FFCP PHASE1:Hg19::chr6:41715128..41715142,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5225 | |EntrezGene=5225 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8890 | |HGNC=8890 | ||
|TSSclassifier=strong | |||
|UniProt=Q4VXA6,P20142,Q8IUM8,F5GY22,B4DVZ3 | |UniProt=Q4VXA6,P20142,Q8IUM8,F5GY22,B4DVZ3 | ||
|association_with_transcript=0bp_to_ENST00000356667,ENST00000373025,ENST00000394278,ENST00000424183,ENST00000425343,NM_001166424,NM_002630_5end | |association_with_transcript=0bp_to_ENST00000356667,ENST00000373025,ENST00000394278,ENST00000424183,ENST00000425343,NM_001166424,NM_002630_5end | ||
|cluster_id=chr6:41715128..41715142,- | |||
|coexpression_cluster_id=C27 | |coexpression_cluster_id=C27 | ||
|description=CAGE_peak_1_at_PGC_5end | |description=CAGE_peak_1_at_PGC_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.45e-10;12 | |ontology_enrichment_celltype_v019=CL:0000182;3.45e-10;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.48e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.37e-16;11!UBERON:0009497;1.61e-13;13!UBERON:0001041;1.13e-09;30!UBERON:0003104;5.02e-07;31 | |ontology_enrichment_development_v019=UBERON:0004161;4.37e-16;11!UBERON:0009497;1.61e-13;13!UBERON:0001041;1.13e-09;30!UBERON:0003104;5.02e-07;31 | ||
|ontology_enrichment_disease=DOID:114!5.85e-07!2;DOID:3493!6.40e-07!2 | |ontology_enrichment_disease=DOID:114!5.85e-07!2;DOID:3493!6.40e-07!2 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004921!6.93e-21!129;UBERON:0004185!6.93e-21!129;UBERON:0001007!3.98e-17!155;UBERON:0001555!3.98e-17!155;UBERON:0007026!3.98e-17!155;UBERON:0005057!2.52e-16!26;UBERON:0007023!8.63e-16!115;UBERON:0001041!2.31e-15!98;UBERON:0004119!6.02e-15!169;UBERON:0000925!6.02e-15!169;UBERON:0006595!6.02e-15!169;UBERON:0009497!7.06e-15!25;UBERON:0000015!7.06e-15!25;UBERON:0002423!7.06e-15!25;UBERON:0006235!7.06e-15!25;UBERON:0004161!7.06e-15!25;UBERON:0007499!1.11e-14!25;UBERON:0000077!2.11e-14!130;UBERON:0008835!2.79e-14!22;UBERON:0003894!2.79e-14!22;UBERON:0002107!4.26e-14!19;UBERON:0006925!4.26e-14!19;UBERON:0008836!4.26e-14!19;UBERON:0009856!5.19e-14!26;UBERON:0009854!1.48e-13!23;UBERON:0005177!1.49e-12!107;UBERON:0003929!5.41e-12!54;UBERON:0002365!1.90e-11!31;UBERON:0002330!1.90e-11!31;UBERON:0005911!4.27e-11!82;UBERON:0000481!4.51e-11!347;UBERON:0000466!1.16e-10!126;UBERON:0002530!1.28e-10!59;UBERON:0006947!3.41e-10!3;UBERON:0004054!3.41e-10!3;UBERON:0005172!3.76e-10!55;UBERON:0005173!3.76e-10!55;UBERON:0000949!8.62e-10!45;UBERON:0002368!1.18e-09!35;UBERON:0000477!1.63e-09!286;UBERON:0004111!2.35e-09!241;UBERON:0002417!8.67e-09!61;UBERON:0000916!8.67e-09!61;UBERON:0009569!2.13e-08!113;UBERON:0003104!4.25e-08!238;UBERON:0009142!4.25e-08!238;UBERON:0005409!8.07e-08!35;UBERON:0000062!8.77e-08!511;UBERON:0005904!9.82e-08!4;UBERON:0000025!4.85e-07!194 | |ontology_enrichment_uberon=UBERON:0004921!6.93e-21!129;UBERON:0004185!6.93e-21!129;UBERON:0001007!3.98e-17!155;UBERON:0001555!3.98e-17!155;UBERON:0007026!3.98e-17!155;UBERON:0005057!2.52e-16!26;UBERON:0007023!8.63e-16!115;UBERON:0001041!2.31e-15!98;UBERON:0004119!6.02e-15!169;UBERON:0000925!6.02e-15!169;UBERON:0006595!6.02e-15!169;UBERON:0009497!7.06e-15!25;UBERON:0000015!7.06e-15!25;UBERON:0002423!7.06e-15!25;UBERON:0006235!7.06e-15!25;UBERON:0004161!7.06e-15!25;UBERON:0007499!1.11e-14!25;UBERON:0000077!2.11e-14!130;UBERON:0008835!2.79e-14!22;UBERON:0003894!2.79e-14!22;UBERON:0002107!4.26e-14!19;UBERON:0006925!4.26e-14!19;UBERON:0008836!4.26e-14!19;UBERON:0009856!5.19e-14!26;UBERON:0009854!1.48e-13!23;UBERON:0005177!1.49e-12!107;