FFCP PHASE1:Hg19::chr1:62208091..62208182,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:62208091..62208182,+
|short_description=p1@INADL
|description=CAGE_peak_1_at_INADL_5end
|association_with_transcript=0bp_to_ENST00000255202,ENST00000316485...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10207 | |EntrezGene=10207 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28881 | |HGNC=28881 | ||
|TSSclassifier=strong | |||
|UniProt=F8W8B3,F8W8T2,Q8NI35,E7EMF0 | |UniProt=F8W8B3,F8W8T2,Q8NI35,E7EMF0 | ||
|association_with_transcript=0bp_to_ENST00000255202,ENST00000316485,ENST00000371156,ENST00000371158,ENST00000395513,ENST00000459752,ENST00000484562,NM_176877,uc001daa.2,uc001dab.2,uc009waf.1_5end | |||
|cluster_id=chr1:62208091..62208182,+ | |||
|description=CAGE_peak_1_at_INADL_5end | |||
|id=chr1:62208091..62208182,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.30e-18!254;CL:0000223!2.34e-10!59;CL:0002076!5.44e-10!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.46e-08;42!CL:0000791;4.67e-07;18!CL:0000789;4.67e-07;18!CL:0002419;4.67e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.15e-18,253;CL:0000223,1.52e-11,58;CL:0002076,3.45e-11,42;CL:0000791,5.20e-07,18;CL:0000789,5.20e-07,18;CL:0002420,5.20e-07,18;CL:0002419,5.20e-07,18;CL:0000790,5.20e-07,18 | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.85e-07;86!UBERON:0008947;3.29e-07;29!CL:0000790;4.67e-07;18!UBERON:0001041;7.85e-07;30 | |||
|ontology_enrichment_disease=DOID:305!3.86e-25!106;DOID:0050687!9.83e-20!143;DOID:299!3.00e-08!25;DOID:1749!9.10e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:299;2.55e-08;25!DOID:305;3.13e-08;106!DOID:1749;5.81e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.12e-25,106;DOID:0050687,3.77e-20,143;DOID:299,2.57e-08,25;DOID:1749,6.03e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.33e-15!169;UBERON:0000925!2.33e-15!169;UBERON:0006595!2.33e-15!169;UBERON:0001007!2.34e-13!155;UBERON:0001555!2.34e-13!155;UBERON:0007026!2.34e-13!155;UBERON:0004921!3.24e-13!129;UBERON:0004185!3.24e-13!129;UBERON:0007023!2.18e-11!115;UBERON:0000077!7.26e-11!130;UBERON:0001004!1.58e-10!72;UBERON:0001041!6.77e-10!98;UBERON:0000065!4.35e-08!53;UBERON:0000466!4.64e-08!126;UBERON:0005911!1.87e-07!82;UBERON:0000464!2.07e-07!104;UBERON:0008947!3.19e-07!38;UBERON:0003258!3.19e-07!38;UBERON:0005177!3.53e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.51e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.41e-14,160;UBERON:0000925,2.41e-14,160;UBERON:0006595,2.41e-14,160;UBERON:0004921,4.50e-13,118;UBERON:0001007,1.43e-12,145;UBERON:0001555,1.43e-12,145;UBERON:0007026,1.43e-12,145;UBERON:0007023,1.50e-11,114;UBERON:0001004,2.89e-10,74;UBERON:0001041,4.04e-10,87;UBERON:0005177,1.96e-08,101;UBERON:0000065,3.71e-08,54;UBERON:0011216,7.34e-08,223;UBERON:0008947,1.69e-07,38;UBERON:0003258,1.69e-07,38;UBERON:0005911,3.72e-07,82 | |||
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| ||
|short_description=p1@INADL | |||
}} | }} |
Latest revision as of 18:55, 18 September 2015
Short description: | p1@INADL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_INADL_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000255202, ENST00000316485, ENST00000371156, ENST00000371158, ENST00000395513, ENST00000459752, ENST00000484562, NM_176877, uc001daa.2, uc001dab.2, uc009waf.1_5end |
EntrezGene: | INADL |
HGNC: | 28881 |
UniProt: | F8W8B3F8W8T2Q8NI35E7EMF0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.15e-18 | 253 |
endodermal cell | 1.52e-11 | 58 |
endo-epithelial cell | 3.45e-11 | 42 |
mature alpha-beta T cell | 5.20e-07 | 18 |
alpha-beta T cell | 5.20e-07 | 18 |
immature T cell | 5.20e-07 | 18 |
mature T cell | 5.20e-07 | 18 |
immature alpha-beta T cell | 5.20e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.41e-14 | 160 |
endoderm | 2.41e-14 | 160 |
presumptive endoderm | 2.41e-14 | 160 |
subdivision of digestive tract | 4.50e-13 | 118 |
digestive system | 1.43e-12 | 145 |
digestive tract | 1.43e-12 | 145 |
primitive gut | 1.43e-12 | 145 |
adult organism | 1.50e-11 | 114 |
respiratory system | 2.89e-10 | 74 |
foregut | 4.04e-10 | 87 |
trunk region element | 1.96e-08 | 101 |
respiratory tract | 3.71e-08 | 54 |
organ system subdivision | 7.34e-08 | 223 |
respiratory primordium | 1.69e-07 | 38 |
endoderm of foregut | 1.69e-07 | 38 |
endo-epithelium | 3.72e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.12e-25 | 106 |
cell type cancer | 3.77e-20 | 143 |
adenocarcinoma | 2.57e-08 | 25 |
squamous cell carcinoma | 6.03e-08 | 14 |