FFCP PHASE1:Hg19::chr17:37856299..37856329,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2064 | |EntrezGene=2064 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3430 | |HGNC=3430 | ||
|TSSclassifier=strong | |||
|UniProt=P04626 | |UniProt=P04626 | ||
|association_with_transcript=45bp_to_ENST00000269571,ENST00000540147,NM_004448,uc002hsn.1,uc002hso.2,uc002hsp.2,uc010cwb.2,uc010wek.1_5end | |association_with_transcript=45bp_to_ENST00000269571,ENST00000540147,NM_004448,uc002hsn.1,uc002hso.2,uc002hsp.2,uc010cwb.2,uc010wek.1_5end | ||
|cluster_id=chr17:37856299..37856329,+ | |||
|coexpression_cluster_id=C412 | |coexpression_cluster_id=C412 | ||
|description=CAGE_peak_1_at_ERBB2_5end | |description=CAGE_peak_1_at_ERBB2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!2.76e-12!180;CL:0002321!6.87e-11!248;CL:0000220!2.95e-10!246;CL:0000066!1.65e-09!254 | |ontology_enrichment_celltype=CL:0000055!2.76e-12!180;CL:0002321!6.87e-11!248;CL:0000220!2.95e-10!246;CL:0000066!1.65e-09!254 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.79e-07;19 | |ontology_enrichment_celltype_v019=CL:0000349;1.79e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.53e-10,250;CL:0000066,5.03e-09,253;CL:0000349,1.59e-07,19 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:299!1.50e-07!25 | |ontology_enrichment_disease=DOID:299!1.50e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:299;1.66e-07;25 | |ontology_enrichment_disease_v019=DOID:299;1.66e-07;25 | ||
|ontology_enrichment_disease_v019_2=DOID:299,1.35e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000481!1.32e-19!347;UBERON:0000468!4.32e-19!659;UBERON:0000475!4.82e-19!365;UBERON:0003104!1.41e-17!238;UBERON:0009142!1.41e-17!238;UBERON:0002100!3.90e-17!216;UBERON:0004119!2.77e-13!169;UBERON:0000925!2.77e-13!169;UBERON:0006595!2.77e-13!169;UBERON:0000467!2.37e-12!625;UBERON:0000480!4.46e-12!626;UBERON:0005256!9.59e-12!143;UBERON:0000922!5.04e-11!612;UBERON:0001007!1.41e-10!155;UBERON:0001555!1.41e-10!155;UBERON:0007026!1.41e-10!155;UBERON:0000062!1.41e-10!511;UBERON:0009569!1.80e-10!113;UBERON:0003103!3.12e-10!69;UBERON:0000119!7.00e-10!312;UBERON:0000483!9.89e-10!309;UBERON:0003914!1.55e-09!118;UBERON:0004921!5.18e-09!129;UBERON:0004185!5.18e-09!129;UBERON:0000466!5.42e-09!126;UBERON:0002050!5.77e-09!605;UBERON:0005423!5.77e-09!605;UBERON:0000077!9.24e-09!130;UBERON:0003102!9.73e-09!95;UBERON:0000923!1.07e-08!604;UBERON:0005291!1.07e-08!604;UBERON:0006598!1.07e-08!604;UBERON:0002532!1.07e-08!604;UBERON:0004111!4.57e-08!241;UBERON:0000464!4.84e-08!104;UBERON:0000477!4.88e-08!286;UBERON:0005631!8.85e-08!14;UBERON:0000158!8.85e-08!14;UBERON:0004923!1.32e-07!57;UBERON:0001048!1.56e-07!168;UBERON:0001008!1.72e-07!45;UBERON:0006554!2.80e-07!44;UBERON:0005177!2.81e-07!107;UBERON:0000490!3.89e-07!138;UBERON:0005156!4.62e-07!59;UBERON:0000990!4.62e-07!59;UBERON:0000064!4.65e-07!219 | |ontology_enrichment_uberon=UBERON:0000481!1.32e-19!347;UBERON:0000468!4.32e-19!659;UBERON:0000475!4.82e-19!365;UBERON:0003104!1.41e-17!238;UBERON:0009142!1.41e-17!238;UBERON:0002100!3.90e-17!216;UBERON:0004119!2.77e-13!169;UBERON:0000925!2.77e-13!169;UBERON:0006595!2.77e-13!169;UBERON:0000467!2.37e-12!625;UBERON:0000480!4.46e-12!626;UBERON:0005256!9.59e-12!143;UBERON:0000922!5.04e-11!612;UBERON:0001007!1.41e-10!155;UBERON:0001555!1.41e-10!155;UBERON:0007026!1.41e-10!155;UBERON:0000062!1.41e-10!511;UBERON:0009569!1.80e-10!113;UBERON:0003103!3.12e-10!69;UBERON:0000119!7.00e-10!312;UBERON:0000483!9.89e-10!309;UBERON:0003914!1.55e-09!118;UBERON:0004921!5.18e-09!129;UBERON:0004185!5.18e-09!129;UBERON:0000466!5.42e-09!126;UBERON:0002050!5.77e-09!605;UBERON:0005423!5.77e-09!605;UBERON:0000077!9.24e-09!130;UBERON:0003102!9.73e-09