FFCP PHASE1:Hg19::chr8:126557025..126557029,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:126557025..126557029,+ | |||
|coexpression_cluster_id=C513 | |coexpression_cluster_id=C513 | ||
|description=CAGE_peak_at_chr8:126557025..126557029,+ | |description=CAGE_peak_at_chr8:126557025..126557029,+ | ||
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|ontology_enrichment_celltype=CL:0002076!4.67e-19!43;CL:0000066!1.08e-17!254;CL:0002202!2.68e-15!9;CL:0002632!2.68e-15!9;CL:0002368!6.08e-14!13;CL:0000223!7.82e-13!59;CL:0002328!1.24e-12!3;CL:0000068!2.05e-12!3;CL:0000069!2.05e-12!3;CL:0000307!2.05e-12!3;CL:0000377!2.05e-12!3;CL:0002251!2.23e-10!21;CL:0000076!7.06e-09!62;CL:0000575!1.10e-08!2 | |ontology_enrichment_celltype=CL:0002076!4.67e-19!43;CL:0000066!1.08e-17!254;CL:0002202!2.68e-15!9;CL:0002632!2.68e-15!9;CL:0002368!6.08e-14!13;CL:0000223!7.82e-13!59;CL:0002328!1.24e-12!3;CL:0000068!2.05e-12!3;CL:0000069!2.05e-12!3;CL:0000307!2.05e-12!3;CL:0000377!2.05e-12!3;CL:0002251!2.23e-10!21;CL:0000076!7.06e-09!62;CL:0000575!1.10e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002202;1.56e-35;9!CL:0002632;1.56e-35;9!CL:0000307;1.82e-27;3!CL:0002328;2.55e-27;3!CL:0002368;8.95e-25;13!CL:0002076;2.57e-13;42!CL:0002253;3.70e-11;2!CL:0002251;1.51e-09;20 | |ontology_enrichment_celltype_v019=CL:0002202;1.56e-35;9!CL:0002632;1.56e-35;9!CL:0000307;1.82e-27;3!CL:0002328;2.55e-27;3!CL:0002368;8.95e-25;13!CL:0002076;2.57e-13;42!CL:0002253;3.70e-11;2!CL:0002251;1.51e-09;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002202,1.25e-35,9;CL:0002632,1.25e-35,9;CL:0000068,1.82e-27,3;CL:0000069,1.82e-27,3;CL:0002328,1.82e-27,3;CL:0000307,1.82e-27,3;CL:0000377,1.82e-27,3;CL:0002368,7.68e-25,13;CL:0002076,7.67e-23,42;CL:0000223,1.66e-16,58;CL:0002253,4.52e-11,2;CL:0002251,1.67e-09,20;CL:0000066,2.35e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000377;1.82e-27;3!UBERON:0008814;2.35e-11;2!UBERON:0010056;2.35e-11;2!CL:0000223;2.45e-09;58 | |ontology_enrichment_development_v019=CL:0000377;1.82e-27;3!UBERON:0008814;2.35e-11;2!UBERON:0010056;2.35e-11;2!CL:0000223;2.45e-09;58 | ||
|ontology_enrichment_disease=DOID:1749!6.02e-21!14;DOID:305!6.53e-13!106;DOID:0050687!4.38e-10!143;DOID:299!4.24e-08!25;DOID:162!1.46e-07!235;DOID:14566!2.91e-07!239 | |ontology_enrichment_disease=DOID:1749!6.02e-21!14;DOID:305!6.53e-13!106;DOID:0050687!4.38e-10!143;DOID:299!4.24e-08!25;DOID:162!1.46e-07!235;DOID:14566!2.91e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.57e-13;14 | |ontology_enrichment_disease_v019=DOID:1749;1.57e-13;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,1.60e-13,14 | |||
|ontology_enrichment_uberon=UBERON:0000344!1.38e-14!12;UBERON:0004815!1.24e-12!3;UBERON:0002031!1.24e-12!3;UBERON:0003729!1.86e-12!5;UBERON:0007196!1.42e-09!14;UBERON:0001558!1.42e-09!14;UBERON:0002185!1.42e-09!4;UBERON:0003343!2.05e-09!4;UBERON:0004785!2.05e-09!4;UBERON:0000485!3.06e-07!9 | |ontology_enrichment_uberon=UBERON:0000344!1.38e-14!12;UBERON:0004815!1.24e-12!3;UBERON:0002031!1.24e-12!3;UBERON:0003729!1.86e-12!5;UBERON:0007196!1.42e-09!14;UBERON:0001558!1.42e-09!14;UBERON:0002185!1.42e-09!4;UBERON:0003343!2.05e-09!4;UBERON:0004785!2.05e-09!4;UBERON:0000485!3.06e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.55e-27;3!UBERON:0002031;2.55e-27;3!UBERON:0000485;5.53e-26;7!UBERON:0007196;1.54e-21;15!UBERON:0001558;1.54e-21;15!UBERON:0002185;7.82e-17;5!UBERON:0003126;2.24e-12;7!UBERON:0001005;2.24e-12;7!UBERON:0006562;3.70e-11;2!UBERON:0005178;8.63e-10;34!UBERON:0002224;8.63e-10;34!UBERON:0000072;6.48e-09;37!UBERON:0005181;2.38e-08;35!UBERON:0001723;5.36e-08;3!UBERON:0001033;5.36e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0004815;2.55e-27;3!UBERON:0002031;2.55e-27;3!UBERON:0000485;5.53e-26;7!UBERON:0007196;1.54e-21;15!UBERON:0001558;1.54e-21;15!UBERON:0002185;7.82e-17;5!UBERON:0003126;2.24e-12;7!UBERON:0001005;2.24e-12;7!UBERON:0006562;3.70e-11;2!UBERON:0005178;8.63e-10;34!UBERON:0002224;8.63e-10;34!UBERON:0000072;6.48e-09;37!UBERON:0005181;2.38e-08;35!UBERON:0001723;5.36e-08;3!UBERON:0001033;5.36e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.82e-27,3;UBERON:0002031,1.82e-27,3;UBERON:0007196,1.35e-21,15;UBERON:0001558,1.35e-21,15;UBERON:0000485,2.11e-20,9;UBERON:0002185,6.40e-17,5;UBERON:0003126,2.24e-12,7;UBERON:0001005,2.24e-12,7;UBERON:0000072,9.65e-11,47;UBERON:0005178,9.38e-10,34;UBERON:0002224,9.38e-10,34;UBERON:0005181,1.74e-09,35;UBERON:0000065,2.31e-09,54;UBERON:0008947,9.23e-09,38;UBERON:0003258,9.23e-09,38;UBERON:0006562,3.76e-08,11;UBERON:0001723,5.54e-08,3;UBERON:0001033,5.54e-08,3;UBERON:0010056,5.54e-08,3;UBERON:0004921,6.52e-08,118;UBERON:0001004,7.62e-07,74 | |||
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| ||
|short_description=p@chr8:126557025..126557029,+ | |short_description=p@chr8:126557025..126557029,+ | ||
}} | }} |
Latest revision as of 14:46, 31 July 2015
Short description: | p@chr8:126557025..126557029, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:126557025..126557029, + |
Coexpression cluster: | C513_Tracheal_Bronchial_squamous_bronchial_Small_oral_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 1.25e-35 | 9 |
epithelial cell of lower respiratory tract | 1.25e-35 | 9 |
duct epithelial cell | 1.82e-27 | 3 |
branched duct epithelial cell | 1.82e-27 | 3 |
bronchial epithelial cell | 1.82e-27 | 3 |
tracheal epithelial cell | 1.82e-27 | 3 |
tracheoblast | 1.82e-27 | 3 |
respiratory epithelial cell | 7.68e-25 | 13 |
endo-epithelial cell | 7.67e-23 | 42 |
endodermal cell | 1.66e-16 | 58 |
epithelial cell of large intestine | 4.52e-11 | 2 |
epithelial cell of alimentary canal | 1.67e-09 | 20 |
epithelial cell | 2.35e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.82e-27 | 3 |
epithelium of bronchus | 1.82e-27 | 3 |
tracheobronchial tree | 1.35e-21 | 15 |
lower respiratory tract | 1.35e-21 | 15 |
simple columnar epithelium | 2.11e-20 | 9 |
bronchus | 6.40e-17 | 5 |
trachea | 2.24e-12 | 7 |
respiratory airway | 2.24e-12 | 7 |
segment of respiratory tract | 9.65e-11 | 47 |
thoracic cavity element | 9.38e-10 | 34 |
thoracic cavity | 9.38e-10 | 34 |
thoracic segment organ | 1.74e-09 | 35 |
respiratory tract | 2.31e-09 | 54 |
respiratory primordium | 9.23e-09 | 38 |
endoderm of foregut | 9.23e-09 | 38 |
pharynx | 3.76e-08 | 11 |
tongue | 5.54e-08 | 3 |
gustatory system | 5.54e-08 | 3 |
future tongue | 5.54e-08 | 3 |
subdivision of digestive tract | 6.52e-08 | 118 |
respiratory system | 7.62e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.60e-13 | 14 |