FF:10732-110B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005548 | |||
|accession_numbers=CAGE;DRX007979;DRR008851;DRZ000276;DRZ001661;DRZ011626;DRZ013011 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.77!57.69!PAX8;;chr12:66218255..66218304,+!p3@HMGA2!1.54!88.35!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!1.35!21.38!ZNF560;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.17!CREB3L1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.89!CREB5;;chr6:45390025..45390076,+!p2@RUNX2!1.24!38.93!RUNX2;;chr6:45390300..45390335,+!p4@RUNX2!1.23!24.81!RUNX2;;chr8:67525443..67525459,-!p2@MYBL1!1.22!23.40!MYBL1;;chr17:46703687..46703740,-!p1@HOXB9!1.17!13.92!HOXB9;;chr2:200322654..200322707,-!p2@SATB2!1.16!19.36!SATB2;;chr1:44513995..44514031,+!p1@KLF17!1.16!13.31!KLF17;;chr3:69811882..69811898,+!p6@MITF!1.10!11.70!MITF;;chr6:45390002..45390023,+!p6@RUNX2!1.09!19.77!RUNX2;;chr3:69811858..69811881,+!p5@MITF!1.08!11.09!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.06!13.72!NFATC2;;chr6:45390077..45390105,+!p9@RUNX2!1.06!13.51!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.72!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.04!10.09!ZNF323;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.40!TWIST1;;chr8:23540441..23540466,-!p1@NKX3-1!1.01!18.96!NKX3-1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.53!FOXD1;;chr6:45390269..45390298,+!p5@RUNX2!1.01!15.33!RUNX2;;chr12:54380404..54380433,+!p3@HOXC10!1.01!9.28!HOXC10;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.72!PAWR;;chr14:62162285..62162296,+!p3@HIF1A!0.97!44.98!HIF1A;;chr12:26277817..26277863,-!p2@BHLHE41!0.97!11.50!BHLHE41;;chr7:27169801..27169844,-!p2@HOXA4!0.96!8.07!HOXA4;;chr9:16705069..16705086,-!p3@BNC2!0.96!8.07!BNC2;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.24!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.95!14.12!DRAP1;;chr17:46622229..46622257,-!p6@HOXB2!0.95!9.28!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.94!164.59!SNAI2;;chr12:80084303..80084332,-!p1@PAWR!0.94!47.40!PAWR;;chr19:22817119..22817145,+!p1@ZNF492!0.93!12.71!ZNF492;;chr20:55204351..55204377,+!p1@TFAP2C!0.93!9.68!TFAP2C;;chr6:45390399..45390418,+!p15@RUNX2!0.93!7.46!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.91!7.66!GLIS1;;chr12:26277956..26277980,-!p1@BHLHE41!0.90!26.22!BHLHE41;;chr15:83953397..83953425,-!p1@BNC1!0.90!8.07!BNC1;;chr6:28321971..28321995,-!p1@ZNF323!0.90!6.86!ZNF323;;chr8:67525473..67525518,-!p1@MYBL1!0.88!15.53!MYBL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!59.50!PPP1R13L;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.06!HMGA2;;chr12:80084737..80084763,-!p3@PAWR!0.87!25.01!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.87!8.07!HOXC4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.25!IKZF3;;chr14:62162258..62162269,+!p2@HIF1A!0.85!61.92!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.03!DRAP1;;chr5:137804405..137804444,+!p3@EGR1!0.85!7.46!EGR1;;chr7:96654026..96654061,-!p2@DLX5!0.85!6.05!DLX5;;chr5:158526917..158526932,-!p1@EBF1!0.84!15.33!EBF1;;chr19:22193731..22193751,-!p1@ZNF208!0.84!5.85!ZNF208;;chr7:28725740..28725778,+!p1@CREB5!0.83!55.27!CREB5;;chr5:72744594..72744609,-!p1@FOXD1!0.82!27.63!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.65!HOXA9;;chr7:96654133..96654150,-!p1@DLX5!0.82!5.65!DLX5;;chr19:22605136..22605154,-!p1@ZNF98!0.82!5.65!ZNF98;;chr2:10183651..10183713,+!p1@KLF11!0.81!42.96!KLF11;;chr6:10412600..10412637,-!p1@TFAP2A!0.81!9.48!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.81!8.67!