FFCP PHASE1:Hg19::chr13:43636356..43636378,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:43636356..43636378,+ | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_at_chr13:43636356..43636378,+ | |description=CAGE_peak_at_chr13:43636356..43636378,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000349!2.14e-08!3;CL:0002577!2.14e-08!3;CL:0002541!2.77e-08!3;CL:0000710!3.72e-07!20;CL:0000066!3.86e-07!254;CL:0000064!7.40e-07!3;CL:0005012!7.40e-07!3;CL:0000067!7.40e-07!3;CL:0002304!7.40e-07!3 | |ontology_enrichment_celltype=CL:0000349!2.14e-08!3;CL:0002577!2.14e-08!3;CL:0002541!2.77e-08!3;CL:0000710!3.72e-07!20;CL:0000066!3.86e-07!254;CL:0000064!7.40e-07!3;CL:0005012!7.40e-07!3;CL:0000067!7.40e-07!3;CL:0002304!7.40e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;5.25e-45;19!CL:0002577;9.08e-23;3!CL:0002541;1.88e-22;3!CL:0002536;5.98e-16;2!CL:0002537;4.11e-14;5!CL:0002379;3.17e-08;1 | |ontology_enrichment_celltype_v019=CL:0000349;5.25e-45;19!CL:0002577;9.08e-23;3!CL:0002541;1.88e-22;3!CL:0002536;5.98e-16;2!CL:0002537;4.11e-14;5!CL:0002379;3.17e-08;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.25e-45,19;CL:0002577,8.75e-23,3;CL:0002541,1.96e-22,3;CL:0002536,5.99e-16,2;CL:0002537,4.11e-14,5;CL:0002379,3.79e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.59e-08;1!UBERON:0000358;2.13e-08;1!UBERON:0005754;3.17e-08;1 | |ontology_enrichment_development_v019=UBERON:0003124;1.59e-08;1!UBERON:0000358;2.13e-08;1!UBERON:0005754;3.17e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3620;3.17e-08;1!DOID:3565;3.17e-08;1 | |ontology_enrichment_disease_v019=DOID:3620;3.17e-08;1!DOID:3565;3.17e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3620,3.79e-08,1;DOID:3565,3.79e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!6.21e-24!14;UBERON:0000158!6.21e-24!14;UBERON:0000478!5.52e-23!24;UBERON:0003124!3.70e-17!7;UBERON:0001987!1.44e-10!4;UBERON:0004340!1.44e-10!4;UBERON:0004923!6.18e-10!57;UBERON:0000305!3.90e-09!7;UBERON:0000476!2.77e-08!3;UBERON:0000920!2.77e-08!3;UBERON:0001264!5.30e-08!10;UBERON:0003922!5.30e-08!10;UBERON:0003923!5.30e-08!10;UBERON:0003924!5.30e-08!10;UBERON:0003921!5.30e-08!10;UBERON:0004871!6.47e-08!8;UBERON:0001045!3.41e-07!11;UBERON:0002075!7.21e-07!18;UBERON:0001778!7.40e-07!3;UBERON:0001775!7.40e-07!3 | |ontology_enrichment_uberon=UBERON:0005631!6.21e-24!14;UBERON:0000158!6.21e-24!14;UBERON:0000478!5.52e-23!24;UBERON:0003124!3.70e-17!7;UBERON:0001987!1.44e-10!4;UBERON:0004340!1.44e-10!4;UBERON:0004923!6.18e-10!57;UBERON:0000305!3.90e-09!7;UBERON:0000476!2.77e-08!3;UBERON:0000920!2.77e-08!3;UBERON:0001264!5.30e-08!10;UBERON:0003922!5.30e-08!10;UBERON:0003923!5.30e-08!10;UBERON:0003924!5.30e-08!10;UBERON:0003921!5.30e-08!10;UBERON:0004871!6.47e-08!8;UBERON:0001045!3.41e-07!11;UBERON:0002075!7.21e-07!18;UBERON:0001778!7.40e-07!3;UBERON:0001775!7.40e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.88e-65;24!UBERON:0005631;3.62e-46;10!UBERON:0000158;3.62e-46;10!UBERON:0001987;1.56e-29;4!UBERON:0000305;1.32e-26;7!UBERON:0003124;1.88e-22;3!UBERON:0000920;1.88e-22;3!UBERON:0001264;1.83e-11;10!UBERON:0000998;3.17e-08;1!UBERON:0006868;3.17e-08;1!UBERON:0002331;6.09e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0000478;1.88e-65;24!UBERON:0005631;3.62e-46;10!UBERON:0000158;3.62e-46;10!UBERON:0001987;1.56e-29;4!UBERON:0000305;1.32e-26;7!UBERON:0003124;1.88e-22;3!UBERON:0000920;1.88e-22;3!UBERON:0001264;1.83e-11;10!UBERON:0000998;3.17e-08;1!UBERON:0006868;3.17e-08;1!UBERON:0002331;6.09e-07;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.39e-73,14;UBERON:0000158,2.39e-73,14;UBERON:0000478,1.97e-65,24;UBERON:0003124,3.45e-50,7;UBERON:0001987,1.51e-29,4;UBERON:0004340,1.51e-29,4;UBERON:0000305,1.32e-26,7;UBERON:0004871,2.88e-23,8;UBERON:0000920,1.96e-22,3;UBERON:0004923,7.55e-14,66;UBERON:0001264,1.83e-11,10;UBERON:0000998,2.84e-08,1;UBERON:0006868,2.84e-08,1;UBERON:0004175,4.42e-07,25;UBERON:0002331,6.21e-07,10;UBERON:0000358,6.21e-07,10;UBERON:0000307,6.21e-07,10;UBERON:0000091,6.21e-07,10;UBERON:0000087,6.21e-07,10;UBERON:0007010,6.21e-07,10;UBERON:0007806,6.21e-07,10;UBERON:0008780,6.21e-07,10;UBERON:0005728,6.21e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,37.3534746342595,36.3998429955266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.137236457477,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0.368738337083406,0,0,0,0,0,0,56.9879834318968,9.98612637062982,29.331858452979,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.604297247958111,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