FFCP PHASE1:Hg19::chr17:29886300..29886309,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:29886300..29886309,+ | |||
|description=CAGE_peak_at_chr17:29886300..29886309,+ | |description=CAGE_peak_at_chr17:29886300..29886309,+ | ||
|id=chr17:29886300..29886309,+ | |id=chr17:29886300..29886309,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.31e-20!42;CL:0000860!2.55e-18!45;CL:0002009!2.20e-15!65;CL:0002194!5.25e-15!63;CL:0000576!5.25e-15!63;CL:0000040!5.25e-15!63;CL:0000559!5.25e-15!63;CL:0000557!5.09e-14!71;CL:0000839!2.71e-13!70;CL:0000048!5.38e-12!430;CL:0000766!2.05e-11!76;CL:0000723!2.12e-11!436;CL:0000034!1.22e-10!444;CL:0002371!1.63e-10!591;CL:0000144!2.25e-10!625;CL:0000548!5.60e-09!679;CL:0000004!5.60e-09!679;CL:0000255!5.60e-09!679;CL:0000012!9.40e-09!682;CL:0002320!5.52e-08!365;CL:0000134!8.05e-08!358;CL:0000219!6.61e-07!390 | |ontology_enrichment_celltype=CL:0002057!2.31e-20!42;CL:0000860!2.55e-18!45;CL:0002009!2.20e-15!65;CL:0002194!5.25e-15!63;CL:0000576!5.25e-15!63;CL:0000040!5.25e-15!63;CL:0000559!5.25e-15!63;CL:0000557!5.09e-14!71;CL:0000839!2.71e-13!70;CL:0000048!5.38e-12!430;CL:0000766!2.05e-11!76;CL:0000723!2.12e-11!436;CL:0000034!1.22e-10!444;CL:0002371!1.63e-10!591;CL:0000144!2.25e-10!625;CL:0000548!5.60e-09!679;CL:0000004!5.60e-09!679;CL:0000255!5.60e-09!679;CL:0000012!9.40e-09!682;CL:0002320!5.52e-08!365;CL:0000134!8.05e-08!358;CL:0000219!6.61e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.90e-24;33!CL:0002057;3.90e-24;33!CL:0000473;1.06e-21;39!CL:0000234;1.06e-21;39!CL:0000576;2.13e-10;48!CL:0000766;4.56e-09;69!CL:0000511;5.74e-09;1!CL:0002625;5.74e-09;1!CL:0000228;5.74e-09;1!CL:0000216;5.74e-09;1!CL:0002372;5.74e-09;1 | |ontology_enrichment_celltype_v019=CL:0000860;3.90e-24;33!CL:0002057;3.90e-24;33!CL:0000473;1.06e-21;39!CL:0000234;1.06e-21;39!CL:0000576;2.13e-10;48!CL:0000766;4.56e-09;69!CL:0000511;5.74e-09;1!CL:0002625;5.74e-09;1!CL:0000228;5.74e-09;1!CL:0000216;5.74e-09;1!CL:0002372;5.74e-09;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.26e-21,48;CL:0000234,5.26e-21,48;CL:0000860,2.83e-20,42;CL:0002057,2.83e-20,42;CL:0002194,2.19e-16,59;CL:0000576,2.19e-16,59;CL:0000040,2.19e-16,59;CL:0000559,2.19e-16,59;CL:0002009,8.65e-16,61;CL:0000839,1.87e-14,66;CL:0000557,3.28e-14,67;CL:0000766,4.29e-13,72;CL:0000511,3.58e-09,1;CL:0002625,3.58e-09,1;CL:0000216,3.58e-09,1;CL:0000228,4.19e-09,1;CL:0002372,4.19e-09,1;CL:0000763,4.46e-08,108;CL:0000049,4.46e-08,108;CL:0002087,1.83e-07,115;CL:0002031,4.52e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;1.03e-15;42 | |ontology_enrichment_development_v019=CL:0002057;1.03e-15;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:6193;5.74e-09;1 | |ontology_enrichment_disease_v019=DOID:6193;5.74e-09;1 | ||
|ontology_enrichment_disease_v019_2=DOID:6193,1.07e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002204!4.03e-15!167;UBERON:0002371!5.81e-15!80;UBERON:0004765!1.78e-14!101;UBERON:0001434!1.78e-14!101;UBERON:0001474!4.55e-13!86;UBERON:0002193!9.79e-12!112;UBERON:0002390!4.33e-11!102;UBERON:0003061!4.33e-11!102;UBERON:0002405!1.84e-10!115;UBERON:0002384!6.01e-08!375;UBERON:0000926!3.90e-07!448;UBERON:0004120!3.90e-07!448;UBERON:0006603!3.90e-07!448;UBERON:0003081!6.01e-07!216 | |ontology_enrichment_uberon=UBERON:0002204!4.03e-15!167;UBERON:0002371!5.81e-15!80;UBERON:0004765!1.78e-14!101;UBERON:0001434!1.78e-14!101;UBERON:0001474!4.55e-13!86;UBERON:0002193!9.79e-12!112;UBERON:0002390!4.33e-11!102;UBERON:0003061!4.33e-11!102;UBERON:0002405!1.84e-10!115;UBERON:0002384!6.01e-08!375;UBERON:0000926!3.90e-07!448;UBERON:0004120!3.90e-07!448;UBERON:0006603!3.90e-07!448;UBERON:0003081!6.01e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0001136;5.74e-09;1!UBERON:0001343;5.74e-09;1!UBERON:0004910;5.74e-09;1!UBERON:0004813;5.74e-09;1 | |ontology_enrichment_uberon_v019=UBERON:0001136;5.74e-09;1!UBERON:0001343;5.74e-09;1!UBERON:0004910;5.74e-09;1!UBERON:0004813;5.74e-09;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.33e-14,76;UBERON:0001474,2.24e-13,82;UBERON:0004765,5.38e-12,90;UBERON:0002405,1.54e-11,93;UBERON:0002390,7.74e-11,98;UBERON:0003061,7.74e-11,98;UBERON:0001434,1.41e-10,100;UBERON:0002193,1.25e-09,108;UBERON:0001136,3.58e-09,1;UBERON:0001343,3.58e-09,1;UBERON:0004910,3.58e-09,1;UBERON:0005154,3.58e-09,1;UBERON:0005295,3.58e-09,1;UBERON:0004813,3.58e-09,1;UBERON:0005297,3.58e-09,1;UBERON:0005294,3.58e-09,1;UBERON:0010141,3.58e-09,1;UBERON:0005891,3.58e-09,1;UBERON:0002204,9.44e-09,167;UBERON:0000926,4.63e-07,315;UBERON:0004120,4.63e-07,315;UBERON:0006603,4.63e-07,315;UBERON:0003081,9.91e-07,203 | |||
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| ||
|short_description=p@chr17:29886300..29886309,+ | |short_description=p@chr17:29886300..29886309,+ | ||
}} | }} |
Latest revision as of 15:24, 25 July 2015
Short description: | p@chr17:29886300..29886309, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:29886300..29886309, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.26e-21 | 48 |
phagocyte | 5.26e-21 | 48 |
classical monocyte | 2.83e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.83e-20 | 42 |
monopoietic cell | 2.19e-16 | 59 |
monocyte | 2.19e-16 | 59 |
monoblast | 2.19e-16 | 59 |
promonocyte | 2.19e-16 | 59 |
macrophage dendritic cell progenitor | 8.65e-16 | 61 |
myeloid lineage restricted progenitor cell | 1.87e-14 | 66 |
granulocyte monocyte progenitor cell | 3.28e-14 | 67 |
myeloid leukocyte | 4.29e-13 | 72 |
androgen binding protein secreting cell | 3.58e-09 | 1 |
seminiferous tubule epithelial cell | 3.58e-09 | 1 |
Sertoli cell | 3.58e-09 | 1 |
multinucleate cell | 4.19e-09 | 1 |
myotube | 4.19e-09 | 1 |
myeloid cell | 4.46e-08 | 108 |
common myeloid progenitor | 4.46e-08 | 108 |
nongranular leukocyte | 1.83e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 4.52e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.33e-14 | 76 |
bone element | 2.24e-13 | 82 |
skeletal element | 5.38e-12 | 90 |
immune system | 1.54e-11 | 93 |
hematopoietic system | 7.74e-11 | 98 |
blood island | 7.74e-11 | 98 |
skeletal system | 1.41e-10 | 100 |
hemolymphoid system | 1.25e-09 | 108 |
mesothelium | 3.58e-09 | 1 |
seminiferous tubule of testis | 3.58e-09 | 1 |
epithelium of male gonad | 3.58e-09 | 1 |
epithelial cord | 3.58e-09 | 1 |
sex cord | 3.58e-09 | 1 |
seminiferous tubule epithelium | 3.58e-09 | 1 |
testis sex cord | 3.58e-09 | 1 |
genital ridge | 3.58e-09 | 1 |
primitive sex cord of indifferent gonad | 3.58e-09 | 1 |
coelomic epithelium | 3.58e-09 | 1 |
musculoskeletal system | 9.44e-09 | 167 |
mesoderm | 4.63e-07 | 315 |
mesoderm-derived structure | 4.63e-07 | 315 |
presumptive mesoderm | 4.63e-07 | 315 |
lateral plate mesoderm | 9.91e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.07e-08 | 1 |