FFCP PHASE1:Hg19::chr13:30002890..30002905,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23281 | |EntrezGene=23281 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20595 | |HGNC=20595 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=44bp_to_ENST00000542829_5end | |association_with_transcript=44bp_to_ENST00000542829_5end | ||
|cluster_id=chr13:30002890..30002905,+ | |||
|coexpression_cluster_id=C56 | |coexpression_cluster_id=C56 | ||
|description=CAGE_peak_4_at_MTUS2_5end | |description=CAGE_peak_4_at_MTUS2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002150!3.99e-08!3;CL:0000861!3.99e-08!3;CL:0002504!4.93e-07!3;CL:1000279!4.93e-07!3;CL:1000280!4.93e-07!3 | |ontology_enrichment_celltype=CL:0002150!3.99e-08!3;CL:0000861!3.99e-08!3;CL:0002504!4.93e-07!3;CL:1000279!4.93e-07!3;CL:1000280!4.93e-07!3 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;4.72e-15;1!UBERON:0010226;6.22e-15;1!UBERON:0010227;9.36e-15;1!UBERON:0005062;2.18e-14;4!UBERON:0007284;2.18e-14;4 | |ontology_enrichment_development_v019=UBERON:0004140;4.72e-15;1!UBERON:0010226;6.22e-15;1!UBERON:0010227;9.36e-15;1!UBERON:0005062;2.18e-14;4!UBERON:0007284;2.18e-14;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;7.60e-28;2!DOID:178;1.15e-14;1!DOID:326;1.15e-14;1!DOID:3978;1.15e-14;1!DOID:3394;1.15e-14;1!DOID:5844;1.15e-14;1!DOID:1287;1.91e-14;4 | |ontology_enrichment_disease_v019=DOID:114;7.60e-28;2!DOID:178;1.15e-14;1!DOID:326;1.15e-14;1!DOID:3978;1.15e-14;1!DOID:3394;1.15e-14;1!DOID:5844;1.15e-14;1!DOID:1287;1.91e-14;4 | ||
|ontology_enrichment_disease_v019_2=DOID:114,7.10e-28,2;DOID:178,1.07e-14,1;DOID:326,1.07e-14,1;DOID:3978,1.07e-14,1;DOID:3394,1.07e-14,1;DOID:5844,1.07e-14,1;DOID:1287,1.85e-14,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.09e-26!115;UBERON:0001049!2.51e-17!57;UBERON:0005068!2.51e-17!57;UBERON:0006241!2.51e-17!57;UBERON:0007135!2.51e-17!57;UBERON:0002780!3.48e-16!41;UBERON:0001890!3.48e-16!41;UBERON:0006240!3.48e-16!41;UBERON:0003080!1.10e-15!42;UBERON:0002616!4.94e-15!59;UBERON:0002020!3.76e-14!34;UBERON:0003528!3.76e-14!34;UBERON:0001869!1.45e-13!32;UBERON:0003075!7.09e-13!86;UBERON:0007284!7.09e-13!86;UBERON:0000955!7.22e-13!69;UBERON:0006238!7.22e-13!69;UBERON:0001893!1.47e-12!34;UBERON:0002346!5.45e-12!90;UBERON:0002619!1.44e-11!22;UBERON:0000064!1.57e-11!219;UBERON:0002791!2.66e-11!33;UBERON:0001017!6.53e-11!82;UBERON:0001950!1.25e-10!20;UBERON:0005743!4.02e-10!86;UBERON:0000956!6.48e-10!25;UBERON:0000203!6.48e-10!25;UBERON:0003056!2.59e-09!61;UBERON:0000200!3.06e-09!6;UBERON:0004151!9.47e-09!3;UBERON:0003978!1.02e-08!3;UBERON:0009751!1.02e-08!3;UBERON:0000946!1.02e-08!3;UBERON:0002523!1.02e-08!3;UBERON:0005983!1.02e-08!3;UBERON:0002165!1.02e-08!3;UBERON:0002062!1.02e-08!3;UBERON:0007280!1.02e-08!3;UBERON:0000062!1.11e-08!511;UBERON:0000073!1.34e-08!94;UBERON:0001016!1.34e-08!94;UBERON:0001155!4.15e-08!9;UBERON:0000988!4.93e-07!3;UBERON:0004121!5.22e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!1.09e-26!115;UBERON:0001049!2.51e-17!57;UBERON:0005068!2.51e-17!57;UBERON:0006241!2.51e-17!57;UBERON:0007135!2.51e-17!57;UBERON:0002780!3.48e-16!41;UBERON:0001890!3.48e-16!41;UBERON:0006240!3.48e-16!41;UBERON:0003080!1.10e-15!42;UBERON:0002616!4.94e-15!59;UBERON:0002020!3.76e-14!34;UBERON:0003528!3.76e-14!34;UBERON:0001869!1.45e-13!32;UBERON:0003075!7.09e-13!86;UBERON:0007284!7.09e-13!86;UBERON:0000955!7.22e-13!69;UBERON:0006238!7.22e-13!69;UBERON:0001893!1.47e-12!34;UBERON:0002346!