FFCP PHASE1:Hg19::chr19:39215203..39215210,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:39215203..39215210,+ | |||
|coexpression_cluster_id=C3367 | |coexpression_cluster_id=C3367 | ||
|description=CAGE_peak_at_chr19:39215203..39215210,+ | |description=CAGE_peak_at_chr19:39215203..39215210,+ | ||
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|ontology_enrichment_celltype=CL:0000548!5.02e-18!679;CL:0000004!5.02e-18!679;CL:0000255!5.02e-18!679;CL:0000012!1.81e-17!682;CL:0000003!5.79e-16!722;CL:0002371!9.50e-13!591;CL:0000055!1.90e-12!180;CL:0000144!3.07e-12!625;CL:0000220!2.53e-11!246;CL:0002321!6.26e-11!248;CL:0000066!6.79e-10!254;CL:0000222!1.03e-08!119;CL:0000680!8.54e-08!57;CL:0000056!8.54e-08!57;CL:0000355!8.54e-08!57;CL:0000192!9.93e-08!42;CL:0000514!9.93e-08!42;CL:0000183!1.28e-07!59;CL:0000187!2.25e-07!54 | |ontology_enrichment_celltype=CL:0000548!5.02e-18!679;CL:0000004!5.02e-18!679;CL:0000255!5.02e-18!679;CL:0000012!1.81e-17!682;CL:0000003!5.79e-16!722;CL:0002371!9.50e-13!591;CL:0000055!1.90e-12!180;CL:0000144!3.07e-12!625;CL:0000220!2.53e-11!246;CL:0002321!6.26e-11!248;CL:0000066!6.79e-10!254;CL:0000222!1.03e-08!119;CL:0000680!8.54e-08!57;CL:0000056!8.54e-08!57;CL:0000355!8.54e-08!57;CL:0000192!9.93e-08!42;CL:0000514!9.93e-08!42;CL:0000183!1.28e-07!59;CL:0000187!2.25e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.16e-08;32!CL:0000346;2.53e-08;3!CL:1000428;2.53e-08;3!CL:0000192;7.67e-08;43!CL:0002620;6.18e-07;23 | |ontology_enrichment_celltype_v019=CL:0000359;1.16e-08;32!CL:0000346;2.53e-08;3!CL:1000428;2.53e-08;3!CL:0000192;7.67e-08;43!CL:0002620;6.18e-07;23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000192,4.80e-10,43;CL:0000514,4.80e-10,43;CL:0000359,3.28e-09,32;CL:0000346,2.64e-08,3;CL:1000428,2.64e-08,3;CL:0000187,3.97e-08,55;CL:0000680,1.64e-07,58;CL:0000056,1.64e-07,58;CL:0000355,1.64e-07,58;CL:0000393,5.83e-07,61;CL:0000211,5.83e-07,61;CL:0002620,6.32e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;7.67e-08;43 | |ontology_enrichment_development_v019=CL:0000514;7.67e-08;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.52e-10!79;UBERON:0007798!1.52e-10!79;UBERON:0000490!1.18e-09!138;UBERON:0004290!3.60e-08!70;UBERON:0000914!8.80e-08!83;UBERON:0002329!8.80e-08!83;UBERON:0003077!8.80e-08!83;UBERON:0003059!8.80e-08!83;UBERON:0007282!8.80e-08!83;UBERON:0009618!8.80e-08!83;UBERON:0007285!8.80e-08!83;UBERON:0000055!9.54e-08!69;UBERON:0000486!1.06e-07!82;UBERON:0004535!1.15e-07!110;UBERON:0001981!4.53e-07!60;UBERON:0007500!4.53e-07!60;UBERON:0004537!4.53e-07!60;UBERON:0006965!4.53e-07!60;UBERON:0001009!5.57e-07!113;UBERON:0001637!6.19e-07!42;UBERON:0003509!6.19e-07!42;UBERON:0004572!6.19e-07!42 | |ontology_enrichment_uberon=UBERON:0002049!1.52e-10!79;UBERON:0007798!1.52e-10!79;UBERON:0000490!1.18e-09!138;UBERON:0004290!3.60e-08!70;UBERON:0000914!8.80e-08!83;UBERON:0002329!8.80e-08!83;UBERON:0003077!8.80e-08!83;UBERON:0003059!8.80e-08!83;UBERON:0007282!8.80e-08!83;UBERON:0009618!8.80e-08!83;UBERON:0007285!8.80e-08!83;UBERON:0000055!9.54e-08!69;UBERON:0000486!1.06e-07!82;UBERON:0004535!1.15e-07!110;UBERON:0001981!4.53e-07!60;UBERON:0007500!4.53e-07!60;UBERON:0004537!4.53e-07!60;UBERON:0006965!4.53e-07!60;UBERON:0001009!5.57e-07!113;UBERON:0001637!6.19e-07!42;UBERON:0003509!6.19e-07!42;UBERON:0004572!6.19e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0007500;2.68e-09;56!UBERON:0001981;2.68e-09;56!UBERON:0004537;2.68e-09;56!UBERON:0000412;2.53e-08;3!UBERON:0001992;2.53e-08;3!UBERON:0004573;3.87e-08;33!UBERON:0004571;3.87e-08;33!UBERON:0001637;4.61e-08;42!UBERON:0003509;4.61e-08;42!UBERON:0004572;4.61e-08;42 | |ontology_enrichment_uberon_v019=UBERON:0007500;2.68e-09;56!UBERON:0001981;2.68e-09;56!UBERON:0004537;2.68e-09;56!UBERON:0000412;2.53e-08;3!UBERON:0001992;2.53e-08;3!UBERON:0004573;3.87e-08;33!UBERON:0004571;3.87e-08;33!UBERON:0001637;4.61e-08;42!UBERON:0003509;4.61e-08;42!UBERON:0004572;4.61e-08;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.04e-11,42;UBERON:0003509,1.04e-11,42;UBERON:0004572,1.04e-11,42;UBERON:0007500,6.02e-11,59;UBERON:0001981,6.02e-11,59;UBERON:0004537,6.02e-11,59;UBERON:0006965,6.02e-11,59;UBERON:0000490,9.93e-11,148;UBERON:0002049,2.83e-10,78;UBERON:0007798,2.83e-10,78;UBERON:0000119,3.25e-10,309;UBERON:0000483,8.25e-10,306;UBERON:0002329,2.13e-09,71;UBERON:0003059,2.13e-09,71;UBERON:0007282,2.13e-09,71;UBERON:0004290,2.13e-09,71;UBERON:0009618,2.13e-09,71;UBERON:0003077,3.37e-09,72;UBERON:0007285,3.37e-09,72;UBERON:0007503,3.80e-09,78;UBERON:0007524,5.28e-09,73;UBERON:0000055,7.28e-09,68;UBERON:0004573,1.26e-08,33;UBERON:0004571,1.26e-08,33;UBERON:0000412,2.64e-08,3;UBERON:0001992,2.64e-08,3;UBERON:0004872,3.16e-08,83;UBERON:0003914,6.89e-08,117;UBERON:0005085,9.51e-08,31;UBERON:0000486,2.45e-07,83;UBERON:0002097,2.96e-07,41;UBERON:0002100,4.81e-07,199;UBERON:0001134,8.65e-07,62;UBERON:0002036,8.65e-07,62;UBERON:0003082,8.65e-07,62 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,1.72013755551056,0,0.655324116390517,0.263766978228454,1.23766352960047,0.994192127183747,0,0,0,0.487932798790507,2.09305798730539,1.22400414746552,0.313454721478088,3.14859585844162,0.547497700291537,0.251085279189606,0,0,0.0787107813136792,0,0,0,0.919421224478927,1.204823675113,0.369754010166788,0.774672005803016,0.284338464974843,0.293600439334847,0,0,0.217010870715852,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445641827540694,0,0.443067789167242,0.270803863765016,0.128091319725675,0.260118695119756,0.657751618414705,0,0.289803085735052,0.14828656316206,0,0,0.339928028092699,0,0,0,0,0,0.950452044448374,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,0,0,0,1.50401373190767,0.144846518960824,1.5905718941022,0.486634870302636,2.26883561193763,0.443458794925128,0.175669571386252,0.327447688744282,2.18577172975525,0,0,0,0,0.238490624305342,0,0,1.59009925893364,0,0.694281003215189,1.13061588384802,0.419499436209906,0.550236083880135,1.25396979922086,0.516833518338658,0,0,1.61131726843659,2.28081631715554,0.24406205754