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.97!FOXP1;;chr2:102091566..102091581,-!p1@RFX8!0.80!5.24!RFX8;;chr1:119530493..119530572,-!p1@TBX15!0.80!5.24!TBX15;;chr17:35294075..35294102,+!p1@ENST00000559335!0.80!5.24!LHX1;;chr20:39317868..39317884,-!p1@MAFB!0.79!67.37!MAFB;;chr11:46299539..46299620,+!p2@CREB3L1!0.79!9.08!CREB3L1;;chr5:72743793..72743855,-!p4@FOXD1!0.78!6.05!FOXD1;;chr12:54380036..54380091,+!p4@HOXC10!0.78!5.04!HOXC10;;chr1:25291475..25291511,-!p2@RUNX3!0.78!5.04!RUNX3;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.04!HOXD8;;chr17:45928443..45928473,-!p2@SP6!0.78!5.04!SP6;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.84!HEYL;;chr12:26277929..26277955,-!p3@BHLHE41!0.76!7.06!BHLHE41;;chr9:4300050..4300118,-!p1@GLIS3!0.75!33.28!GLIS3;;chr20:42543441..42543497,+!p1@TOX2!0.75!22.79!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.75!19.36!SIX1;;chr12:80084279..80084293,-!p8@PAWR!0.75!8.07!PAWR;;chr8:40755333..40755352,-!p1@ZMAT4!0.75!4.64!ZMAT4;;chr2:28615716..28615733,+!p1@FOSL2!0.74!240.23!FOSL2;;chr2:176973498..176973524,+!p1@HOXD10!0.74!4.44!HOXD10;;chr5:2751762..2751784,-!p1@IRX2!0.74!4.44!IRX2;;chr12:80084167..80084197,-!p5@PAWR!0.73!11.09!PAWR;;chr3:141087144..141087170,+!p11@ZBTB38!0.73!5.65!ZBTB38;;chr14:62203595..62203676,+!p4@HIF1A!0.72!8.47!HIF1A;;chr3:25469724..25469773,+!p1@RARB!0.72!6.45!RARB;;chr3:157823517..157823562,-!p1@SHOX2!0.72!4.64!SHOX2;;chr17:46703942..46703964,-!p4@HOXB9!0.72!4.24!HOXB9;;chr12:80085120..80085156,-!p14@PAWR!0.72!4.24!PAWR;;chr19:47523058..47523114,+!p1@NPAS1!0.72!4.24!NPAS1;;chr20:42295745..42295765,+!p1@MYBL2!0.71!77.05!MYBL2;;chr16:54320675..54320715,-!p1@IRX3!0.71!9.68!IRX3;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.47!HMGA2;;chr15:80696703..80696754,+!p1@ARNT2!0.71!5.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| |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.77!57.69!PAX8;;chr12:66218255..66218304,+!p3@HMGA2!1.54!88.35!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!1.35!21.38!ZNF560;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.17!CREB3L1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.89!CREB5;;chr6:45390025..45390076,+!p2@RUNX2!1.24!38.93!RUNX2;;chr6:45390300..45390335,+!p4@RUNX2!1.23!24.81!RUNX2;;chr8:67525443..67525459,-!p2@MYBL1!1.22!23.40!MYBL1;;chr17:46703687..46703740,-!p1@HOXB9!1.17!13.92!HOXB9;;chr2:200322654..200322707,-!p2@SATB2!1.16!19.36!SATB2;;chr1:44513995..44514031,+!p1@KLF17!1.16!13.31!KLF17;;chr3:69811882..69811898,+!p6@MITF!1.10!11.70!MITF;;chr6:45390002..45390023,+!p6@RUNX2!1.09!19.77!RUNX2;;chr3:69811858..69811881,+!p5@MITF!1.08!11.09!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.06!13.72!NFATC2;;chr6:45390077..45390105,+!p9@RUNX2!1.06!13.51!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.72!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.04!10.09!ZNF323;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.40!TWIST1;;chr8:23540441..23540466,-!p1@NKX3-1!1.01!18.96!NKX3-1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.53!FOXD1;;chr6:45390269..45390298,+!p5@RUNX2!1.01!15.33!RUNX2;;chr12:54380404..54380433,+!p3@HOXC10!1.01!9.28!HOXC10;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.72!PAWR;;chr14:62162285..62162296,+!p3@HIF1A!0.97!44.98!HIF1A;;chr12:26277817..26277863,-!p2@BHLHE41!0.97!11.50!BHLHE41;;chr7:27169801..27169844,-!p2@HOXA4!0.96!8.07!HOXA4;;chr9:16705069..16705086,-!p3@BNC2!0.96!8.07!BNC2;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.24!