!95;UBERON:0000923!1.07e-08!604;UBERON:0005291!1.07e-08!604;UBERON:0006598!1.07e-08!604;UBERON:0002532!1.07e-08!604;UBERON:0004111!4.57e-08!241;UBERON:0000464!4.84e-08!104;UBERON:0000477!4.88e-08!286;UBERON:0005631!8.85e-08!14;UBERON:0000158!8.85e-08!14;UBERON:0004923!1.32e-07!57;UBERON:0001048!1.56e-07!168;UBERON:0001008!1.72e-07!45;UBERON:0006554!2.80e-07!44;UBERON:0005177!2.81e-07!107;UBERON:0000490!3.89e-07!138;UBERON:0005156!4.62e-07!59;UBERON:0000990!4.62e-07!59;UBERON:0000064!4.65e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;5.87e-08;33 | |ontology_enrichment_uberon_v019=UBERON:0004921;5.87e-08;33 | ||
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|phase1_expression=12.3541297903979,10.7050261945492,8.45726424575827,11.0080628188443,9.38618298297304,15.7020934338066,5.06599756336621,6.94891860769514,4.96252693579693,14.2525683170875,39.7746665744284,21.4072544687569,45.8954542117509,8.29234564832312,13.2558950291166,10.0848771967766,12.6565850885035,11.684961446198,10.2465887746006,11.2040162849877,17.1360580645173,27.5840154900717,7.15589967827642,9.99183303032055,12.6798065990751,0,0,0,0,0,0.619264493264304,9.19421224478927,15.9639136952473,11.8321283253372,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,8.04841031644363,9.20610445273418,9.03597880961416,10.5280961233537,9.12533069453189,3.1811437882044,6.8128881842369,9.54801653357085,11.3081992705908,11.5941917114926,20.7601834663875,23.3148984507227,24.4717732237723,0.97364218096405,0.348259474598534,0.132957960518865,0,0,0,4.17401055470081,3.4409383804245,6.2485290289367,4.52246353539208,12.5849830862972,4.67700671298115,3.76190939766259,1.8089173141853,0.35576626268671,0,3.22263453687318,0.760272105718513,0.732186172644509,0.367663080345869,8.1014194788176,5.00078478390847,4.4905874525234,4.72968218029953,1.53316637465883,4.74632829784064,6.04565754970344,0,0,17.4437620857014,8.94549513051573,9.49728837484348,13.3733272621351,39.2966170425875,10.9947198481491,10.0921968025615,7.47242970107935,18.7467336797042,9.64754209739275,5.11900553864815,8.66348086501331,12.5626664945293,13.82822218752,3.74914290934075,6.24320153660641,4.56377457235559,6.27684458317565,4.57994544710683,4.69431538667581,3.79217178096071,8.16616685019573,5.77321291365309,6.19954687054593,5.94001428641027,10.3852110296994,12.7422590671324,15.090980978141,3.53505839303539,5.50521487436642,9.42017992646222,14.0472838681868,9.50112166976961,6.91095070970345,6.80593098960126,18.6565221116416,8.75585294156127,10.3846631568185,30.609291800609,10.7174630407976,12.8820270022815,8.74749224758472,25.4852261684312,10.6206335625707,14.3887251319145,10.0334389520106,23.2770321819089,38.696045584311,9.06768884048762,9.15627198476633,5.9910864480622,8.45512973831587,10.0381608386151,28.2978998220661,56.0600919999883,27.8865462886844,11.4027160516907,36.8388442278417,53.2866944250712,6.25798129319264,10.2918550110862,6.90674606762403,8.35862270457562,12.9938306700525,4.96888560167344,3.70886318171824,3.61516544825223,4.96322877295773,3.4860711054785,4.50814176311084,4.31460186112526,4.51309369788296,5.00171304030308,0,1.40241773803446,20.57870056657,22.0513067078313,7.60530208930985,2.94848165003288,1.18157981336281,0,24.4746992700796,7.72055146343365,14.8162885301645,5.62008766288098,5.12697759299317,9.0736676255359,3.58389135841357,4.15973914111831,12.9898207822746,8.69478037313076,20.0768867143255,1.01056513432752,0.462985512576611,0.380508304469197,17.3844967551041,18.0282094039923,0,0,0,7.49870671894216,6.2153387433578,6.09632918142262,4.29880908973672,4.06887513919547,10.7347150166259,0,0,0.414656231081544,0.576479813667846,0.88369703398466,3.55588208036147,12.9876064689814,4.68869788840188,10.2643467613