FFCP PHASE1:Hg19::chr3:53195216..53195240,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5580 | |EntrezGene=5580 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9399 | |HGNC=9399 | ||
|TSSclassifier=strong | |||
|UniProt=Q05655 | |UniProt=Q05655 | ||
|association_with_transcript=0bp_to_NM_006254,NM_212539,uc003dgl.2,uc003dgm.2_5end | |association_with_transcript=0bp_to_NM_006254,NM_212539,uc003dgl.2,uc003dgm.2_5end | ||
|cluster_id=chr3:53195216..53195240,+ | |||
|coexpression_cluster_id=C26 | |coexpression_cluster_id=C26 | ||
|description=CAGE_peak_1_at_PRKCD_5end | |description=CAGE_peak_1_at_PRKCD_5end | ||
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|ontology_enrichment_celltype=CL:0000738!6.92e-47!140;CL:0000037!5.07e-45!172;CL:0000566!5.07e-45!172;CL:0000988!1.87e-44!182;CL:0002032!1.11e-43!165;CL:0000837!1.11e-43!165;CL:0000766!2.44e-38!76;CL:0002031!6.67e-37!124;CL:0002087!1.06e-36!119;CL:0000763!1.41e-36!112;CL:0000049!1.41e-36!112;CL:0000557!4.04e-35!71;CL:0002009!4.43e-32!65;CL:0000839!3.22e-31!70;CL:0002194!6.51e-31!63;CL:0000576!6.51e-31!63;CL:0000040!6.51e-31!63;CL:0000559!6.51e-31!63;CL:0002057!1.29e-26!42;CL:0000860!2.15e-25!45;CL:0000134!2.75e-08!358;CL:0000945!5.87e-08!24;CL:0000826!5.87e-08!24;CL:0002320!1.05e-07!365;CL:0000542!2.39e-07!53;CL:0000051!2.39e-07!53;CL:0000838!4.23e-07!52;CL:0000451!7.26e-07!10 | |ontology_enrichment_celltype=CL:0000738!6.92e-47!140;CL:0000037!5.07e-45!172;CL:0000566!5.07e-45!172;CL:0000988!1.87e-44!182;CL:0002032!1.11e-43!165;CL:0000837!1.11e-43!165;CL:0000766!2.44e-38!76;CL:0002031!6.67e-37!124;CL:0002087!1.06e-36!119;CL:0000763!1.41e-36!112;CL:0000049!1.41e-36!112;CL:0000557!4.04e-35!71;CL:0002009!4.43e-32!65;CL:0000839!3.22e-31!70;CL:0002194!6.51e-31!63;CL:0000576!6.51e-31!63;CL:0000040!6.51e-31!63;CL:0000559!6.51e-31!63;CL:0002057!1.29e-26!42;CL:0000860!2.15e-25!45;CL:0000134!2.75e-08!358;CL:0000945!5.87e-08!24;CL:0000826!5.87e-08!24;CL:0002320!1.05e-07!365;CL:0000542!2.39e-07!53;CL:0000051!2.39e-07!53;CL:0000838!4.23e-07!52;CL:0000451!7.26e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.08e-19;33!CL:0002057;1.08e-19;33!CL:0000473;3.58e-19;39!CL:0000234;3.58e-19;39!CL:0000576;1.98e-18;48!CL:0000766;8.19e-17;69!CL:0002087;9.17e-11;104!CL:0000738;1.07e-10;136!CL:0000763;1.45e-10;100!CL:0000988;5.47e-08;177!CL:0000945;6.16e-08;24!CL:0000451;6.87e-07;10 | |ontology_enrichment_celltype_v019=CL:0000860;1.08e-19;33!CL:0002057;1.08e-19;33!CL:0000473;3.58e-19;39!CL:0000234;3.58e-19;39!CL:0000576;1.98e-18;48!CL:0000766;8.19e-17;69!CL:0002087;9.17e-11;104!CL:0000738;1.07e-10;136!CL:0000763;1.45e-10;100!CL:0000988;5.47e-08;177!CL:0000945;6.16e-08;24!CL:0000451;6.87e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.14e-47,136;CL:0000037,1.50e-45,168;CL:0000988,2.16e-45,177;CL:0002032,3.09e-44,161;CL:0000837,3.09e-44,161;CL:0000766,8.11e-40,72;CL:0002031,1.29e-37,120;CL:0002087,1.87e-37,115;CL:0000763,2.09e-37,108;CL:0000049,2.09e-37,108;CL:0000557,1.41e-36,67;CL:0002009,1.51e-33,61;CL:0000839,1.64e-32,66;CL:0002194,2.24e-32,59;CL:0000576,2.24e-32,59;CL:0000040,2.24e-32,59;CL:0000559,2.24e-32,59;CL:0000473,1.04e-29,48;CL:0000234,1.04e-29,48;CL:0000860,1.29e-26,42;CL:0002057,1.29e-26,42;CL:0000134,2.53e-08,354;CL:0000945,5.87e-08,24;CL:0000826,5.87e-08,24;CL:0002320,9.69e-08,361;CL:0000542,2.39e-07,53;CL:0000051,2.39e-07,53;CL:0000838,4.24e-07,52;CL:0000451,7.26e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;2.50e-19;42!CL:0000049;1.91e-10;108 | |ontology_enrichment_development_v019=CL:0002057;2.50e-19;42!CL:0000049;1.91e-10;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.90e-40!102;UBERON:0003061!9.90e-40!102;UBERON:0002193!4.28e-34!112;UBERON:0002371!2.60e-31!80;UBERON:0001474!4.11e-26!86;UBERON:0002405!3.26e-20!115;UBERON:0004765!1.01e-19!101;UBERON:0001434!1.01e-19!101;UBERON:0003081!1.27e-17!216;UBERON:0000178!1.72e-08!15;UBERON:0000179!1.72e-08!15;UBERON:0000463!1.72e-08!15;UBERON:0002204!2.60e-08!167;UBERON:0002384!6.96e-07!375 | |ontology_enrichment_uberon=UBERON:0002390!9.90e-40!102;UBERON:0003061!9.90e-40!102;UBERON:0002193!4.28e-34!112;UBERON:0002371!2.60e-31!80;UBERON:0001474!4.11e-26!86;UBERON:0002405!3.26e-20!115;UBERON:0004765!1.01e-19!101;UBERON:0001434!1.01e-19!101;UBERON:0003081!1.27e-17!216;UBERON:0000178!1.72e-08!15;UBERON:0000179!1.72e-08!15;UBERON:0000463!1.72e-08!15;UBERON:0002204!2.60e-08!167;UBERON:0002384!6.96e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.61e-08;15!UBERON:0000179;1.61e-08;15!UBERON:0000463;1.61e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.61e-08;15!UBERON:0000179;1.61e-08;15!UBERON:0000463;1.61e-08;15 | ||
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| ||
|short_description=p1@PRKCD | |short_description=p1@PRKCD | ||
}} | }} |
Latest revision as of 01:29, 19 September 2015
Short description: | p1@PRKCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRKCD_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_NM_006254, NM_212539, uc003dgl.2, uc003dgm.2_5end |
EntrezGene: | PRKCD |
HGNC: | 9399 |
UniProt: | Q05655 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.14e-47 | 136 |
hematopoietic stem cell | 1.50e-45 | 168 |
hematopoietic cell | 2.16e-45 | 177 |
hematopoietic oligopotent progenitor cell | 3.09e-44 | 161 |
hematopoietic multipotent progenitor cell | 3.09e-44 | 161 |
myeloid leukocyte | 8.11e-40 | 72 |
hematopoietic lineage restricted progenitor cell | 1.29e-37 | 120 |
nongranular leukocyte | 1.87e-37 | 115 |
myeloid cell | 2.09e-37 | 108 |
common myeloid progenitor | 2.09e-37 | 108 |
granulocyte monocyte progenitor cell | 1.41e-36 | 67 |
macrophage dendritic cell progenitor | 1.51e-33 | 61 |
myeloid lineage restricted progenitor cell | 1.64e-32 | 66 |
monopoietic cell | 2.24e-32 | 59 |
monocyte | 2.24e-32 | 59 |
monoblast | 2.24e-32 | 59 |
promonocyte | 2.24e-32 | 59 |
defensive cell | 1.04e-29 | 48 |
phagocyte | 1.04e-29 | 48 |
classical monocyte | 1.29e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.29e-26 | 42 |
mesenchymal cell | 2.53e-08 | 354 |
lymphocyte of B lineage | 5.87e-08 | 24 |
pro-B cell | 5.87e-08 | 24 |
connective tissue cell | 9.69e-08 | 361 |
lymphocyte | 2.39e-07 | 53 |
common lymphoid progenitor | 2.39e-07 | 53 |
lymphoid lineage restricted progenitor cell | 4.24e-07 | 52 |
dendritic cell | 7.26e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.05e-41 | 98 |
blood island | 9.05e-41 | 98 |
hemolymphoid system | 7.52e-35 | 108 |
bone marrow | 2.12e-32 | 76 |
immune system | 2.53e-27 | 93 |
bone element | 6.65e-27 | 82 |
skeletal element | 3.45e-24 | 90 |
skeletal system | 1.85e-19 | 100 |
lateral plate mesoderm | 9.05e-17 | 203 |
blood | 1.72e-08 | 15 |
haemolymphatic fluid | 1.72e-08 | 15 |
organism substance | 1.72e-08 | 15 |
musculoskeletal system | 8.04e-08 | 167 |
connective tissue | 6.54e-07 | 371 |