817,0.735326160691737,0,0.535798369704479,0.22452937262617,0.225222960966644,0,15.1882505530901,0.732806975721629,0,0,2.61656431285521,0,1.51956613997496,0,0.286836620748814,0.354668382198357,0,1.06748995729705,0.49333509683432,0.311211035399766,0,0.163461903113459,0.756787138224657,0.576175924479999,0.234321431833797,0,2.85235910772225,0,0.352303495931295,0.161872944368132,0.421352420106746,1.22492502752936,0.245668634623536,0,0,0.494533858557114,0.910161361938026,0.718618141816238,0.841680569770331,0,0.277064115484183,0.438977620880838,0,0.300476117813194,0.907457465280168,0.179389635688862,1.2813443329114,0.847727604638247,0.600182192168805,1.23663035086127,0,1.8611685633159,0.168776332241266,1.07180705677318,0,1.10459878370759,0.484938170456436,0,1.20902517873168,1.86516651541536,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0,0.10366105501537,0,0,6.25798129319264,1.28648187638577,1.38134921352481,0.464367928031979,0.721879481669586,0.236613600079688,0.168584690078102,0,0.661763836394364,0,0.71181185733329,0,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0.245976877086227,1.3725424823882,0.219500570817251,3.37205259772859,0.100528972411631,0.185176890317059,0,0,1.44331342025273,0,0.234817388471643,0.577465791044295,0,0.380508304469197,1.58040879591855,0.858486162094873,0,0,0,0,0,0,0.179117045405697,0.290633938513962,1.53353071666084,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0.300343057843917,0,0.784917590417525,0,1.24675085895615,0,7.15312891703765,0,0.797814349754612,0,1.02882949704857,0,0.266422179016099,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0.224170287987055,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0.414415513436035,0.49076596687656,0.500170521059677,0,0.207970861530807,0.535286966391485,0.315404830067869,0.117141414992713,0,0,1.03473071292505,1.32845119707087,0.553107505625109,1.21637060255316,0.391602314925481,0,0,0,0.106727557803444,0.909382714338778,3.32870879020994,0.604780586659361,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0.98552587216571,0,0.581051892299796,0,0,0,0.803701137152247,0,0,0.451199612907412,0.462092022626489,2.35304930753057,0,0.211103257785751,0,0.340187410553031,0.215915916102139,0,1.62567862526312,0,1.27438136522519,0,0.671624264166535,0.657779629937804,0.784306353074702,1.53870075069834,1.96808787419823,0,0,0,0.082509499920588,0,0,0,1.25671933779759,0.308097234229289,0.15350367472613,0.275673144969061,0.429680979473094,0,0.0852266274161009,0.890320356467374,0,0,0.127612712494584,0.10115778085555,0,0,9.0614845120878,1.23213432070436,0,12.179061889051,0.74129687641568,0,0.372158369359667,0.316379424718726,0,0.767693373934002,0,8.59148769400029,1.56989728039846,0.719489830333259,0.54907405947211,0.235624804691373,1.41527737101321,0,0.842516912477962,1.95053495635836,0,2.11300293513511,0.682499557039929,0.141405431953713,0,4.41092274836899,1.32687795048244,0,1.15755106853338,0,1.42037263873893,2.478587984798,1.97186921772569,0.573645408816206,0.196498082026242,