004815;3.76e-08;3!UBERON:0006853;3.76e-08;3!UBERON:0007685;3.76e-08;3!UBERON:0004134;3.76e-08;3!UBERON:0002031;3.76e-08;3!UBERON:0010371;4.25e-08;31!UBERON:0003929;4.94e-08;7!UBERON:0000305;1.64e-07;7!UBERON:0003729;3.21e-07;13!UBERON:0003350;4.45e-07;8!UBERON:0001828;4.45e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,7.92e-19,5;UBERON:0001949,4.88e-18,3;UBERON:0005910,1.02e-15,6;UBERON:0001708,1.26e-13,4;UBERON:0008895,1.26e-13,4;UBERON:0001911,5.49e-13,4;UBERON:0005333,5.49e-13,4;UBERON:0008425,5.49e-13,4;UBERON:0005311,5.49e-13,4;UBERON:0011159,5.35e-11,5;UBERON:0004119,1.14e-09,160;UBERON:0000925,1.14e-09,160;UBERON:0006595,1.14e-09,160;UBERON:0010188,3.06e-09,6;UBERON:0002539,3.06e-09,6;UBERON:0008816,3.06e-09,6;UBERON:0006554,3.27e-08,47;UBERON:0004815,3.63e-08,3;UBERON:0002031,3.63e-08,3;UBERON:0006853,4.20e-08,3;UBERON:0007685,4.20e-08,3;UBERON:0004134,4.20e-08,3;UBERON:0001008,5.20e-08,48;UBERON:0000305,1.70e-07,7;UBERON:0003729,3.42e-07,13;UBERON:0003102,3.95e-07,99;UBERON:0001004,3.98e-07,74;UBERON:0003350,4.73e-07,8;UBERON:0001828,4.73e-07,8 | |||
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| ||
|short_description=p4@LAMC2 | |||
}} | }} |
Latest revision as of 02:24, 19 September 2015
Short description: | p4@LAMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAMC2_5end |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | 0bp_to_ENST00000461729_5end |
EntrezGene: | LAMC2 |
HGNC: | 6493 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
urothelium | 7.92e-19 | 5 |
gingival epithelium | 4.88e-18 | 3 |
transitional epithelium | 1.02e-15 | 6 |
jaw skeleton | 1.26e-13 | 4 |
splanchnocranium | 1.26e-13 | 4 |
mammary gland | 5.49e-13 | 4 |
mammary bud | 5.49e-13 | 4 |
mammary ridge | 5.49e-13 | 4 |
mammary placode | 5.49e-13 | 4 |
primary subdivision of cranial skeletal system | 5.35e-11 | 5 |
endoderm-derived structure | 1.14e-09 | 160 |
endoderm | 1.14e-09 | 160 |
presumptive endoderm | 1.14e-09 | 160 |
protuberance | 3.06e-09 | 6 |
pharyngeal arch | 3.06e-09 | 6 |
embryonic head | 3.06e-09 | 6 |
urinary system structure | 3.27e-08 | 47 |
lower respiratory tract epithelium | 3.63e-08 | 3 |
epithelium of bronchus | 3.63e-08 | 3 |
renal cortex tubule | 4.20e-08 | 3 |
region of nephron tubule | 4.20e-08 | 3 |
proximal tubule | 4.20e-08 | 3 |
renal system | 5.20e-08 | 48 |
amnion | 1.70e-07 | 7 |
mouth mucosa | 3.42e-07 | 13 |
surface structure | 3.95e-07 | 99 |
respiratory system | 3.98e-07 | 74 |
epithelium of mucosa | 4.73e-07 | 8 |
gingiva | 4.73e-07 | 8 |