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.95!14.12!DRAP1;;chr17:46622229..46622257,-!p6@HOXB2!0.95!9.28!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.94!164.59!SNAI2;;chr12:80084303..80084332,-!p1@PAWR!0.94!47.40!PAWR;;chr19:22817119..22817145,+!p1@ZNF492!0.93!12.71!ZNF492;;chr20:55204351..55204377,+!p1@TFAP2C!0.93!9.68!TFAP2C;;chr6:45390399..45390418,+!p15@RUNX2!0.93!7.46!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.91!7.66!GLIS1;;chr12:26277956..26277980,-!p1@BHLHE41!0.90!26.22!BHLHE41;;chr15:83953397..83953425,-!p1@BNC1!0.90!8.07!BNC1;;chr6:28321971..28321995,-!p1@ZNF323!0.90!6.86!ZNF323;;chr8:67525473..67525518,-!p1@MYBL1!0.88!15.53!MYBL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!59.50!PPP1R13L;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.06!HMGA2;;chr12:80084737..80084763,-!p3@PAWR!0.87!25.01!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.87!8.07!HOXC4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.25!IKZF3;;chr14:62162258..62162269,+!p2@HIF1A!0.85!61.92!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.03!DRAP1;;chr5:137804405..137804444,+!p3@EGR1!0.85!7.46!EGR1;;chr7:96654026..96654061,-!p2@DLX5!0.85!6.05!DLX5;;chr5:158526917..158526932,-!p1@EBF1!0.84!15.33!EBF1;;chr19:22193731..22193751,-!p1@ZNF208!0.84!5.85!ZNF208;;chr7:28725740..28725778,+!p1@CREB5!0.83!55.27!CREB5;;chr5:72744594..72744609,-!p1@FOXD1!0.82!27.63!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.65!HOXA9;;chr7:96654133..96654150,-!p1@DLX5!0.82!5.65!DLX5;;chr19:22605136..22605154,-!p1@ZNF98!0.82!5.65!ZNF98;;chr2:10183651..10183713,+!p1@KLF11!0.81!42.96!KLF11;;chr6:10412600..10412637,-!p1@TFAP2A!0.81!9.48!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.81!8.67!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.97!FOXP1;;chr2:102091566..102091581,-!p1@RFX8!0.80!5.24!RFX8;;chr1:119530493..119530572,-!p1@TBX15!0.80!5.24!TBX15;;chr17:35294075..35294102,+!p1@ENST00000559335!0.80!5.24!LHX1;;chr20:39317868..39317884,-!p1@MAFB!0.79!67.37!MAFB;;chr11:46299539..46299620,+!p2@CREB3L1!0.79!9.08!CREB3L1;;chr5:72743793..72743855,-!p4@FOXD1!0.78!6.05!FOXD1;;chr12:54380036..54380091,+!p4@HOXC10!0.78!5.04!HOXC10;;chr1:25291475..25291511,-!p2@RUNX3!0.78!5.04!RUNX3;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.04!HOXD8;;chr17:45928443..45928473,-!p2@SP6!0.78!5.04!SP6;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.84!HEYL;;chr12:26277929..26277955,-!p3@BHLHE41!0.76!7.06!BHLHE41;;chr9:4300050..4300118,-!p1@GLIS3!0.75!33.28!GLIS3;;chr20:42543441..42543497,+!p1@TOX2!0.75!22.79!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.75!19.36!SIX1;;chr12:80084279..80084293,-!p8@PAWR!0.75!8.07!PAWR;;chr8:40755333..40755352,-!p1@ZMAT4!0.75!4.64!ZMAT4;;chr2:28615716..28615733,+!p1@FOSL2!0.74!240.23!FOSL2;;chr2:176973498..176973524,+!p1@HOXD10!0.74!4.44!HOXD10;;chr5:2751762..2751784,-!p1@IRX2!0.74!4.44!IRX2;;chr12:80084167..80084197,-!p5@PAWR!0.73!11.09!PAWR;;chr3:141087144..141087170,+!p11@ZBTB38!0.73!5.65!ZBTB38;;chr14:62203595..62203676,+!p4@HIF1A!0.72!8.47!HIF1A;;chr3:25469724..25469773,+!p1@RARB!0.72!6.45!RARB;;chr3:157823517..157823562,-!p1@SHOX2!0.72!4.64!SHOX2;;chr17:46703942..46703964,-!p4@HOXB9!0.72!4.24!HOXB9;;chr12:80085120..80085156,-!p14@PAWR!0.72!4.24!PAWR;;chr19:47523058..47523114,+!p1@NPAS1!0.72!4.24!NPAS1;;chr20:42295745..42295765,+!p1@MYBL2!0.71!77.05!MYBL2;;chr16:54320675..54320715,-!p1@IRX3!0.71!9.68!IRX3;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.47!HMGA2;;chr15:80696703..80696754,+!p1@ARNT2!0.71!5.