FFCP PHASE1:Hg19::chr20:44640803..44640826,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:44640803..44640826,+
|short_description=p3@MMP9
|description=CAGE_peak_3_at_MMP9_5end
|association_with_transcript=249bp_to_AK302530_5end
|EntrezGene=431...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4318 | |EntrezGene=4318 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7176 | |HGNC=7176 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z7V0 | |UniProt=B7Z7V0 | ||
|association_with_transcript=249bp_to_AK302530_5end | |||
|cluster_id=chr20:44640803..44640826,+ | |||
|coexpression_cluster_id=C71 | |||
|description=CAGE_peak_3_at_MMP9_5end | |||
|id=chr20:44640803..44640826,+ | |||
|ontology_enrichment_celltype=CL:0002009!7.79e-15!65;CL:0000557!4.92e-13!71;CL:0002194!1.47e-12!63;CL:0000576!1.47e-12!63;CL:0000040!1.47e-12!63;CL:0000559!1.47e-12!63;CL:0000766!7.92e-12!76;CL:0000839!9.92e-11!70;CL:0000235!4.03e-09!10;CL:0002057!5.40e-09!42;CL:0000763!2.17e-08!112;CL:0000049!2.17e-08!112;CL:0000860!3.76e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000235;2.25e-51;6!CL:0000473;2.85e-25;39!CL:0000234;2.85e-25;39!CL:0000775;2.15e-12;3!CL:0000766;2.06e-10;69!CL:0000860;2.66e-10;33!CL:0002057;2.66e-10;33!CL:0000244;2.85e-09;4!CL:0000731;2.85e-09;4!CL:0000763;3.04e-07;100!CL:0000738;3.36e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,2.26e-51,6;CL:0002009,1.08e-27,61;CL:0000473,3.94e-27,48;CL:0000234,3.94e-27,48;CL:0000766,1.40e-26,72;CL:0000557,5.05e-25,67;CL:0002194,7.55e-25,59;CL:0000576,7.55e-25,59;CL:0000040,7.55e-25,59;CL:0000559,7.55e-25,59;CL:0000839,5.32e-22,66;CL:0000763,2.87e-19,108;CL:0000049,2.87e-19,108;CL:0000738,1.01e-14,136;CL:0002031,6.53e-13,120;CL:0000775,2.15e-12,3;CL:0002032,5.50e-12,161;CL:0000837,5.50e-12,161;CL:0002087,1.13e-11,115;CL:0000037,2.30e-11,168;CL:0000988,1.23e-10,177;CL:0000244,2.79e-09,4;CL:0000731,2.79e-09,4;CL:0000860,9.48e-09,42;CL:0002057,9.48e-09,42 | |||
|ontology_enrichment_development_v019=UBERON:0006298;1.68e-09;1!CL:0000049;6.38e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.20e-13!112;UBERON:0002390!1.47e-13!102;UBERON:0003061!1.47e-13!102;UBERON:0002405!4.80e-11!115;UBERON:0002371!7.44e-11!80;UBERON:0001474!1.15e-09!86;UBERON:0004765!2.38e-07!101;UBERON:0001434!2.38e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000029;1.68e-09;1!UBERON:0001736;1.68e-09;1!UBERON:0000365;1.38e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.54e-22,76;UBERON:0001474,4.96e-20,82;UBERON:0002405,5.82e-20,93;UBERON:0004765,4.86e-18,90;UBERON:0002193,7.90e-17,108;UBERON:0002390,2.28e-16,98;UBERON:0003061,2.28e-16,98;UBERON:0001434,5.42e-16,100;UBERON:0003081,4.19e-10,203;UBERON:0002204,6.32e-10,167;UBERON:0000029,1.06e-09,1;UBERON:0001736,1.36e-09,1;UBERON:0006298,1.36e-09,1;UBERON:0000365,1.36e-07,5 | |||
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| ||
|short_description=p3@MMP9 | |||
}} | }} |
Latest revision as of 14:05, 16 September 2015
Short description: | p3@MMP9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MMP9_5end |
Coexpression cluster: | C71_Monocytederived_Macrophage_CD14_Dendritic_Osteoblast_leiomyoma_Prostate |
Association with transcript: | 249bp_to_AK302530_5end |
EntrezGene: | MMP9 |
HGNC: | 7176 |
UniProt: | B7Z7V0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 2.26e-51 | 6 |
macrophage dendritic cell progenitor | 1.08e-27 | 61 |
defensive cell | 3.94e-27 | 48 |
phagocyte | 3.94e-27 | 48 |
myeloid leukocyte | 1.40e-26 | 72 |
granulocyte monocyte progenitor cell | 5.05e-25 | 67 |
monopoietic cell | 7.55e-25 | 59 |
monocyte | 7.55e-25 | 59 |
monoblast | 7.55e-25 | 59 |
promonocyte | 7.55e-25 | 59 |
myeloid lineage restricted progenitor cell | 5.32e-22 | 66 |
myeloid cell | 2.87e-19 | 108 |
common myeloid progenitor | 2.87e-19 | 108 |
leukocyte | 1.01e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 6.53e-13 | 120 |
neutrophil | 2.15e-12 | 3 |
hematopoietic oligopotent progenitor cell | 5.50e-12 | 161 |
hematopoietic multipotent progenitor cell | 5.50e-12 | 161 |
nongranular leukocyte | 1.13e-11 | 115 |
hematopoietic stem cell | 2.30e-11 | 168 |
hematopoietic cell | 1.23e-10 | 177 |
transitional epithelial cell | 2.79e-09 | 4 |
urothelial cell | 2.79e-09 | 4 |
classical monocyte | 9.48e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.48e-09 | 42 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.54e-22 | 76 |
bone element | 4.96e-20 | 82 |
immune system | 5.82e-20 | 93 |
skeletal element | 4.86e-18 | 90 |
hemolymphoid system | 7.90e-17 | 108 |
hematopoietic system | 2.28e-16 | 98 |
blood island | 2.28e-16 | 98 |
skeletal system | 5.42e-16 | 100 |
lateral plate mesoderm | 4.19e-10 | 203 |
musculoskeletal system | 6.32e-10 | 167 |
lymph node | 1.06e-09 | 1 |
submandibular gland | 1.36e-09 | 1 |
submandibular gland primordium | 1.36e-09 | 1 |
urothelium | 1.36e-07 | 5 |