5.45e-12!90;UBERON:0002619!1.44e-11!22;UBERON:0000064!1.57e-11!219;UBERON:0002791!2.66e-11!33;UBERON:0001017!6.53e-11!82;UBERON:0001950!1.25e-10!20;UBERON:0005743!4.02e-10!86;UBERON:0000956!6.48e-10!25;UBERON:0000203!6.48e-10!25;UBERON:0003056!2.59e-09!61;UBERON:0000200!3.06e-09!6;UBERON:0004151!9.47e-09!3;UBERON:0003978!1.02e-08!3;UBERON:0009751!1.02e-08!3;UBERON:0000946!1.02e-08!3;UBERON:0002523!1.02e-08!3;UBERON:0005983!1.02e-08!3;UBERON:0002165!1.02e-08!3;UBERON:0002062!1.02e-08!3;UBERON:0007280!1.02e-08!3;UBERON:0000062!1.11e-08!511;UBERON:0000073!1.34e-08!94;UBERON:0001016!1.34e-08!94;UBERON:0001155!4.15e-08!9;UBERON:0000988!4.93e-07!3;UBERON:0004121!5.22e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.28e-33;25!UBERON:0004151;6.06e-19;3!UBERON:0003978;7.59e-19;3!UBERON:0000946;7.59e-19;3!UBERON:0000948;2.60e-15;22!UBERON:0002084;6.22e-15;1!UBERON:0002082;6.22e-15;1!UBERON:0002146;7.13e-15;1!UBERON:0005623;7.13e-15;1!UBERON:0002079;9.36e-15;1!UBERON:0002135;1.15e-14;1!UBERON:0002081;5.01e-08;2!UBERON:0002133;5.55e-08;2!UBERON:0003103;7.45e-07;61 | |ontology_enrichment_uberon_v019=UBERON:0007100;1.28e-33;25!UBERON:0004151;6.06e-19;3!UBERON:0003978;7.59e-19;3!UBERON:0000946;7.59e-19;3!UBERON:0000948;2.60e-15;22!UBERON:0002084;6.22e-15;1!UBERON:0002082;6.22e-15;1!UBERON:0002146;7.13e-15;1!UBERON:0005623;7.13e-15;1!UBERON:0002079;9.36e-15;1!UBERON:0002135;1.15e-14;1!UBERON:0002081;5.01e-08;2!UBERON:0002133;5.55e-08;2!UBERON:0003103;7.45e-07;61 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,4.39e-31,27;UBERON:0004151,6.06e-19,3;UBERON:0003978,7.94e-19,3;UBERON:0009751,7.94e-19,3;UBERON:0000946,7.94e-19,3;UBERON:0002523,7.94e-19,3;UBERON:0005983,7.94e-19,3;UBERON:0002165,7.94e-19,3;UBERON:0002062,7.94e-19,3;UBERON:0007280,7.94e-19,3;UBERON:0002084,6.22e-15,1;UBERON:0002082,6.22e-15,1;UBERON:0010226,6.22e-15,1;UBERON:0002146,7.13e-15,1;UBERON:0005623,7.13e-15,1;UBERON:0002079,9.36e-15,1;UBERON:0002135,1.23e-14,1;UBERON:0000948,4.97e-14,24;UBERON:0005498,4.97e-14,24;UBERON:0004140,4.97e-14,24;UBERON:0009881,4.97e-14,24;UBERON:0004141,4.97e-14,24;UBERON:0003084,4.97e-14,24;UBERON:0007005,4.97e-14,24;UBERON:0004139,4.97e-14,24;UBERON:0004291,4.97e-14,24;UBERON:0003103,6.42e-12,68;UBERON:0004797,1.32e-08,7;UBERON:0002081,5.02e-08,2;UBERON:0010227,5.02e-08,2;UBERON:0002133,5.74e-08,2;UBERON:0001009,6.47e-07,112 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0.168776332241266,0.389748020644795,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,1.20956117331872,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.71623345421307,1.78178808499583,0.307160702099232,0,0.281338832821026,0,0,0,0,0.552567831062295,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.557694977114413,0.230850775511391,0,0.46112780877612,0,1.3037684630641,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16107597546902,0.365446585430928,0.410577285266046,0.193978032976839,0,0,0,0,0.316553979779393,0.586654148204409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23425921017803,8.24977526442061,0.717873024576814,2.99518500748487,13.3060074922337,7.14148663813992,19.147289658717,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,3.57347663186684,9.93137955548147,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0.261906694481422,0,0,0.270150338473579,0,0.413373593002368,0.253663240775627,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0.271878931907327,0.263091094251396,0,0,0,0.314231179832004,0,0,0,