0.322260734604821,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,280.763514051523,19.8966336157868,146.822815603433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0,0.108647371922008,73.3702667383415,1.28236630762607,32.5151213371367,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,8.89563386041866,2.22415090103705,0.730953646538188,0,0,0,0,0.586993856796269,0,0.789168805698781,0,0,0,0,0.103688191397247,2.65861549082874,0.330991955875499,1.56966459203613,1.19472429772959,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0.195551382734803,0,0,0,4.61089334893139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,1.17632909849086,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.70479321629213,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0.633936370075881,0,0,0,0,0,0.139879507719444,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05603509927041,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0.116241425368125,0,0,0.207216164163037,0,0.691259661814092,0,0,0,1.69354820076372,0.22910686854405,0,0,0,0,1.70685094975177,0,0,0,0,0,0,0,0.45178432815584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0139567316191,0.101988829741982,0,0.918948995348449,0,0,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.325613074443898,0,0,14.2822071349473,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,37.3534746342595,36.3998429955266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.137236457477,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0.368738337083406,0,0,0,0,0,0,56.9879834318968,9.98612637062982,29.331858452979,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.604297247958111,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0.322260734604821,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,280.763514051523,19.8966336157868,146.822815603433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0,0,0,0,0.108647371922008,73.3702667383415,1.28236630762607,32.5151213371367,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0,0,8.89563386041866,2.22415090103705,0.730953646538188,0,0,0,0,0.586993856796269,0,0.789168805698781,0,0,0,0,0.103688191397247,2.65861549082874,0.330991955875499,1.56966459203613,1.19472429772959,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0.195551382734803,0,0,0,4.61089334893139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,1.17632909849086,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.70479321629213,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0.633936370075881,0,0,0,0,0,0.139879507719444,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05603509927041,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0.116241425368125,0,0,0.207216164163037,0,0.691259661814092,0,0,0,1.69354820076372,0.22910686854405,0,0,0,0,1.70685094975177,0,0,0,0,0,0,0,0.45178432815584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0139567316191,0.101988829741982,0,0.918948995348449,0,0,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.325613074443898,0,0,14.2822071349473,2.34640942403454,0,0,0,0,0 | ||
|short_description=p@chr13:43636356..43636378,+ | |short_description=p@chr13:43636356..43636378,+ | ||
}} | }} |
Latest revision as of 16:08, 24 July 2015
Short description: | p@chr13:43636356..43636378, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:43636356..43636378, + |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.25e-45 | 19 |
placental epithelial cell | 8.75e-23 | 3 |
chorionic membrane mesenchymal stem cell | 1.96e-22 | 3 |
amniotic epithelial cell | 5.99e-16 | 2 |
amnion mesenchymal stem cell | 4.11e-14 | 5 |
meningothelial cell | 3.79e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.39e-73 | 14 |
membranous layer | 2.39e-73 | 14 |
extraembryonic structure | 1.97e-65 | 24 |
chorion | 3.45e-50 | 7 |
placenta | 1.51e-29 | 4 |
allantois | 1.51e-29 | 4 |
amnion | 1.32e-26 | 7 |
somatic layer of lateral plate mesoderm | 2.88e-23 | 8 |
egg chorion | 1.96e-22 | 3 |
organ component layer | 7.55e-14 | 66 |
pancreas | 1.83e-11 | 10 |
seminal vesicle | 2.84e-08 | 1 |
seminal fluid secreting gland | 2.84e-08 | 1 |
internal genitalia | 4.42e-07 | 25 |
umbilical cord | 6.21e-07 | 10 |
blastocyst | 6.21e-07 | 10 |
blastula | 6.21e-07 | 10 |
bilaminar disc | 6.21e-07 | 10 |
inner cell mass | 6.21e-07 | 10 |
cleaving embryo | 6.21e-07 | 10 |
connecting stalk | 6.21e-07 | 10 |
inner cell mass derived epiblast | 6.21e-07 | 10 |
extraembryonic mesoderm | 6.21e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 3.79e-08 | 1 |
meningioma | 3.79e-08 | 1 |