UBERON:0003929!5.41e-12!54;UBERON:0002365!1.90e-11!31;UBERON:0002330!1.90e-11!31;UBERON:0005911!4.27e-11!82;UBERON:0000481!4.51e-11!347;UBERON:0000466!1.16e-10!126;UBERON:0002530!1.28e-10!59;UBERON:0006947!3.41e-10!3;UBERON:0004054!3.41e-10!3;UBERON:0005172!3.76e-10!55;UBERON:0005173!3.76e-10!55;UBERON:0000949!8.62e-10!45;UBERON:0002368!1.18e-09!35;UBERON:0000477!1.63e-09!286;UBERON:0004111!2.35e-09!241;UBERON:0002417!8.67e-09!61;UBERON:0000916!8.67e-09!61;UBERON:0009569!2.13e-08!113;UBERON:0003104!4.25e-08!238;UBERON:0009142!4.25e-08!238;UBERON:0005409!8.07e-08!35;UBERON:0000062!8.77e-08!511;UBERON:0005904!9.82e-08!4;UBERON:0000025!4.85e-07!194 | ||
|ontology_enrichment_uberon_v019=UBERON:0002423;6.71e-09;25!UBERON:0002107;7.36e-09;19!UBERON:0006925;7.36e-09;19!UBERON:0006947;5.09e-08;3!UBERON:0004054;5.09e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0002423;6.71e-09;25!UBERON:0002107;7.36e-09;19!UBERON:0006925;7.36e-09;19!UBERON:0006947;5.09e-08;3!UBERON:0004054;5.09e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,8.37e-11,118;UBERON:0007023,5.68e-10,114;UBERON:0001007,3.79e-09,145;UBERON:0001555,3.79e-09,145;UBERON:0007026,3.79e-09,145;UBERON:0009497,6.75e-09,25;UBERON:0000015,6.75e-09,25;UBERON:0002423,6.75e-09,25;UBERON:0006235,6.75e-09,25;UBERON:0004161,6.75e-09,25;UBERON:0002107,7.41e-09,19;UBERON:0006925,7.41e-09,19;UBERON:0008836,7.41e-09,19;UBERON:0011216,4.63e-08,223;UBERON:0006947,5.09e-08,3;UBERON:0004054,5.09e-08,3;UBERON:0005177,5.80e-08,101;UBERON:0004119,6.78e-08,160;UBERON:0000925,6.78e-08,160;UBERON:0006595,6.78e-08,160;UBERON:0005911,1.11e-07,82;UBERON:0008835,1.45e-07,22;UBERON:0003894,1.45e-07,22;UBERON:0003929,2.00e-07,54;UBERON:0004111,2.72e-07,240;UBERON:0009854,3.28e-07,23;UBERON:0001041,5.40e-07,87;UBERON:0002365,6.56e-07,31;UBERON:0002330,6.56e-07,31 | |||
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| ||
|short_description=p1@PGC | |short_description=p1@PGC | ||
}} | }} |
Latest revision as of 19:03, 18 September 2015
Short description: | p1@PGC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGC_5end |
Coexpression cluster: | C27_pancreas_temporal_duodenum_salivary_ductus_umbilical_lung |
Association with transcript: | 0bp_to_ENST00000356667, ENST00000373025, ENST00000394278, ENST00000424183, ENST00000425343, NM_001166424, NM_002630_5end |
EntrezGene: | PGC |
HGNC: | 8890 |
UniProt: | Q4VXA6P20142Q8IUM8F5GY22B4DVZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.48e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 8.37e-11 | 118 |
adult organism | 5.68e-10 | 114 |
digestive system | 3.79e-09 | 145 |
digestive tract | 3.79e-09 | 145 |
primitive gut | 3.79e-09 | 145 |
epithelium of foregut-midgut junction | 6.75e-09 | 25 |
anatomical boundary | 6.75e-09 | 25 |
hepatobiliary system | 6.75e-09 | 25 |
foregut-midgut junction | 6.75e-09 | 25 |
septum transversum | 6.75e-09 | 25 |
liver | 7.41e-09 | 19 |
digestive gland | 7.41e-09 | 19 |
liver bud | 7.41e-09 | 19 |
organ system subdivision | 4.63e-08 | 223 |
male genital duct | 5.09e-08 | 3 |
internal male genitalia | 5.09e-08 | 3 |
trunk region element | 5.80e-08 | 101 |
endoderm-derived structure | 6.78e-08 | 160 |
endoderm | 6.78e-08 | 160 |
presumptive endoderm | 6.78e-08 | 160 |
endo-epithelium | 1.11e-07 | 82 |
hepatic diverticulum | 1.45e-07 | 22 |
liver primordium | 1.45e-07 | 22 |
gut epithelium | 2.00e-07 | 54 |
anatomical conduit | 2.72e-07 | 240 |
digestive tract diverticulum | 3.28e-07 | 23 |
foregut | 5.40e-07 | 87 |
exocrine gland | 6.56e-07 | 31 |
exocrine system | 6.56e-07 | 31 |