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0.61!ZNF323;;chr6:28322041..28322050,-!p14@ZNF323!0.21!0.61!ZNF323;;chr6:99282438..99282457,+!p2@POU3F2!0.21!0.61!POU3F2;;chr7:137565269..137565282,-!p16@CREB3L2!0.21!0.61!CREB3L2;;chr7:27170359..27170381,-!p1@HOXA4!0.21!0.61!HOXA4;;chr7:27205043..27205050,-!p5@HOXA9!0.21!0.61!HOXA9;;chr7:27205089..27205096,-!p4@HOXA9!0.21!0.61!HOXA9;;chr7:96635277..96635301,+!p7@DLX6!0.21!0.61!DLX6;;chr8:123793688..123793703,+!p12@ZHX2!0.21!0.61!ZHX2;;chr8:123793708..123793723,+!p6@ZHX2!0.21!0.61!ZHX2;;chr8:144512897..144512903,-!p1@MAFA!0.21!0.61!MAFA;;chr8:57123898..57123909,-!p3@PLAG1!0.21!0.61!PLAG1;;chr8:67525467..67525472,-!p4@MYBL1!0.21!0.61!MYBL1;;chr8:77593448..77593471,+!p2@ZFHX4!0.21!0.61!ZFHX4;;chr14:89029904..89029917,+!p5@ZC3H14!0.21!0.61!ZC3H14;;chr15:61521667..61521685,-!p7@RORA!0.21!0.61!RORA;;chr15:67391010..67391046,+!p13@SMAD3!0.21!0.61!SMAD3;;chr16:51185318..51185348,-!p2@SALL1!0.21!0.61!SALL1;;chr16:51185363..51185381,-!p4@SALL1!0.21!0.61!SALL1;;chr16:54320302..54320317,-!p10@IRX3!0.21!0.61!IRX3;;chr17:41739283..41739297,-!p1@MEOX1!0.21!0.61!MEOX1;;chr17:42295682..42295731,-!p17@UBTF!0.21!0.61!UBTF;;chr17:46687935..46687950,-!p3@HOXB7!0.21!0.61!HOXB7;;chr17:46703240..46703257,-!p6@HOXB9!0.21!0.61!HOXB9;;chr17:46703436..46703460,-!p7@HOXB9!0.21!0.61!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.21!0.61!HOXB13;;chr17:48072574..48072597,-!p1@DLX3!0.21!0.61!DLX3;;chr17:8027418..8027432,-!p1@HES7!0.21!0.61!HES7;;chr18:22931979..22931992,-!p3@ZNF521!0.21!0.61!ZNF521;;chr18:22932004..22932021,-!p2@ZNF521!0.21!0.61!ZNF521;;chr18:22932173..22932180,-!p7@ZNF521!0.21!0.61!ZNF521;;chr19:10416315..10416333,-!p1@ZGLP1!0.21!0.61!ZGLP1;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!0.21!0.61!ZNF676;;chr19:31840168..31840186,-!p6@TSHZ3!0.21!0.61!TSHZ3;;chr19:31840699..31840720,-!p7@TSHZ3!0.21!0.61!TSHZ3;;chr19:44716768..44716775,+!p2@ZNF227!0.21!0.61!ZNF227;;chr19:57752123..57752134,+!p5@ZNF805!0.21!0.61!ZNF805;;chr19:57791947..57791956,+!p7@ZNF460!0.21!0.61!ZNF460;;chr19:57791966..57791973,+!p8@ZNF460!0.21!0.61!ZNF460;;chr19:57946675..57946680,+!p2@ZNF749!0.21!0.61!ZNF749;;chr1:119530857..119530884,-!p4@TBX15!0.21!0.61!TBX15;;chr1:197886461..197886558,+!p1@LHX9!0.21!0.61!LHX9;;chr1:37945588..37945604,+!p3@ZC3H12A!0.21!0.61!ZC3H12A;;chr1:47779845..47779848,-!p3@STIL,p8@TAL1!0.21!0.61!TAL1;;chr1:8585919..8585943,-!p18@RERE!0.21!0.61!RERE;;chr20:51589732..51589769,+!p3@TSHZ2!0.21!0.61!TSHZ2;;chr20:52210553..52210568,-!p7@ZNF217!0.21!0.61!ZNF217;;chr20:55205825..55205847,+!p2@TFAP2C!0.21!0.61!TFAP2C;;chr9:73029044..73029056,-!p10@KLF9!0.21!0.61!KLF9;;chr22:29196511..29196541,-!p1@XBP1!0.20!161.36!XBP1;;chr19:19303731..19303783,+!p1@RFXANK!0.20!33.68!RFXANK;;chr19:53606636..53606692,-!p1@ZNF160!0.20!25.62!ZNF160;;chr16:29817789..29817838,+!p2@MAZ!0.20!18.76!MAZ;;chr1:202777592..202777616,-!p2@KDM5B!0.20!14.93!KDM5B;;chr1:53019059..53019176,-!p2@ZCCHC11!0.20!12.30!ZCCHC11;;chr16:89284104..89284150,+!p1@ZNF778!0.20!9.48!ZNF778;;chr6:33285505..33285529,-!p1@ZBTB22!0.20!9.08!ZBTB22;;chr19:9546227..9546257,-!p2@ZNF266!0.20!6.66!ZNF266;;chr16:2059797..2059837,-!p1@ZNF598!0.20!5.04!ZNF598;;chr3:44771092..44771160,+!p1@ZNF501!0.20!5.04!ZNF501;;chr19:38210622..38210681,-!p1@ZNF607!0.20!4.64!ZNF607;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!0.20!4.44!ZNF670;;chr16:2059754..2059777,-!p2@ZNF598!0.20!4.24!ZNF598;;chr19:11071652..11071682,+!p3@SMARCA4!0.20!4.24!SMARCA4;;chr1:42800848..42800859,-!p2@FOXJ3!0.20!3.23!FOXJ3;;chr19:52674853..52674892,-!p2@ZNF836!0.20!3.03!ZNF836;;chr9:109625401..109625458,+!p1@ZNF462!0.20!3.03!ZNF462;;chr6:12012536..12012554,+!p4@HIVEP1!0.20!2.62!HIVEP1;;chr3:14989050..14989069,+!p2@NR2C2!0.20!2.62!NR2C2;;chr10:51572339..51572376,+!p4@NCOA4!0.20!2.42!NCOA4;; | ||