0.7133421029625,3.90237170477658,0,0,2.65631221636001,0.699869440489966,0.673554789078584,2.68120910214315,1.08890984861323,0,0,0,0.443430153536676,0,0,0,0.569647187174163,0.238231775457789,0,0,0,0,0.106824071127473,0,0.245040215981032,0.185803175125719,0.144269212976445,0.0711418433484141,0,0,0.191505370132367,0.423347165447766,0,0.280797178113459,0.228234679033192,0,0,0,0.1605880751037,0,0,0,0.921722292925374,0.223676107892416,1.33479313369527,0.19538809540204,0,0,0.270455678475983,0,0,0,0,0,0,0.852408440419239,0.23874448473769,0.296964680832639,0,0,0,0.333926115068718,0.329607748453519,0,0,0,0,0.102268682502155,0,0.311039587661807,0.269605053441981,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0.254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| ||
|short_description=p@chr19:39215203..39215210,+ | |short_description=p@chr19:39215203..39215210,+ | ||
}} | }} |
Latest revision as of 07:23, 26 July 2015
Short description: | p@chr19:39215203..39215210, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:39215203..39215210, + |
Coexpression cluster: | C3367_Mesenchymal_Endothelial_Smooth_Placental_Fibroblast_Astrocyte_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 4.80e-10 | 43 |
smooth muscle myoblast | 4.80e-10 | 43 |
vascular associated smooth muscle cell | 3.28e-09 | 32 |
hair follicle dermal papilla cell | 2.64e-08 | 3 |
stem cell of epidermis | 2.64e-08 | 3 |
muscle cell | 3.97e-08 | 55 |
muscle precursor cell | 1.64e-07 | 58 |
myoblast | 1.64e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.64e-07 | 58 |
electrically responsive cell | 5.83e-07 | 61 |
electrically active cell | 5.83e-07 | 61 |
skin fibroblast | 6.32e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
artery | 1.04e-11 | 42 |
arterial blood vessel | 1.04e-11 | 42 |
arterial system | 1.04e-11 | 42 |
epithelial tube open at both ends | 6.02e-11 | 59 |
blood vessel | 6.02e-11 | 59 |
blood vasculature | 6.02e-11 | 59 |
vascular cord | 6.02e-11 | 59 |
unilaminar epithelium | 9.93e-11 | 148 |
vasculature | 2.83e-10 | 78 |
vascular system | 2.83e-10 | 78 |
cell layer | 3.25e-10 | 309 |
epithelium | 8.25e-10 | 306 |
somite | 2.13e-09 | 71 |
presomitic mesoderm | 2.13e-09 | 71 |
presumptive segmental plate | 2.13e-09 | 71 |
dermomyotome | 2.13e-09 | 71 |
trunk paraxial mesoderm | 2.13e-09 | 71 |
paraxial mesoderm | 3.37e-09 | 72 |
presumptive paraxial mesoderm | 3.37e-09 | 72 |
epithelial vesicle | 3.80e-09 | 78 |
dense mesenchyme tissue | 5.28e-09 | 73 |
vessel | 7.28e-09 | 68 |
systemic artery | 1.26e-08 | 33 |
systemic arterial system | 1.26e-08 | 33 |
dermal papilla | 2.64e-08 | 3 |
papillary layer of dermis | 2.64e-08 | 3 |
splanchnic layer of lateral plate mesoderm | 3.16e-08 | 83 |
epithelial tube | 6.89e-08 | 117 |
ectodermal placode | 9.51e-08 | 31 |
multilaminar epithelium | 2.45e-07 | 83 |
skin of body | 2.96e-07 | 41 |
trunk | 4.81e-07 | 199 |
skeletal muscle tissue | 8.65e-07 | 62 |
striated muscle tissue | 8.65e-07 | 62 |
myotome | 8.65e-07 | 62 |