FFCP PHASE1:Hg19::chr4:174440247..174440276,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:174440247..174440276,- | |||
|description=CAGE_peak_at_chr4:174440247..174440276,- | |description=CAGE_peak_at_chr4:174440247..174440276,- | ||
|id=chr4:174440247..174440276,- | |id=chr4:174440247..174440276,- | ||
|ontology_enrichment_celltype=CL:0002537!1.52e-10!5;CL:0000187!6.41e-07!54 | |ontology_enrichment_celltype=CL:0002537!1.52e-10!5;CL:0000187!6.41e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0002537;1.52e-14;5!CL:0000349;9.77e-14;19!CL:0002195;1.16e-10;2!CL:0002571;1.16e-10;2!CL:0002536;1.14e-09;2!CL:0000333;1.09e-08;5!CL:0000632;6.46e-07;3 | |ontology_enrichment_celltype_v019=CL:0002537;1.52e-14;5!CL:0000349;9.77e-14;19!CL:0002195;1.16e-10;2!CL:0002571;1.16e-10;2!CL:0002536;1.14e-09;2!CL:0000333;1.09e-08;5!CL:0000632;6.46e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002537,1.58e-14,5;CL:0000349,1.15e-13,19;CL:0002195,1.16e-10,2;CL:0002571,1.16e-10,2;CL:0002536,1.28e-09,2;CL:0000632,5.66e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;2.63e-07;6 | |ontology_enrichment_disease_v019=DOID:169;2.63e-07;6 | ||
|ontology_enrichment_disease_v019_2=DOID:169,2.55e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000478!1.13e-19!24;UBERON:0005631!5.33e-18!14;UBERON:0000158!5.33e-18!14;UBERON:0000305!4.76e-14!7;UBERON:0004871!4.09e-12!8;UBERON:0000059!1.81e-10!11;UBERON:0001155!4.88e-10!9;UBERON:0004872!4.33e-09!84;UBERON:0004923!5.49e-09!57;UBERON:0005409!1.43e-08!35;UBERON:0000926!1.98e-08!448;UBERON:0004120!1.98e-08!448;UBERON:0006603!1.98e-08!448;UBERON:0000160!1.66e-07!27;UBERON:0000468!1.75e-07!659;UBERON:0003914!1.95e-07!118;UBERON:0007100!4.29e-07!27;UBERON:0003104!4.40e-07!238;UBERON:0009142!4.40e-07!238;UBERON:0002385!5.11e-07!63;UBERON:0001015!5.11e-07!63;UBERON:0000383!5.11e-07!63;UBERON:0000948!5.87e-07!24;UBERON:0005498!5.87e-07!24;UBERON:0004140!5.87e-07!24;UBERON:0009881!5.87e-07!24;UBERON:0004141!5.87e-07!24;UBERON:0003084!5.87e-07!24;UBERON:0007005!5.87e-07!24;UBERON:0004139!5.87e-07!24;UBERON:0004291!5.87e-07!24;UBERON:0005057!8.56e-07!26 | |ontology_enrichment_uberon=UBERON:0000478!1.13e-19!24;UBERON:0005631!5.33e-18!14;UBERON:0000158!5.33e-18!14;UBERON:0000305!4.76e-14!7;UBERON:0004871!4.09e-12!8;UBERON:0000059!1.81e-10!11;UBERON:0001155!4.88e-10!9;UBERON:0004872!4.33e-09!84;UBERON:0004923!5.49e-09!57;UBERON:0005409!1.43e-08!35;UBERON:0000926!1.98e-08!448;UBERON:0004120!1.98e-08!448;UBERON:0006603!1.98e-08!448;UBERON:0000160!1.66e-07!27;UBERON:0000468!1.75e-07!659;UBERON:0003914!1.95e-07!118;UBERON:0007100!4.29e-07!27;UBERON:0003104!4.40e-07!238;UBERON:0009142!4.40e-07!238;UBERON:0002385!5.11e-07!63;UBERON:0001015!5.11e-07!63;UBERON:0000383!5.11e-07!63;UBERON:0000948!5.87e-07!24;UBERON:0005498!5.87e-07!24;UBERON:0004140!5.87e-07!24;UBERON:0009881!5.87e-07!24;UBERON:0004141!5.87e-07!24;UBERON:0003084!5.87e-07!24;UBERON:0007005!5.87e-07!24;UBERON:0004139!5.87e-07!24;UBERON:0004291!5.87e-07!24;UBERON:0005057!8.56e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;2.90e-22;7!UBERON:0005631;2.07e-15;10!UBERON:0000158;2.07e-15;10!UBERON:0000160;2.66e-14;17!UBERON:0005409;6.35e-14;22!UBERON:0000059;1.13e-13;11!UBERON:0000478;1.97e-13;24!UBERON:0001155;5.73e-12;9!UBERON:0002107;1.00e-10;19!UBERON:0006925;1.00e-10;19!UBERON:0002423;2.19e-10;25!UBERON:0000013;1.09e-08;5!UBERON:0002410;1.09e-08;5!UBERON:0004921;2.15e-08;33!UBERON:0001007;9.51e-08;81 | |ontology_enrichment_uberon_v019=UBERON:0000305;2.90e-22;7!UBERON:0005631;2.07e-15;10!UBERON:0000158;2.07e-15;10!UBERON:0000160;2.66e-14;17!UBERON:0005409;6.35e-14;22!UBERON:0000059;1.13e-13;11!UBERON:0000478;1.97e-13;24!UBERON:0001155;5.73e-12;9!UBERON:0002107;1.00e-10;19!UBERON:0006925;1.00e-10;19!UBERON:0002423;2.19e-10;25!UBERON:0000013;1.09e-08;5!UBERON:0002410;1.09e-08;5!UBERON:0004921;2.15e-08;33!UBERON:0001007;9.51e-08;81 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,3.32e-22,7;UBERON:0004871,2.33e-19,8;UBERON:0005409,6.42e-15,25;UBERON:0005631,2.12e-14,14;UBERON:0000158,2.12e-14,14;UBERON:0000160,2.55e-14,17;UBERON:0000059,9.09e-14,11;UBERON:0000478,2.38e-13,24;UBERON:0001155,5.48e-12,9;UBERON:0009854,2.85e-11,23;UBERON:0002107,9.72e-11,19;UBERON:0006925,9.72e-11,19;UBERON:0008836,9.72e-11,19;UBERON:0009497,2.13e-10,25;UBERON:0000015,2.13e-10,25;UBERON:0002423,2.13e-10,25;UBERON:0006235,2.13e-10,25;UBERON:0004161,2.13e-10,25;UBERON:0009856,8.03e-10,26;UBERON:0008835,3.85e-09,22;UBERON:0003894,3.85e-09,22;UBERON:0004921,5.89e-09,118;UBERON:0000013,1.05e-08,5;UBERON:0002410,1.05e-08,5;UBERON:0007499,6.29e-08,25;UBERON:0001007,1.71e-07,145;UBERON:0001555,1.71e-07,145;UBERON:0007026,1.71e-07,145;UBERON:0004119,3.23e-07,160;UBERON:0000925,3.23e-07,160;UBERON:0006595,3.23e-07,160;UBERON:0002050,4.49e-07,564 | |||
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| ||
|short_description=p@chr4:174440247..174440276,- | |short_description=p@chr4:174440247..174440276,- | ||
}} | }} |
Latest revision as of 03:25, 30 July 2015
Short description: | p@chr4:174440247..174440276, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:174440247..174440276, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 1.58e-14 | 5 |
extraembryonic cell | 1.15e-13 | 19 |
hepatic stem cell | 1.16e-10 | 2 |
hepatic mesenchymal stem cell | 1.16e-10 | 2 |
amniotic epithelial cell | 1.28e-09 | 2 |
hepatic stellate cell | 5.66e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
amnion | 3.32e-22 | 7 |
somatic layer of lateral plate mesoderm | 2.33e-19 | 8 |
gastrointestinal system | 6.42e-15 | 25 |
extraembryonic membrane | 2.12e-14 | 14 |
membranous layer | 2.12e-14 | 14 |
intestine | 2.55e-14 | 17 |
large intestine | 9.09e-14 | 11 |
extraembryonic structure | 2.38e-13 | 24 |
colon | 5.48e-12 | 9 |
digestive tract diverticulum | 2.85e-11 | 23 |
liver | 9.72e-11 | 19 |
digestive gland | 9.72e-11 | 19 |
liver bud | 9.72e-11 | 19 |
epithelium of foregut-midgut junction | 2.13e-10 | 25 |
anatomical boundary | 2.13e-10 | 25 |
hepatobiliary system | 2.13e-10 | 25 |
foregut-midgut junction | 2.13e-10 | 25 |
septum transversum | 2.13e-10 | 25 |
sac | 8.03e-10 | 26 |
hepatic diverticulum | 3.85e-09 | 22 |
liver primordium | 3.85e-09 | 22 |
subdivision of digestive tract | 5.89e-09 | 118 |
sympathetic nervous system | 1.05e-08 | 5 |
autonomic nervous system | 1.05e-08 | 5 |
epithelial sac | 6.29e-08 | 25 |
digestive system | 1.71e-07 | 145 |
digestive tract | 1.71e-07 | 145 |
primitive gut | 1.71e-07 | 145 |
endoderm-derived structure | 3.23e-07 | 160 |
endoderm | 3.23e-07 | 160 |
presumptive endoderm | 3.23e-07 | 160 |
embryonic structure | 4.49e-07 | 564 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.55e-07 | 6 |