Line 37: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10732-110B3 | |id=FF:10732-110B3 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100400 | |is_a=EFO:0002091;;FF:0000210;;FF:0100400 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11856 | |||
|library_id_phase_based=2:CNhs11856 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10732 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10732 | |||
|name=pagetoid sarcoma cell line:Hs 925.T | |name=pagetoid sarcoma cell line:Hs 925.T | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11856,LSID830,release010,COMPLETED | |profile_hcage=CNhs11856,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 62: | Line 77: | ||
|rna_weight_ug=50.42019 | |rna_weight_ug=50.42019 | ||
|sample_age=58 | |sample_age=58 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-7677 | |sample_cell_catalog=CRL-7677 | ||
|sample_cell_line=Hs 925.T | |sample_cell_line=Hs 925.T | ||
Line 83: | Line 99: | ||
|top_motifs=HIF1A:2.10319958271;NKX3-1:1.71079580563;PAX4:1.22211574347;ATF6:1.18126229056;HOX{A4,D4}:1.17800940195;TOPORS:1.14126292358;GFI1:1.11983098654;PITX1..3:1.10890462677;PPARG:1.0451800397;ELK1,4_GABP{A,B1}:1.00265453323;DBP:0.981019179789;POU3F1..4:0.975862852472;EVI1:0.912564458502;NKX2-1,4:0.890868498022;HOXA9_MEIS1:0.885676629962;EN1,2:0.883886290131;ZNF143:0.804801289463;AHR_ARNT_ARNT2:0.757144307883;FOXP1:0.745271187923;NR6A1:0.740401219812;NKX2-3_NKX2-5:0.697789711335;UFEwm:0.683571373511;HOX{A5,B5}:0.668255860186;IKZF2:0.646151573846;TFDP1:0.614001443768;NFY{A,B,C}:0.577184443767;AIRE:0.542045362406;XBP1:0.538998092064;TAL1_TCF{3,4,12}:0.474022825737;bHLH_family:0.466208641949;ZIC1..3:0.456811107487;GTF2A1,2:0.429041611828;SOX17:0.421021722465;TEAD1:0.411348235294;MYBL2:0.37896600512;ZNF384:0.373970944797;E2F1..5:0.367659297558;STAT5{A,B}:0.348622006507;ZBTB16:0.348162410453;GFI1B:0.31394103943;BACH2:0.295900869882;VSX1,2:0.290406222336;PAX3,7:0.267355257357;TEF:0.247137018916;SRF:0.228824120434;NFIX:0.204514941537;MYB:0.198934967176;IKZF1:0.196797540606;TFAP2B:0.186816095795;STAT1,3:0.18510673459;STAT2,4,6:0.179584477408;MTF1:0.169589691098;NKX3-2:0.159323270043;ONECUT1,2:0.155465305351;FOS_FOS{B,L1}_JUN{B,D}:0.15409575551;ZNF148:0.150566071416;ADNP_IRX_SIX_ZHX:0.144863949068;POU5F1:0.140248389203;NRF1:0.13799645858;ZFP161:0.125467281904;NFE2:0.123184225989;HIC1:0.112603687697;PAX5:0.111684340752;NFKB1_REL_RELA:0.111237604275;PRDM1:0.104435255611;POU1F1:0.0995697972482;SP1:0.0957454880951;XCPE1{core}:0.0955000385464;RXR{A,B,G}:0.0760800172933;ZNF238:0.0664123261601;HLF:0.0619028439462;BREu{core}:0.0574504093383;MTE{core}:0.0397873521098;GLI1..3:0.0393361546561;ZNF423:0.0129317838006;FOSL2:0.00129498585933;AR:-0.0099037373975;RFX1:-0.0138856418958;MYFfamily:-0.0394794453042;NANOG{mouse}:-0.0456447906652;HES1:-0.0461639554314;HBP1_HMGB_SSRP1_UBTF:-0.0468349425543;FOXA2:-0.0474038992162;ATF4:-0.0569571037081;RUNX1..3:-0.0652457293307;FOXD3:-0.0868037922847;RXRA_VDR{dimer}:-0.0882840786422;ALX4:-0.0970632489954;POU6F1:-0.114065729606;MZF1:-0.114891096731;MAFB:-0.11888244363;ATF5_CREB3:-0.14307085513;HMGA1,2:-0.145812757415;NFE2L2:-0.145893741409;EBF1:-0.150636887954;NFE2L1:-0.160064256861;MED-1{core}:-0.16679331626;LHX3,4:-0.181719784752;ALX1:-0.186038022163;KLF4:-0.