FFCP PHASE1:Hg19::chr4:16900533..16900584,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9079 | |EntrezGene=9079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6533 | |HGNC=6533 | ||
|TSSclassifier=strong | |||
|UniProt=O43679 | |UniProt=O43679 | ||
|association_with_transcript=-101bp_to_ENST00000304523_5end | |association_with_transcript=-101bp_to_ENST00000304523_5end | ||
|cluster_id=chr4:16900533..16900584,- | |||
|description=CAGE_peak_9_at_LDB2_5end | |description=CAGE_peak_9_at_LDB2_5end | ||
|id=chr4:16900533..16900584,- | |id=chr4:16900533..16900584,- | ||
|ontology_enrichment_celltype=CL:0000115!1.17e-10!35;CL:0002139!1.59e-09!24;CL:0002078!1.34e-07!44 | |ontology_enrichment_celltype=CL:0000115!1.17e-10!35;CL:0002139!1.59e-09!24;CL:0002078!1.34e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:0000115;1.15e-13;36!CL:0002139;1.91e-12;24!CL:0000071;3.81e-08;18!CL:0002078;7.90e-08;45!CL:0002618;8.00e-08;3!CL:0002188;6.11e-07;5 | |ontology_enrichment_celltype_v019=CL:0000115;1.15e-13;36!CL:0002139;1.91e-12;24!CL:0000071;3.81e-08;18!CL:0002078;7.90e-08;45!CL:0002618;8.00e-08;3!CL:0002188;6.11e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.06e-16,36;CL:0002078,2.64e-12,45;CL:0002139,2.74e-12,24;CL:0000213,1.94e-08,58;CL:0000215,1.94e-08,58;CL:0000071,4.57e-08,18;CL:0002546,4.57e-08,18;CL:0002618,7.47e-08,3;CL:0002188,3.97e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002546;3.81e-08;18!UBERON:0004872;6.45e-08;7 | |ontology_enrichment_development_v019=CL:0002546;3.81e-08;18!UBERON:0004872;6.45e-08;7 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.99e-41!115;UBERON:0001049!2.65e-14!57;UBERON:0005068!2.65e-14!57;UBERON:0006241!2.65e-14!57;UBERON:0007135!2.65e-14!57;UBERON:0003080!1.62e-13!42;UBERON:0001017!5.65e-13!82;UBERON:0002780!9.94e-13!41;UBERON:0001890!9.94e-13!41;UBERON:0006240!9.94e-13!41;UBERON:0005743!1.83e-12!86;UBERON:0004111!1.10e-11!241;UBERON:0000073!1.26e-11!94;UBERON:0001016!1.26e-11!94;UBERON:0000477!2.14e-11!286;UBERON:0002346!2.27e-11!90;UBERON:0002616!2.99e-11!59;UBERON:0000025!8.09e-11!194;UBERON:0001950!2.22e-10!20;UBERON:0002619!4.13e-10!22;UBERON:0003075!4.89e-10!86;UBERON:0007284!4.89e-10!86;UBERON:0000955!1.60e-09!69;UBERON:0006238!1.60e-09!69;UBERON:0000956!3.97e-09!25;UBERON:0000203!3.97e-09!25;UBERON:0001893!5.55e-09!34;UBERON:0002791!1.03e-08!33;UBERON:0002020!2.60e-08!34;UBERON:0003528!2.60e-08!34;UBERON:0001869!3.29e-08!32;UBERON:0003056!1.37e-07!61;UBERON:0003103!7.48e-07!69 | |ontology_enrichment_uberon=UBERON:0007023!3.99e-41!115;UBERON:0001049!2.65e-14!57;UBERON:0005068!2.65e-14!57;UBERON:0006241!2.65e-14!57;UBERON:0007135!2.65e-14!57;UBERON:0003080!1.62e-13!42;UBERON:0001017!5.65e-13!82;UBERON:0002780!9.94e-13!41;UBERON:0001890!9.94e-13!41;UBERON:0006240!9.94e-13!41;UBERON:0005743!1.83e-12!86;UBERON:0004111!1.10e-11!241;UBERON:0000073!1.26e-11!94;UBERON:0001016!1.26e-11!94;UBERON:0000477!2.14e-11!286;UBERON:0002346!2.27e-11!90;UBERON:0002616!2.99e-11!59;UBERON:0000025!8.09e-11!194;UBERON:0001950!2.22e-10!20;UBERON:0002619!4.13e-10!22;UBERON:0003075!4.89e-10!86;UBERON:0007284!4.89e-10!86;UBERON:0000955!1.60e-09!69;UBERON:0006238!1.60e-09!69;UBERON:0000956!3.97e-09!25;UBERON:0000203!3.97e-09!25;UBERON:0001893!5.55e-09!34;UBERON:0002791!1.03e-08!33;UBERON:0002020!2.60e-08!34;UBERON:0003528!2.60e-08!34;UBERON:0001869!3.29e-08!32;UBERON:0003056!1.37e-07!61;UBERON:0003103!7.48e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0003296;3.74e-08;4!UBERON:0010133;3.74e-08;4!UBERON:0004638;3.81e-08;18!UBERON:0001986;3.81e-08;18!UBERON:0004852;3.81e-08;18!UBERON:0003978;4.57e-08;3!UBERON:0000946;4.57e-08;3!UBERON:0004151;7.00e-08;3!UBERON:0007023;5.84e-07;114 | |ontology_enrichment_uberon_v019=UBERON:0003296;3.74e-08;4!UBERON:0010133;3.74e-08;4!UBERON:0004638;3.81e-08;18!UBERON:0001986;3.81e-08;18!UBERON:0004852;3.81e-08;18!UBERON:0003978;4.57e-08;3!UBERON:0000946;4.57e-08;3!UBERON:0004151;7.00e-08;3!UBERON:0007023;5.84e-07;114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.84e-25,114;UBERON:0003887,4.53e-10,12;UBERON:0004111,6.50e-10,240;UBERON:0000025,1.26e-08,192;UBERON:0003296,3.49e-08,4;UBERON:0010133,3.49e-08,4;UBERON:0003103,3.69e-08,68;UBERON:0004876,3.69e-08,11;UBERON:0003978,4.16e-08,3;UBERON:0009751,4.16e-08,3;UBERON:0000946,4.16e-08,3;UBERON:0002523,4.16e-08,3;UBERON:0005983,4.16e-08,3;UBERON:0002165,4.16e-08,3;UBERON:0002062,4.16e-08,3;UBERON:0007280,4.16e-08,3;UBERON:0004638,4.57e-08,18;UBERON:0001986,4.57e-08,18;UBERON:0004852,4.57e-08,18;UBERON:0004151,7.14e-08,3;UBERON:0000080,1.47e-07,9;UBERON:0002120,1.47e-07,9;UBERON:0004875,1.47e-07,9;UBERON:0005721,1.47e-07,9;UBERON:0005754,1.47e-07,9;UBERON:0007297,1.47e-07,9;UBERON:0000055,9.67e-07,68 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,1.18009283054671,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0,0,0,1.83370705696798,0,0,0,0,0,0,0,0,0.993812036833525,0,1.38856200643038,1.13061588384802,0.419499436209906,2.47606237746061,0,7.23566925674121,4.26919515224052,3.01248551488203,0.402829317109147,2.28081631715554,0,0,2.43042584364528,5.53658315361295,6.06229306090659,3.60356737546631,0,2.84779697870439,0.366403487860815,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0.560677600142307,0,0,0,0.134710672069688,0,0.302714855289863,0,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0.250237039743928,0,0.438977620880838,0.30648779579902,0,0,0,0.427114777637135,0.635795703478686,0.300091096084402,0.206105058476878,0.257640540045629,0.18611685633159,0.675105328965065,0.194874010322397,0.252433774244115,0.368199594569197,0.80823028409406,0,0.503760491138201,0,0,0,0,0,0.132529768321485,0,0,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.11971000087113,1.40241773803446,0,0,0,0,5.90789906681404,0,0,0,0,0,0,0,0,0,0,0,0,1.29929802984966,0,0.761016608938393,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0.797814349754612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0,0.112085143993527,1.18218456121156,0.431255149719035,0.256686072559497,1.01637849688985,1.30139853857622,1.54657762555539,0,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0,0,0.35142424497814,0,0,0,1.32845119707087,0.553107505625109,0.173767228936166,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0,0,0,0.154209693802656,0,0.492762936082855,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,0,0,3.4120015221269,1.53084334748864,1.94324324491925,3.08454505380579,0.270946437543853,0,0,0,0,0,0,0,0,0,2.57602529119306,0.0915694648183434,0.247528499761764,0,0,0,0.386682873168488,0,0,0,0,0,0,0.445160178233687,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0.424216295861138,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0.354761064070598,0,0.987884678879706,0,0.699869440489966,0,0,0,3.10674542563371,0,0,0,0,0.507447609232169,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,9.08350711485743,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,2.56472854656027,0,0,0.969332746095218,0.371072392647405,0,0,0,7.24999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.87754158861589,0,0,3.53971189117467,0,0,0,0,0.31900115973192,0,0,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0.216388639742091,1.99052386215701,1.32686346755009,1.83309043480088,0,0,0,0.269604531922708,3.