FFCP PHASE1:Hg19::chr2:171571827..171571853,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389058 | |EntrezGene=389058 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14529 | |HGNC=14529 | ||
|TSSclassifier=strong | |||
|UniProt=Q6BEB4 | |UniProt=Q6BEB4 | ||
|association_with_transcript=-3bp_to_NM_001003845,uc002uge.2_5end | |association_with_transcript=-3bp_to_NM_001003845,uc002uge.2_5end | ||
|cluster_id=chr2:171571827..171571853,+ | |||
|coexpression_cluster_id=C55 | |coexpression_cluster_id=C55 | ||
|description=CAGE_peak_1_at_SP5_5end | |description=CAGE_peak_1_at_SP5_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!1.58e-07!5 | |ontology_enrichment_celltype=CL:0002322!1.58e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.77e-19;5!CL:0000182;5.88e-11;12!CL:0002563;4.89e-09;4!CL:0002253;2.55e-08;2 | |ontology_enrichment_celltype_v019=CL:0002322;4.77e-19;5!CL:0000182;5.88e-11;12!CL:0002563;4.89e-09;4!CL:0002253;2.55e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.88e-19,5;CL:0000182,5.90e-11,12;CL:0000223,2.31e-09,58;CL:0002563,6.69e-09,4;CL:0002253,3.87e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.04e-12;11!UBERON:0009497;6.14e-10;13!UBERON:0001041;1.39e-08;30!UBERON:0003104;3.89e-08;31 | |ontology_enrichment_development_v019=UBERON:0004161;7.04e-12;11!UBERON:0009497;6.14e-10;13!UBERON:0001041;1.39e-08;30!UBERON:0003104;3.89e-08;31 | ||
|ontology_enrichment_disease=DOID:305!2.50e-14!106;DOID:0050687!4.46e-10!143;DOID:162!1.62e-07!235;DOID:14566!5.51e-07!239;DOID:3119!9.54e-07!14 | |ontology_enrichment_disease=DOID:305!2.50e-14!106;DOID:0050687!4.46e-10!143;DOID:162!1.62e-07!235;DOID:14566!5.51e-07!239;DOID:3119!9.54e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3119;1.02e-08;14!DOID:3493;5.53e-08;2 | |ontology_enrichment_disease_v019=DOID:3119;1.02e-08;14!DOID:3493;5.53e-08;2 | ||
|ontology_enrichment_disease_v019_2=DOID:305,3.86e-11,106;DOID:0050687,1.01e-08,143;DOID:3119,1.48e-08,14;DOID:3493,4.31e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.52e-11!115;UBERON:0004921!2.46e-11!129;UBERON:0004185!2.46e-11!129;UBERON:0001007!2.03e-10!155;UBERON:0001555!2.03e-10!155;UBERON:0007026!2.03e-10!155;UBERON:0000077!8.86e-10!130;UBERON:0004119!9.77e-10!169;UBERON:0000925!9.77e-10!169;UBERON:0006595!9.77e-10!169;UBERON:0005911!5.70e-09!82;UBERON:0005409!1.06e-07!35 | |ontology_enrichment_uberon=UBERON:0007023!1.52e-11!115;UBERON:0004921!2.46e-11!129;UBERON:0004185!2.46e-11!129;UBERON:0001007!2.03e-10!155;UBERON:0001555!2.03e-10!155;UBERON:0007026!2.03e-10!155;UBERON:0000077!8.86e-10!130;UBERON:0004119!9.77e-10!169;UBERON:0000925!9.77e-10!169;UBERON:0006595!9.77e-10!169;UBERON:0005911!5.70e-09!82;UBERON:0005409!1.06e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;5.04e-11;22!UBERON:0001242;4.89e-09;4!UBERON:0001262;4.89e-09;4!UBERON:0004786;4.89e-09;4!UBERON:0004808;4.89e-09;4!UBERON:0001277;4.89e-09;4!UBERON:0002107;9.08e-09;19!UBERON:0006925;9.08e-09;19!UBERON:0004921;2.54e-08;33!UBERON:0002423;2.58e-08;25!UBERON:0000922;7.18e-08;49!UBERON:0000945;6.30e-07;5!UBERON:0010039;6.30e