194804291606;EGR1..3:-0.20645981173;CREB1:-0.211427032436;TBP:-0.214296463297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.21897202067;PAX8:-0.224300472012;JUN:-0.227840805517;SMAD1..7,9:-0.234327379091;HOX{A6,A7,B6,B7}:-0.249612971825;GTF2I:-0.258134222478;TLX1..3_NFIC{dimer}:-0.261326515825;SOX{8,9,10}:-0.262805492311;ARID5B:-0.26411569438;NR1H4:-0.274798394491;TFCP2:-0.289969054771;PAX2:-0.292819368077;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.293283454368;TBX4,5:-0.294853288034;FOXM1:-0.299512267589;ZBTB6:-0.299924686646;HNF1A:-0.3011050472;NKX6-1,2:-0.301509468453;NR5A1,2:-0.302165383287;MEF2{A,B,C,D}:-0.302233642656;MAZ:-0.312342755827;FOXN1:-0.322413838943;CDX1,2,4:-0.325346750766;HSF1,2:-0.347985443827;ELF1,2,4:-0.371426221681;HAND1,2:-0.371470405438;PATZ1:-0.378466232287;ATF2:-0.383308133811;CUX2:-0.385753906749;REST:-0.398735893011;CEBPA,B_DDIT3:-0.412065487529;SPI1:-0.436415643078;PDX1:-0.46078408471;IRF1,2:-0.46453613273;FOXL1:-0.477195540168;GATA6:-0.480057245366;EP300:-0.481560740832;PRRX1,2:-0.490479879044;TP53:-0.51034829983;RORA:-0.518178896485;TFAP4:-0.522339790613;POU2F1..3:-0.527888324206;LMO2:-0.534864957282;RBPJ:-0.537314380142;GCM1,2:-0.5396380816;CDC5L:-0.541845405104;ETS1,2:-0.542479588153;TFAP2{A,C}:-0.561273849073;DMAP1_NCOR{1,2}_SMARC:-0.580087289648;ZEB1:-0.583889461747;OCT4_SOX2{dimer}:-0.594210466867;YY1:-0.599065132455;LEF1_TCF7_TCF7L1,2:-0.60468004985;NFATC1..3:-0.630588645623;SPZ1:-0.633526165434;IRF7:-0.642506058466;NANOG:-0.651428309387;TLX2:-0.659555011179;CRX:-0.70596732794;FOX{F1,F2,J1}:-0.706189254743;HNF4A_NR2F1,2:-0.707137015473;SPIB:-0.712123455775;SOX2:-0.718469993585;GATA4:-0.720928369364;RFX2..5_RFXANK_RFXAP:-0.75423201534;NFIL3:-0.758834635552;NHLH1,2:-0.79422762111;PAX1,9:-0.820126115539;NR3C1:-0.823071393896;BPTF:-0.83630861948;SNAI1..3:-0.846196038555;SREBF1,2:-0.856470415385;T:-0.879713094017;FOXP3:-0.88591068494;PAX6:-0.886869467986;RREB1:-0.895969968298;FOX{D1,D2}:-0.909122260751;HMX1:-0.918148436862;MYOD1:-0.918717667066;SOX5:-0.946873426706;GZF1:-0.977263992096;NKX2-2,8:-0.994047540189;ESRRA:-1.00370527681;ESR1:-1.00740918957;PBX1:-1.04901816725;TGIF1:-1.05054521454;FOXQ1:-1.19773283518;FOXO1,3,4:-1.40869839092;FOX{I1,J2}:-2.60214621306 | |top_motifs=HIF1A:2.10319958271;NKX3-1:1.71079580563;PAX4:1.22211574347;ATF6:1.18126229056;HOX{A4,D4}:1.17800940195;TOPORS:1.14126292358;GFI1:1.11983098654;PITX1..3:1.10890462677;PPARG:1.0451800397;ELK1,4_GABP{A,B1}:1.00265453323;DBP:0.981019179789;POU3F1..4:0.975862852472;EVI1:0.912564458502;NKX2-1,4:0.890868498022;HOXA9_MEIS1:0.885676629962;EN1,2:0.883886290131;ZNF143:0.804801289463;AHR_ARNT_ARNT2:0.757144307883;FOXP1:0.745271187923;NR6A1:0.740401219812;NKX2-3_NKX2-5:0.697789711335;UFEwm:0.683571373511;HOX{A5,B5}:0.668255860186;IKZF2:0.646151573846;TFDP1:0.614001443768;NFY{A,B,C}:0.577184443767;AIRE:0.542045362406;XBP1:0.538998092064;TAL1_TCF{3,4,12}:0.474022825737;bHLH_family:0.466208641949;ZIC1..3:0.456811107487;GTF2A1,2:0.429041611828;SOX17:0.421021722465;TEAD1:0.411348235294;MYBL2:0.37896600512;ZNF384:0.373970944797;E2F1..5:0.367659297558;STAT5{A,B}:0.348622006507;ZBTB16:0.348162410453;GFI1B:0.31394103943;BACH2:0.295900869882;VSX1,2:0.290406222336;PAX3,7:0.267355257357;TEF:0.247137018916;SRF:0.228824120434;NFIX:0.204514941537;MYB:0.198934967176;IKZF1:0.196797540606;TFAP2B:0.186816095795;STAT1,3:0.18510673459;STAT2,4,6:0.179584477408;MTF1:0.169589691098;NKX3-2:0.159323270043;ONECUT1,2:0.155465305351;FOS_FOS{B,L1}_JUN{B,D}:0.15409575551;ZNF148:0.150566071416;ADNP_IRX_SIX_ZHX:0.144863949068;POU5F1:0.140248389203;NRF1:0.13799645858;ZFP161:0.125467281904;NFE2:0.123184225989;HIC1:0.112603687697;PAX5:0.111684340752;NFKB1_REL_RELA:0.111237604275;PRDM1:0.104435255611;POU1F1:0.0995697972482;SP1:0.0957454880951;XCPE1{core}:0.0955000385464;RXR{A,B,G}:0.0760800172933;ZNF238:0.0664123261601;HLF:0.0619028439462;BREu{core}:0.0574504093383;MTE{core}:0.0397873521098;GLI1..3:0.0393361546561;ZNF423:0.0129317838006;FOSL2:0.00129498585933;AR:-0.0099037373975;RFX1:-0.0138856418958;MYFfamily:-0.0394794453042;NANOG{mouse}:-0.0456447906652;HES1:-0.0461639554314;HBP1_HMGB_SSRP1_UBTF:-0.0468349425543;FOXA2:-0.0474038992162;ATF4:-0.0569571037081;RUNX1..3:-0.0652457293307;FOXD3:-0.0868037922847;RXRA_VDR{dimer}:-0.0882840786422;ALX4:-0.0970632489954;POU6F1:-0.114065729606;MZF1:-0.114891096731;MAFB:-0.11888244363;ATF5_CREB3:-0.14307085513;HMGA1,2:-0.145812757415;NFE2L2:-0.145893741409;EBF1:-0.150636887954;NFE2L1:-0.160064256861;MED-1{core}:-0.16679331626;LHX3,4:-0.181719784752;ALX1:-0.186038022163;KLF4:-0.194804291606;EGR1..3:-0.20645981173;CREB1:-0.211427032436;TBP:-0.214296463297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.21897202067;PAX8:-0.224300472012;JUN:-0.227840805517;SMAD1..7,9:-0.234327379091;HOX{A6,A7,B6,B7}:-0.249612971825;GTF2I:-0.258134222478;TLX1..3_NFIC{dimer}:-0.261326515825;SOX{8,9,10}:-0.262805492311;ARID5B:-0.26411569438;NR1H4:-0.274798394491;TFCP2:-0.289969054771;PAX2:-0.292819368077;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.293283454368;TBX4,5:-0.294853288034;FOXM1:-0.299512267589;ZBTB6:-0.299924686646;HNF1A:-0.3011050472;NKX6-1,2:-0.301509468453;NR5A1,2:-0.302165383287;MEF2{A,B,C,D}:-0.302233642656;MAZ:-0.312342755827;FOXN1:-0.322413838943;CDX1,2,4:-0.325346750766;HSF1,2:-0.347985443827;ELF1,2,4:-0.371426221681;HAND1,2:-0.371470405438;PATZ1:-0.378466232287;ATF2:-0.383308133811;CUX2:-0.385753906749;REST:-0.398735893011;CEBPA,B_DDIT3:-0.412065487529;SPI1:-0.436415643078;PDX1:-0.46078408471;IRF1,2:-0.46453613273;FOXL1:-0.477195540168;GATA6:-0.480057245366;EP300:-0.481560740832;PRRX1,2:-0.490479879044;TP53:-0.51034829983;RORA:-0.518178896485;TFAP4:-0.522339790613;POU2F1..3:-0.527888324206;LMO2:-0.534864957282;RBPJ:-0.537314380142;GCM1,2:-0.5396380816;CDC5L:-0.541845405104;ETS1,2:-0.542479588153;TFAP2{A,C}:-0.561273849073;DMAP1_NCOR{1,2}_SMARC:-0.580087289648;ZEB1:-0.583889461747;OCT4_SOX2{dimer}:-0.594210466867;YY1:-0.599065132455;LEF1_TCF7_TCF7L1,2:-0.60468004985;NFATC1..3:-0.630588645623;SPZ1:-0.633526165434;IRF7:-0.642506058466;NANOG:-0.651428309387;TLX2:-0.659555011179;CRX:-0.70596732794;FOX{F1,F2,J1}:-0.706189254743;HNF4A_NR2F1,2:-0.707137015473;SPIB:-0.712123455775;SOX2:-0.718469993585;GATA4:-0.720928369364;RFX2..5_RFXANK_RFXAP:-0.75423201534;NFIL3:-0.758834635552;NHLH1,2:-0.79422762111;PAX1,9:-0.820126115539;NR3C1:-0.823071393896;BPTF:-0.83630861948;SNAI1..3:-0.846196038555;SREBF1,2:-0.856470415385;T:-0.879713094017;FOXP3:-0.88591068494;PAX6:-0.886869467986;RREB1:-0.895969968298;FOX{D1,D2}:-0.909122260751;HMX1:-0.918148436862;MYOD1:-0.918717667066;SOX5:-0.946873426706;GZF1:-0.977263992096;NKX2-2,8:-0.994047540189;ESRRA:-1.00370527681;ESR1:-1.00740918957;PBX1:-1.04901816725;TGIF1:-1.05054521454;FOXQ1:-1.19773283518;FOXO1,3,4:-1.40869839092;FOX{I1,J2}:-2.60214621306 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10732-110B3;search_select_hide=table117:FF:10732-110B3 | |||
}} | }} |
Latest revision as of 15:02, 3 June 2020
Name: | pagetoid sarcoma cell line:Hs 925.T |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11856 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11856