623,4.73006466435288,7.20823338825402,4.85904935471983,8.97048674762886,8.7192013766656,5.5737097223922,14.6077038806289,14.3062578340753,4.22651376278,9.57377219705534,10.4007436911366,11.3171244675343,8.5109479213967,14.1203754878533,4.86125178437702,24.4179722426149,7.40916303102692,3.25736184293735,5.68627117988073,3.95975936466715,15.3734082300389,14.816068796205,20.2945172099576,0,0,0,11.501993063596,11.4861935834114,2.85273810081437,5.64647096003559,6.98619496671304,6.62525563987614,0,0,0,0,7.11464947822898,3.90419561572865,3.09315525111078,3.01529277601828,2.55175500661265,0,0,0,7.60687248658667,9.00306937907419,5.15403545029498,11.2304265226636,12.4900292158013,13.5624076929184,13.3541213091693,14.1444666872028,25.0148254461583,6.2083842775503,5.97803038681893,10.3246734383354,2.5196248195744,20.363320376125,28.8240476001119,0,0,0.106727557803444,16.0657612866517,29.9583791118895,30.8438099196274,9.42809669711352,14.1185015425017,8.98112302185835,9.61043619417757,15.3512174720011,14.4768529029247,10.3892646511494,6.01417805830357,6.5697838365857,5.33826514089759,7.2695620085707,6.39157081529776,11.1190693624292,21.855205263058,6.72191219232043,8.84071250867472,6.00900854422166,12.981317080983,22.1087810324632,5.39107359730903,25.0991926136594,14.6139224653261,4.85537492907228,6.8240030442538,2.89159298970077,4.75015015424707,4.62681758070868,19.7790899407013,28.5963171097266,9.43042210266642,10.8039881160734,13.2086105286085,0,0,2.56450125116389,10.4964686623906,3.90454073597164,28.6454012380668,4.94475110019054,3.4653989966647,14.9309039879005,13.0012049207304,8.03419649220798,3.67348729510063,4.31336127921004,5.06562126596228,3.44591431211326,4.83391101907231,7.1058180017972,7.67039646744908,21.9909128047441,4.29740779938543,8.840743098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| ||
|short_description=p1@ERBB2 | |short_description=p1@ERBB2 | ||
}} | }} |
Latest revision as of 22:34, 19 September 2015
Short description: | p1@ERBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ERBB2_5end |
Coexpression cluster: | C412_serous_breast_papillotubular_ductus_seminal_kidney_clear |
Association with transcript: | 45bp_to_ENST00000269571, ENST00000540147, NM_004448, uc002hsn.1, uc002hso.2, uc002hsp.2, uc010cwb.2, uc010wek.1_5end |
EntrezGene: | ERBB2 |
HGNC: | 3430 |
UniProt: | P04626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.53e-10 | 250 |
epithelial cell | 5.03e-09 | 253 |
extraembryonic cell | 1.59e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
trunk | 2.60e-16 | 199 |
mesenchyme | 1.04e-14 | 160 |
entire embryonic mesenchyme | 1.04e-14 | 160 |
endoderm-derived structure | 1.82e-13 | 160 |
endoderm | 1.82e-13 | 160 |
presumptive endoderm | 1.82e-13 | 160 |
digestive system | 1.05e-10 | 145 |
digestive tract | 1.05e-10 | 145 |
primitive gut | 1.05e-10 | 145 |
compound organ | 2.28e-10 | 68 |
subdivision of trunk | 3.22e-10 | 112 |
trunk mesenchyme | 4.44e-10 | 122 |
renal system | 2.44e-09 | 48 |
epithelial tube | 2.79e-09 | 117 |
cell layer | 3.45e-09 | 309 |
urinary system structure | 4.05e-09 | 47 |
epithelium | 4.82e-09 | 306 |
surface structure | 5.35e-09 | 99 |
embryo | 5.89e-09 | 592 |
subdivision of digestive tract | 6.51e-09 | 118 |
extraembryonic membrane | 7.95e-08 | 14 |
membranous layer | 7.95e-08 | 14 |
primordium | 1.96e-07 | 160 |
organ component layer | 2.14e-07 | 66 |
anatomical conduit | 2.28e-07 | 240 |
developing anatomical structure | 2.37e-07 | 581 |
reproductive structure | 4.01e-07 | 59 |
reproductive system | 4.01e-07 | 59 |
trunk region element | 5.25e-07 | 101 |
orifice | 6.85e-07 | 36 |
unilaminar epithelium | 9.63e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.35e-07 | 25 |