FFCP PHASE1:Hg19::chr6:12958098..12958105,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221692 | |EntrezGene=221692 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20990 | |HGNC=20990 | ||
|TSSclassifier=strong | |||
|UniProt=E9PD08,Q9C0D0 | |UniProt=E9PD08,Q9C0D0 | ||
|association_with_transcript=-108bp_to_ENST00000379345,ENST00000457702_5end | |association_with_transcript=-108bp_to_ENST00000379345,ENST00000457702_5end | ||
|cluster_id=chr6:12958098..12958105,+ | |||
|description=CAGE_peak_30_at_PHACTR1_5end | |description=CAGE_peak_30_at_PHACTR1_5end | ||
|id=chr6:12958098..12958105,+ | |id=chr6:12958098..12958105,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002188;5.15e-21;5!CL:1000746;1.91e-15;7!CL:1000612;1.91e-15;7!CL:0002681;1.33e-09;12!CL:0002584;1.33e-09;12!CL:1000449;5.93e-08;15!CL:1000497;3.58e-07;17!CL:0002518;3.58e-07;17 | |ontology_enrichment_celltype_v019=CL:0002188;5.15e-21;5!CL:1000746;1.91e-15;7!CL:1000612;1.91e-15;7!CL:0002681;1.33e-09;12!CL:0002584;1.33e-09;12!CL:1000449;5.93e-08;15!CL:1000497;3.58e-07;17!CL:0002518;3.58e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0002188,5.15e-21,5;CL:1000746,1.91e-15,7;CL:1000612,1.91e-15,7;CL:0002681,1.33e-09,12;CL:0002584,1.33e-09,12;CL:1000449,5.93e-08,15;CL:1000497,3.58e-07,17;CL:0002518,3.58e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0004140;9.37e-99;1!UBERON:0004872;1.65e-15;7 | |ontology_enrichment_development_v019=UBERON:0004140;9.37e-99;1!UBERON:0004872;1.65e-15;7 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!3.82e-31!86;UBERON:0007284!3.82e-31!86;UBERON:0001049!4.46e-31!57;UBERON:0005068!4.46e-31!57;UBERON:0006241!4.46e-31!57;UBERON:0007135!4.46e-31!57;UBERON:0002346!6.92e-31!90;UBERON:0007023!2.88e-29!115;UBERON:0002020!4.39e-29!34;UBERON:0003528!4.39e-29!34;UBERON:0001893!5.70e-29!34;UBERON:0002791!1.55e-27!33;UBERON:0002780!2.28e-27!41;UBERON:0001890!2.28e-27!41;UBERON:0006240!2.28e-27!41;UBERON:0003080!1.51e-26!42;UBERON:0001869!7.03e-26!32;UBERON:0003056!1.06e-25!61;UBERON:0002616!1.33e-25!59;UBERON:0005743!3.05e-24!86;UBERON:0000073!1.45e-23!94;UBERON:0001016!1.45e-23!94;UBERON:0002619!1.69e-23!22;UBERON:0001017!8.58e-23!82;UBERON:0000955!7.72e-22!69;UBERON:0006238!7.72e-22!69;UBERON:0000956!3.31e-20!25;UBERON:0000203!3.31e-20!25;UBERON:0001950!5.87e-20!20;UBERON:0000033!1.31e-16!123;UBERON:0000924!7.98e-16!173;UBERON:0006601!7.98e-16!173;UBERON:0004121!1.36e-15!169;UBERON:0000153!2.47e-15!129;UBERON:0007811!2.47e-15!129;UBERON:0000025!1.62e-10!194;UBERON:0002308!2.04e-10!9;UBERON:0000125!2.04e-10!9;UBERON:0002298!4.95e-09!8;UBERON:0001871!5.58e-09!7;UBERON:0000200!1.11e-08!6;UBERON:0000477!1.28e-08!286;UBERON:0004111!1.91e-08!241;UBERON:0001872!1.02e-07!5;UBERON:0002420!1.42e-07!9;UBERON:0007245!1.42e-07!9;UBERON:0010009!1.42e-07!9;UBERON:0010011!1.42e-07!9;UBERON:0000454!1.42e-07!9;UBERON:0000988!3.23e-07!3;UBERON:0000064!3.30e-07!219;UBERON:0009663!3.56e-07!7;UBERON:0002771!3.67e-07!3;UBERON:0000483!4.63e-07!309;UBERON:0000349!5.98e-07!5;UBERON:0000119!7.15e-07!312 | |ontology_enrichment_uberon=UBERON:0003075!3.82e-31!86;UBERON:0007284!3.82e-31!86;UBERON:0001049!4.46e-31!57;UBERON:0005068!4.46e-31!57;UBERON:0006241!4.46e-31!57;UBERON:0007135!4.46e-31!57;UBERON:0002346!6.92e-31!90;UBERON:0007023!2.88e-29!115;UBERON:0002020!4.39e-29!34;UBERON:0003528!4.39e-29!34;UBERON:0001893!5.70e-29!34;UBERON:0002791!1.55e-27!33;UBERON:0002780!2.28e-27!41;UBERON:0001890!2.28e-27!41;UBERON:0006240!2.28e-27!41;UBERON:0003080!1.51e-26!42;UBERON:0001869!7.03e-26!32;UBERON:0003056!1.06e-25!61;UBERON:0002616!1.33e-25!59;UBERON:0005743!3.05e-24!86;UBERON:0000073!1.45e-23!94;UBERON:0001016!1.45e-23!94;UBERON:0002619!1.69e-23!22;UBERON:0001017!8.58e-23!82;UBERON:0000955!7.72e-22!69;UBERON:0006238!7.72e-22!69;UBERON:0000956!3.31e-20!25;UBERON:0000203!3.31e-20!25;UBERON:0001950!5.87e-20!20;UBERON:0000033!1.31e-16!123;UBERON:0000924!7.98e-16!173;UBERON:0006601!7.98e-16!173;UBERON:0004121!1.36e-15!169;UBERON:0000153!2.47e-15!129;UBERON:0007811!2.47e-15!129;UBERON:0000025!1.62e-10!194;UBERON:0002308!2.04e-10!9;UBERON:0000125!2.04e-10!9;UBERON:0002298!4.95e-09!8;UBERON:0001871!5.58e-09!7;UBERON:0000200!1.11e-08!6;UBERON:0000477!1.28e-08!286;UBERON:0004111!1.91e-08!241;UBERON:0001872!1.02e-07!5;UBERON:0002420!1.42e-07!9;UBERON:0007245!1.42e-07!9;UBERON:0010009!1.42e-07!9;UBERON:0010011!1.42e-07!9;UBERON:0000454!1.42e-07!9;UBERON:0000988!3.23e-07!3;UBERON:0000064!3.30e-07!219;UBERON:0009663!3.56e-07!7;UBERON:0002771!3.67e-07!3;UBERON:0000483!4.63e-07!309;UBERON:0000349!5.98e-07!5;UBERON:0000119!7.15e-07!312 | ||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.91e-15;7!UBERON:0001229;1.91e-15;7!UBERON:0003103;1.64e-10;61!UBERON:0001225;1.33e-09;12!UBERON:0008987;1.33e-09;12!UBERON:0001851;5.93e-08;15!UBERON:0006555;5.93e-08;15!UBERON:0000353;5.93e-08;15!UBERON:0004819;5.93e-08;15!UBERON:0001285;5.93e-08;15!UBERON:0007684;5.93e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0000074;1.91e-15;7!UBERON:0001229;1.91e-15;7!UBERON:0003103;1.64e-10;61!UBERON:0001225;1.33e-09;12!UBERON:0008987;1.33e-09;12!UBERON:0001851;5.93e-08;15!UBERON:0006555;5.93e-08;15!UBERON:0000353;5.93e-08;15!UBERON:0004819;5.93e-08;15!UBERON:0001285;5.93e-08;15!UBERON:0007684;5.93e-08;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.91e-15,7;UBERON:0000074,1.91e-15,7;UBERON:0001229,1.91e-15,7;UBERON:0001230,1.91e-15,7;UBERON:0003220,1.91e-15,7;UBERON:0005749,1.91e-15,7;UBERON:0004199,1.91e-15,7;UBERON:0004209,1.91e-15,7;UBERON:0004198,1.91e-15,7;UBERON:0005103,1.07e-13