0,0,0,1.97610423125813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0.437119121007915,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0.99798106963804,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0.168776332241266,0.389748020644795,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0.220587945464788,0,0.237270619111097,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,1.20956117331872,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.71623345421307,1.78178808499583,0.307160702099232,0,0.281338832821026,0,0,0,0,0.552567831062295,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.557694977114413,0.230850775511391,0,0.46112780877612,0,1.3037684630641,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16107597546902,0.365446585430928,0.410577285266046,0.193978032976839,0,0,0,0,0.316553979779393,0.586654148204409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23425921017803,8.24977526442061,0.717873024576814,2.99518500748487,13.3060074922337,7.14148663813992,19.147289658717,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,3.57347663186684,9.93137955548147,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.434674820589684,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0.261906694481422,0,0,0.270150338473579,0,0.413373593002368,0.253663240775627,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0.271878931907327,0.263091094251396,0,0,0,0.314231179832004,0,0,0,0,0,0,1.97610423125813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0.437119121007915,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0.99798106963804,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p4@MTUS2 | |short_description=p4@MTUS2 | ||
}} | }} |
Latest revision as of 01:13, 17 September 2015
Short description: | p4@MTUS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MTUS2_5end |
Coexpression cluster: | C56_heart_left_umbilical_skeletal_penis_diaphragm_tongue |
Association with transcript: | 44bp_to_ENST00000542829_5end |
EntrezGene: | MTUS2 |
HGNC: | 20595 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 4.39e-31 | 27 |
cardiac chamber | 6.06e-19 | 3 |
valve | 7.94e-19 | 3 |
cardiac mesenchyme | 7.94e-19 | 3 |
cardial valve | 7.94e-19 | 3 |
tunica intima | 7.94e-19 | 3 |
heart layer | 7.94e-19 | 3 |
endocardium | 7.94e-19 | 3 |
endocardial cushion | 7.94e-19 | 3 |
presumptive endocardium | 7.94e-19 | 3 |
heart left ventricle | 6.22e-15 | 1 |
cardiac ventricle | 6.22e-15 | 1 |
future cardiac ventricle | 6.22e-15 | 1 |
pulmonary valve | 7.13e-15 | 1 |
semi-lunar valve | 7.13e-15 | 1 |
left cardiac atrium | 9.36e-15 | 1 |
mitral valve | 1.23e-14 | 1 |
heart | 4.97e-14 | 24 |
primitive heart tube | 4.97e-14 | 24 |
primary heart field | 4.97e-14 | 24 |
anterior lateral plate mesoderm | 4.97e-14 | 24 |
heart tube | 4.97e-14 | 24 |
heart primordium | 4.97e-14 | 24 |
cardiac mesoderm | 4.97e-14 | 24 |
cardiogenic plate | 4.97e-14 | 24 |
heart rudiment | 4.97e-14 | 24 |
compound organ | 6.42e-12 | 68 |
blood vessel layer | 1.32e-08 | 7 |
cardiac atrium | 5.02e-08 | 2 |
future cardiac atrium | 5.02e-08 | 2 |
atrioventricular valve | 5.74e-08 | 2 |
circulatory system | 6.47e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
heart disease | 7.10e-28 | 2 |
vascular disease | 1.07e-14 | 1 |
ischemia | 1.07e-14 | 1 |
extrinsic cardiomyopathy | 1.07e-14 | 1 |
myocardial ischemia | 1.07e-14 | 1 |
myocardial infarction | 1.07e-14 | 1 |
cardiovascular system disease | 1.85e-14 | 4 |