21031058919516,0.234264445725339,0,0,0,0.394584402849391,4.83962864194656,0,0.947798694427319,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.969890164884194,0,0.677942222341597,0,0.19871461170299,0.633107959558787,0,0,1.49417096317547,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0.684526894459965,0,0,0,3.90995361781156,8.24977526442061,10.7680953686522,0.399358000997982,1.28767814440971,5.35611497860494,4.43410918412393,0,0,0,0,0,0,0,0,0.544813624446302,0.160753148465019,0,0,0,0,0.607495566580247,0,1.89133697518076,1.94081976099493,0,0,0,7.14695326373367,2.64836788146173,0,0,0,0,0,0,0.340776043570843,0.113312091520126,1.46552233678082,0,0,0.39669780522807,0,0,9.93122936879561,7.8602152549833,7.87054205159671,0.992332043623902,0,0,0,2.1760712134779,2.7575888342497,1.83807346058077,3.27872630709804,0,0.886068179966986,1.34228891392159,1.502291168478,1.14681839138014,0.443716206147409,0.310482014706917,0,0,0,0,0,0,0,0.298509605773748,0.233713309847224,0,0,0.251567901752575,0,0.228840068396924,0.151230923763239,0.310874401165561,0.295710299979268,0,0,0,0.829412415681711,0,0,0.300515217994437,0,0,0,0.107410557042488,0.464033759878494,0,0,1.37358282073117,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24432592536558,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0.127894371303652,0,0,0,0.169732529954025,0.212574920101683,1.11542187833102,0,0.318004350653419,0,0,0,0,0.449604575675217,2.8339315265117,0.798169295285756,0.615349092722265,0.756215088665154,0.553258019713743,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,1.88025820873143,0.40341013740704,0,0,0,0,0.202612753855184,1.56215619722769,0.413373593002368,0.317079050969534,1.09394961803644,0,1.98484471355718,0.703484977438482,0,1.60710550763486,1.68141861109412,1.21393120847326,2.27662191351298,1.68534503309014,0,0,0.135939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| ||
|short_description=p9@LDB2 | |short_description=p9@LDB2 | ||
}} | }} |
Latest revision as of 15:41, 16 September 2015
Short description: | p9@LDB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LDB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -101bp_to_ENST00000304523_5end |
EntrezGene: | LDB2 |
HGNC: | 6533 |
UniProt: | O43679 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.06e-16 | 36 |
meso-epithelial cell | 2.64e-12 | 45 |
endothelial cell of vascular tree | 2.74e-12 | 24 |
lining cell | 1.94e-08 | 58 |
barrier cell | 1.94e-08 | 58 |
blood vessel endothelial cell | 4.57e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.57e-08 | 18 |
endothelial cell of umbilical vein | 7.47e-08 | 3 |
glomerular endothelial cell | 3.97e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.84e-25 | 114 |
intraembryonic coelom | 4.53e-10 | 12 |
anatomical conduit | 6.50e-10 | 240 |
tube | 1.26e-08 | 192 |
gland of diencephalon | 3.49e-08 | 4 |
neuroendocrine gland | 3.49e-08 | 4 |
compound organ | 3.69e-08 | 68 |
urogenital ridge | 3.69e-08 | 11 |
valve | 4.16e-08 | 3 |
cardiac mesenchyme | 4.16e-08 | 3 |
cardial valve | 4.16e-08 | 3 |
tunica intima | 4.16e-08 | 3 |
heart layer | 4.16e-08 | 3 |
endocardium | 4.16e-08 | 3 |
endocardial cushion | 4.16e-08 | 3 |
presumptive endocardium | 4.16e-08 | 3 |
blood vessel endothelium | 4.57e-08 | 18 |
endothelium | 4.57e-08 | 18 |
cardiovascular system endothelium | 4.57e-08 | 18 |
cardiac chamber | 7.14e-08 | 3 |
mesonephros | 1.47e-07 | 9 |
pronephros | 1.47e-07 | 9 |
nephrogenic cord | 1.47e-07 | 9 |
pronephric mesoderm | 1.47e-07 | 9 |
rostral part of nephrogenic cord | 1.47e-07 | 9 |
presumptive pronephric mesoderm | 1.47e-07 | 9 |
vessel | 9.67e-07 | 68 |