,8;UBERON:0000083,1.07e-13,8;UBERON:0009201,1.07e-13,8;UBERON:0006553,1.07e-13,8;UBERON:0003074,1.07e-13,8;UBERON:0003060,1.07e-13,8;UBERON:0000080,2.45e-12,9;UBERON:0002120,2.45e-12,9;UBERON:0004875,2.45e-12,9;UBERON:0005721,2.45e-12,9;UBERON:0005754,2.45e-12,9;UBERON:0007297,2.45e-12,9;UBERON:0004876,2.37e-10,11;UBERON:0001225,1.33e-09,12;UBERON:0008987,1.33e-09,12;UBERON:0003887,1.33e-09,12;UBERON:0001851,5.93e-08,15;UBERON:0004211,5.93e-08,15;UBERON:0009773,5.93e-08,15;UBERON:0000353,5.93e-08,15;UBERON:0001231,5.93e-08,15;UBERON:0001285,5.93e-08,15;UBERON:0007684,5.93e-08,15;UBERON:0004208,5.93e-08,15;UBERON:0006555,1.54e-07,16;UBERON:0004819,1.54e-07,16;UBERON:0003103,4.47e-07,68 | |||
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| ||
|short_description=p30@PHACTR1 | |short_description=p30@PHACTR1 | ||
}} | }} |
Latest revision as of 16:25, 24 September 2015
Short description: | p30@PHACTR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_30_at_PHACTR1_5end |
Coexpression cluster: | NA |
Association with transcript: | -108bp_to_ENST00000379345, ENST00000457702_5end |
EntrezGene: | PHACTR1 |
HGNC: | 20990 |
UniProt: | E9PD08Q9C0D0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 5.15e-21 | 5 |
glomerular cell | 1.91e-15 | 7 |
kidney corpuscule cell | 1.91e-15 | 7 |
kidney cortical cell | 1.33e-09 | 12 |
renal cortical epithelial cell | 1.33e-09 | 12 |
epithelial cell of nephron | 5.93e-08 | 15 |
kidney cell | 3.58e-07 | 17 |
kidney epithelial cell | 3.58e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.91e-15 | 7 |
renal glomerulus | 1.91e-15 | 7 |
renal corpuscle | 1.91e-15 | 7 |
glomerular capsule | 1.91e-15 | 7 |
metanephric mesenchyme | 1.91e-15 | 7 |
glomerular tuft | 1.91e-15 | 7 |
S-shaped body | 1.91e-15 | 7 |
renal vesicle | 1.91e-15 | 7 |
comma-shaped body | 1.91e-15 | 7 |
mesonephric epithelium | 1.07e-13 | 8 |
mesonephric tubule | 1.07e-13 | 8 |
nephric duct | 1.07e-13 | 8 |
renal duct | 1.07e-13 | 8 |
mesonephric duct | 1.07e-13 | 8 |
pronephric duct | 1.07e-13 | 8 |
mesonephros | 2.45e-12 | 9 |
pronephros | 2.45e-12 | 9 |
nephrogenic cord | 2.45e-12 | 9 |
pronephric mesoderm | 2.45e-12 | 9 |
rostral part of nephrogenic cord | 2.45e-12 | 9 |
presumptive pronephric mesoderm | 2.45e-12 | 9 |
urogenital ridge | 2.37e-10 | 11 |
cortex of kidney | 1.33e-09 | 12 |
renal parenchyma | 1.33e-09 | 12 |
intraembryonic coelom | 1.33e-09 | 12 |
cortex | 5.93e-08 | 15 |
nephron epithelium | 5.93e-08 | 15 |
renal tubule | 5.93e-08 | 15 |
parenchyma | 5.93e-08 | 15 |
nephron tubule | 5.93e-08 | 15 |
nephron | 5.93e-08 | 15 |
uriniferous tubule | 5.93e-08 | 15 |
nephrogenic mesenchyme | 5.93e-08 | 15 |
excretory tube | 1.54e-07 | 16 |
kidney epithelium | 1.54e-07 | 16 |
compound organ | 4.47e-07 | 68 |