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11856
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.39 |
10 | 10 | 0.805 |
100 | 100 | 0.298 |
101 | 101 | 0.4 |
102 | 102 | 0.649 |
103 | 103 | 0.671 |
104 | 104 | 0.725 |
105 | 105 | 0.0401 |
106 | 106 | 0.0959 |
107 | 107 | 0.665 |
108 | 108 | 0.221 |
109 | 109 | 0.442 |
11 | 11 | 0.822 |
110 | 110 | 0.963 |
111 | 111 | 0.204 |
112 | 112 | 0.468 |
113 | 113 | 0.105 |
114 | 114 | 0.997 |
115 | 115 | 0.669 |
116 | 116 | 0.542 |
117 | 117 | 0.988 |
118 | 118 | 0.418 |
119 | 119 | 0.761 |
12 | 12 | 0.258 |
120 | 120 | 0.989 |
121 | 121 | 0.607 |
122 | 122 | 0.383 |
123 | 123 | 0.34 |
124 | 124 | 0.272 |
125 | 125 | 0.348 |
126 | 126 | 0.621 |
127 | 127 | 0.619 |
128 | 128 | 0.282 |
129 | 129 | 0.398 |
13 | 13 | 0.801 |
130 | 130 | 0.276 |
131 | 131 | 0.0524 |
132 | 132 | 0.605 |
133 | 133 | 0.658 |
134 | 134 | 0.772 |
135 | 135 | 0.00784 |
136 | 136 | 0.0878 |
137 | 137 | 0.0969 |
138 | 138 | 0.691 |
139 | 139 | 0.945 |
14 | 14 | 0.0818 |
140 | 140 | 0.0665 |
141 | 141 | 0.135 |
142 | 142 | 0.757 |
143 | 143 | 0.296 |
144 | 144 | 0.698 |
145 | 145 | 0.964 |
146 | 146 | 0.286 |
147 | 147 | 0.446 |
148 | 148 | 0.14 |
149 | 149 | 0.228 |
15 | 15 | 0.983 |
150 | 150 | 0.238 |
151 | 151 | 0.93 |
152 | 152 | 0.182 |
153 | 153 | 0.908 |
154 | 154 | 0.249 |
155 | 155 | 0.427 |
156 | 156 | 0.998 |
157 | 157 | 0.715 |
158 | 158 | 0.204 |
159 | 159 | 0.108 |
16 | 16 | 0.696 |
160 | 160 | 0.155 |
161 | 161 | 0.745 |
162 | 162 | 0.315 |
163 | 163 | 0.852 |
164 | 164 | 0.93 |
165 | 165 | 0.464 |
166 | 166 | 0.626 |
167 | 167 | 0.305 |
168 | 168 | 0.193 |
169 | 169 | 0.0394 |
17 | 17 | 0.486 |
18 | 18 | 0.454 |
19 | 19 | 0.285 |
2 | 2 | 0.7 |
20 | 20 | 0.169 |
21 | 21 | 0.542 |
22 | 22 | 0.0341 |
23 | 23 | 0.558 |
24 | 24 | 0.623 |
25 | 25 | 0.51 |
26 | 26 | 0.42 |
27 | 27 | 0.0213 |
28 | 28 | 0.844 |
29 | 29 | 0.347 |
3 | 3 | 0.563 |
30 | 30 | 0.37 |
31 | 31 | 0.656 |
32 | 32 | 6.28583e-4 |
33 | 33 | 0.557 |
34 | 34 | 0.195 |
35 | 35 | 0.772 |
36 | 36 | 0.834 |
37 | 37 | 0.548 |
38 | 38 | 0.512 |
39 | 39 | 0.538 |
4 | 4 | 0.182 |
40 | 40 | 0.735 |
41 | 41 | 0.0434 |
42 | 42 | 0.776 |
43 | 43 | 0.254 |
44 | 44 | 0.694 |
45 | 45 | 0.392 |
46 | 46 | 0.916 |
47 | 47 | 0.978 |
48 | 48 | 0.665 |
49 | 49 | 0.628 |
5 | 5 | 0.176 |
50 | 50 | 0.877 |
51 | 51 | 0.548 |
52 | 52 | 0.154 |
53 | 53 | 0.714 |
54 | 54 | 0.899 |
55 | 55 | 0.666 |
56 | 56 | 0.851 |
57 | 57 | 0.999 |
58 | 58 | 0.195 |
59 | 59 | 0.362 |
6 | 6 | 0.344 |
60 | 60 | 0.277 |
61 | 61 | 0.858 |
62 | 62 | 0.367 |
63 | 63 | 0.886 |
64 | 64 | 0.703 |
65 | 65 | 0.422 |
66 | 66 | 6.48234e-5 |
67 | 67 | 0.091 |
68 | 68 | 0.949 |
69 | 69 | 0.817 |
7 | 7 | 0.121 |
70 | 70 | 0.241 |
71 | 71 | 0.821 |
72 | 72 | 0.143 |
73 | 73 | 0.396 |
74 | 74 | 0.914 |
75 | 75 | 0.432 |
76 | 76 | 0.762 |
77 | 77 | 0.563 |
78 | 78 | 0.589 |
79 | 79 | 0.515 |
8 | 8 | 0.998 |
80 | 80 | 0.0225 |
81 | 81 | 0.657 |
82 | 82 | 0.472 |
83 | 83 | 0.471 |
84 | 84 | 0.818 |
85 | 85 | 0.0316 |
86 | 86 | 0.845 |
87 | 87 | 0.117 |
88 | 88 | 0.636 |
89 | 89 | 0.172 |
9 | 9 | 0.00704 |
90 | 90 | 0.905 |
91 | 91 | 0.0917 |
92 | 92 | 0.833 |
93 | 93 | 0.992 |
94 | 94 | 0.759 |
95 | 95 | 0.996 |
96 | 96 | 0.656 |
97 | 97 | 0.416 |
98 | 98 | 0.0132 |
99 | 99 | 0.418 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11856
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100400 sarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA