FFCP PHASE1:Hg19::chr3:47032417..47032436,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:47032417..47032436,+ | |||
|coexpression_cluster_id=C2741 | |coexpression_cluster_id=C2741 | ||
|description=CAGE_peak_at_chr3:47032417..47032436,+ | |description=CAGE_peak_at_chr3:47032417..47032436,+ | ||
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|ontology_enrichment_celltype=CL:0002057!1.75e-46!42;CL:0000860!6.67e-43!45;CL:0000738!3.89e-40!140;CL:0000557!3.34e-38!71;CL:0000766!1.11e-37!76;CL:0000839!3.20e-36!70;CL:0002009!4.39e-34!65;CL:0002031!5.60e-34!124;CL:0000988!3.81e-33!182;CL:0002194!9.21e-33!63;CL:0000576!9.21e-33!63;CL:0000040!9.21e-33!63;CL:0000559!9.21e-33!63;CL:0002032!1.11e-30!165;CL:0000837!1.11e-30!165;CL:0000037!1.40e-30!172;CL:0000566!1.40e-30!172;CL:0000763!5.25e-30!112;CL:0000049!5.25e-30!112;CL:0002087!6.85e-30!119;CL:0000453!2.33e-10!5;CL:0000134!6.34e-09!358;CL:0000080!6.87e-09!6;CL:0002320!1.51e-08!365;CL:0000990!1.98e-08!8;CL:0000945!1.49e-07!24;CL:0000826!1.49e-07!24;CL:0000219!3.13e-07!390;CL:0000451!7.72e-07!10 | |ontology_enrichment_celltype=CL:0002057!1.75e-46!42;CL:0000860!6.67e-43!45;CL:0000738!3.89e-40!140;CL:0000557!3.34e-38!71;CL:0000766!1.11e-37!76;CL:0000839!3.20e-36!70;CL:0002009!4.39e-34!65;CL:0002031!5.60e-34!124;CL:0000988!3.81e-33!182;CL:0002194!9.21e-33!63;CL:0000576!9.21e-33!63;CL:0000040!9.21e-33!63;CL:0000559!9.21e-33!63;CL:0002032!1.11e-30!165;CL:0000837!1.11e-30!165;CL:0000037!1.40e-30!172;CL:0000566!1.40e-30!172;CL:0000763!5.25e-30!112;CL:0000049!5.25e-30!112;CL:0002087!6.85e-30!119;CL:0000453!2.33e-10!5;CL:0000134!6.34e-09!358;CL:0000080!6.87e-09!6;CL:0002320!1.51e-08!365;CL:0000990!1.98e-08!8;CL:0000945!1.49e-07!24;CL:0000826!1.49e-07!24;CL:0000219!3.13e-07!390;CL:0000451!7.72e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.05e-31;33!CL:0002057;3.05e-31;33!CL:0000473;6.29e-21;39!CL:0000234;6.29e-21;39!CL:0000766;8.66e-21;69!CL:0000576;1.75e-19;48!CL:0002393;1.57e-14;6!CL:0002397;1.57e-14;6!CL:0002087;1.02e-11;104!CL:0000097;1.63e-08;5!CL:0000738;2.56e-08;136!CL:0000763;1.85e-07;100 | |ontology_enrichment_celltype_v019=CL:0000860;3.05e-31;33!CL:0002057;3.05e-31;33!CL:0000473;6.29e-21;39!CL:0000234;6.29e-21;39!CL:0000766;8.66e-21;69!CL:0000576;1.75e-19;48!CL:0002393;1.57e-14;6!CL:0002397;1.57e-14;6!CL:0002087;1.02e-11;104!CL:0000097;1.63e-08;5!CL:0000738;2.56e-08;136!CL:0000763;1.85e-07;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.36e-42,42;CL:0002057,5.36e-42,42;CL:0000473,1.74e-36,48;CL:0000234,1.74e-36,48;CL:0000839,1.10e-33,66;CL:0000557,3.75e-33,67;CL:0000766,1.02e-30,72;CL:0002194,9.14e-29,59;CL:0000576,9.14e-29,59;CL:0000040,9.14e-29,59;CL:0000559,9.14e-29,59;CL:0002031,1.41e-28,120;CL:0002009,9.08e-28,61;CL:0000738,6.41e-25,136;CL:0002087,7.46e-24,115;CL:0002032,1.21e-20,161;CL:0000837,1.21e-20,161;CL:0000763,9.22e-20,108;CL:0000049,9.22e-20,108;CL:0000037,1.14e-19,168;CL:0000988,1.56e-18,177;CL:0002393,6.08e-10,9;CL:0002397,6.08e-10,9;CL:0000097,1.79e-08,5;CL:0002028,1.79e-08,5;CL:0000134,8.47e-08,354;CL:0002320,1.38e-07,361;CL:0000219,7.70e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-27;42 | |ontology_enrichment_development_v019=CL:0002057;1.50e-27;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.87e-40!102;UBERON:0003061!1.87e-40!102;UBERON:0002193!5.79e-36!112;UBERON:0002371!5.30e-33!80;UBERON:0001474!3.89e-30!86;UBERON:0002405!5.25e-27!115;UBERON:0004765!3.46e-26!101;UBERON:0001434!3.46e-26!101;UBERON:0003081!6.37e-15!216;UBERON:0002204!1.35e-12!167;UBERON:0002384!4.90e-08!375;UBERON:0004177!3.80e-07!7 | |ontology_enrichment_uberon=UBERON:0002390!1.87e-40!102;UBERON:0003061!1.87e-40!102;UBERON:0002193!5.79e-36!112;UBERON:0002371!5.30e-33!80;UBERON:0001474!3.89e-30!86;UBERON:0002405!5.25e-27!115;UBERON:0004765!3.46e-26!101;UBERON:0001434!3.46e-26!101;UBERON:0003081!6.37e-15!216;UBERON:0002204!1.35e-12!167;UBERON:0002384!4.90e-08!375;UBERON:0004177!3.80e-07!7 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.37e-29,76;UBERON:0001474,1.00e-26,82;UBERON:0002405,1.49e-26,93;UBERON:0002390,4.39e-25,98;UBERON:0003061,4.39e-25,98;UBERON:0004765,3.68e-24,90;UBERON:0002193,1.51e-22,108;UBERON:0001434,1.59e-21,100;UBERON:0002204,6.30e-12,167;UBERON:0003081,8.41e-11,203;UBERON:0002384,2.68e-07,371 | |||
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| ||
|short_description=p@chr3:47032417..47032436,+ | |short_description=p@chr3:47032417..47032436,+ | ||
}} | }} |
Latest revision as of 21:30, 29 July 2015
Short description: | p@chr3:47032417..47032436, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:47032417..47032436, + |
Coexpression cluster: | C2741_B_CD14_splenic_immature_b_Mast_xeroderma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.36e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.36e-42 | 42 |
defensive cell | 1.74e-36 | 48 |
phagocyte | 1.74e-36 | 48 |
myeloid lineage restricted progenitor cell | 1.10e-33 | 66 |
granulocyte monocyte progenitor cell | 3.75e-33 | 67 |
myeloid leukocyte | 1.02e-30 | 72 |
monopoietic cell | 9.14e-29 | 59 |
monocyte | 9.14e-29 | 59 |
monoblast | 9.14e-29 | 59 |
promonocyte | 9.14e-29 | 59 |
hematopoietic lineage restricted progenitor cell | 1.41e-28 | 120 |
macrophage dendritic cell progenitor | 9.08e-28 | 61 |
leukocyte | 6.41e-25 | 136 |
nongranular leukocyte | 7.46e-24 | 115 |
hematopoietic oligopotent progenitor cell | 1.21e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.21e-20 | 161 |
myeloid cell | 9.22e-20 | 108 |
common myeloid progenitor | 9.22e-20 | 108 |
hematopoietic stem cell | 1.14e-19 | 168 |
hematopoietic cell | 1.56e-18 | 177 |
intermediate monocyte | 6.08e-10 | 9 |
CD14-positive, CD16-positive monocyte | 6.08e-10 | 9 |
mast cell | 1.79e-08 | 5 |
basophil mast progenitor cell | 1.79e-08 | 5 |
mesenchymal cell | 8.47e-08 | 354 |
connective tissue cell | 1.38e-07 | 361 |
motile cell | 7.70e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.37e-29 | 76 |
bone element | 1.00e-26 | 82 |
immune system | 1.49e-26 | 93 |
hematopoietic system | 4.39e-25 | 98 |
blood island | 4.39e-25 | 98 |
skeletal element | 3.68e-24 | 90 |
hemolymphoid system | 1.51e-22 | 108 |
skeletal system | 1.59e-21 | 100 |
musculoskeletal system | 6.30e-12 | 167 |
lateral plate mesoderm | 8.41e-11 | 203 |
connective tissue | 2.68e-07 | 371 |