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0005409;5.04e-11;22!UBERON:0001242;4.89e-09;4!UBERON:0001262;4.89e-09;4!UBERON:0004786;4.89e-09;4!UBERON:0004808;4.89e-09;4!UBERON:0001277;4.89e-09;4!UBERON:0002107;9.08e-09;19!UBERON:0006925;9.08e-09;19!UBERON:0004921;2.54e-08;33!UBERON:0002423;2.58e-08;25!UBERON:0000922;7.18e-08;49!UBERON:0000945;6.30e-07;5!UBERON:0010039;6.30e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007499,1.49e-10,25;UBERON:0009856,4.43e-10,26;UBERON:0008835,1.22e-09,22;UBERON:0003894,1.22e-09,22;UBERON:0005409,1.77e-09,25;UBERON:0004921,2.54e-09,118;UBERON:0009854,3.69e-09,23;UBERON:0005911,6.64e-09,82;UBERON:0001242,6.69e-09,4;UBERON:0001262,6.69e-09,4;UBERON:0004786,6.69e-09,4;UBERON:0004808,6.69e-09,4;UBERON:0001277,6.69e-09,4;UBERON:0002107,8.94e-09,19;UBERON:0006925,8.94e-09,19;UBERON:0008836,8.94e-09,19;UBERON:0003929,1.07e-08,54;UBERON:0009497,2.57e-08,25;UBERON:0000015,2.57e-08,25;UBERON:0002423,2.57e-08,25;UBERON:0006235,2.57e-08,25;UBERON:0004161,2.57e-08,25;UBERON:0001007,1.77e-07,145;UBERON:0001555,1.77e-07,145;UBERON:0007026,1.77e-07,145;UBERON:0004119,4.95e-07,160;UBERON:0000925,4.95e-07,160;UBERON:0006595,4.95e-07,160 | |||
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| ||
|short_description=p1@SP5 | |short_description=p1@SP5 | ||
}} | }} |
Latest revision as of 03:16, 18 September 2015
Short description: | p1@SP5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SP5_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | -3bp_to_NM_001003845, uc002uge.2_5end |
EntrezGene: | SP5 |
HGNC: | 14529 |
UniProt: | Q6BEB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.88e-19 | 5 |
hepatocyte | 5.90e-11 | 12 |
endodermal cell | 2.31e-09 | 58 |
intestinal epithelial cell | 6.69e-09 | 4 |
epithelial cell of large intestine | 3.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelial sac | 1.49e-10 | 25 |
sac | 4.43e-10 | 26 |
hepatic diverticulum | 1.22e-09 | 22 |
liver primordium | 1.22e-09 | 22 |
gastrointestinal system | 1.77e-09 | 25 |
subdivision of digestive tract | 2.54e-09 | 118 |
digestive tract diverticulum | 3.69e-09 | 23 |
endo-epithelium | 6.64e-09 | 82 |
intestinal mucosa | 6.69e-09 | 4 |
wall of intestine | 6.69e-09 | 4 |
gastrointestinal system mucosa | 6.69e-09 | 4 |
gastrointestinal system epithelium | 6.69e-09 | 4 |
intestinal epithelium | 6.69e-09 | 4 |
liver | 8.94e-09 | 19 |
digestive gland | 8.94e-09 | 19 |
liver bud | 8.94e-09 | 19 |
gut epithelium | 1.07e-08 | 54 |
epithelium of foregut-midgut junction | 2.57e-08 | 25 |
anatomical boundary | 2.57e-08 | 25 |
hepatobiliary system | 2.57e-08 | 25 |
foregut-midgut junction | 2.57e-08 | 25 |
septum transversum | 2.57e-08 | 25 |
digestive system | 1.77e-07 | 145 |
digestive tract | 1.77e-07 | 145 |
primitive gut | 1.77e-07 | 145 |
endoderm-derived structure | 4.95e-07 | 160 |
endoderm | 4.95e-07 | 160 |
presumptive endoderm | 4.95e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.86e-11 | 106 |
cell type cancer | 1.01e-08 | 143 |
gastrointestinal system cancer | 1.48e-08 | 14 |
signet ring cell adenocarcinoma | 4.31e-08 | 2 |