FFCP PHASE1:Hg19::chr2:165477952..165477968,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:165477952..165477968,-
|short_description=p3@GRB14
|description=CAGE_peak_3_at_GRB14_5end
|association_with_transcript=19bp_to_ENST00000446413_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2888 | |EntrezGene=2888 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4565 | |HGNC=4565 | ||
|TSSclassifier=strong | |||
|UniProt=C9JD37 | |UniProt=C9JD37 | ||
|association_with_transcript=19bp_to_ENST00000446413_5end | |||
|cluster_id=chr2:165477952..165477968,- | |||
|description=CAGE_peak_3_at_GRB14_5end | |||
|id=chr2:165477952..165477968,- | |||
|ontology_enrichment_celltype=CL:0000066!2.78e-09!254;CL:0002321!1.60e-08!248;CL:0000359!2.84e-08!32;CL:0000220!5.02e-08!246;CL:0000071!3.79e-07!18;CL:0002546!3.79e-07!18;CL:1000497!4.61e-07!18;CL:0002518!4.61e-07!18;CL:1000507!9.40e-07!12;CL:1000494!9.40e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000507;8.64e-15;10!CL:1000494;8.64e-15;10!CL:1000497;2.90e-13;17!CL:0002518;2.90e-13;17!CL:0000359;7.58e-12;32!CL:1000449;3.82e-11;15!CL:0000071;7.14e-08;18!CL:1000413;2.61e-07;9!CL:0000192;5.38e-07;43!CL:0002681;7.21e-07;12!CL:0002584;7.21e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,6.27e-15,10;CL:1000494,6.27e-15,10;CL:1000497,2.62e-13,17;CL:0002518,2.62e-13,17;CL:0000359,1.10e-12,32;CL:1000449,3.12e-11,15;CL:0002321,1.21e-08,250;CL:0000192,3.33e-08,43;CL:0000514,3.33e-08,43;CL:0000222,3.45e-08,121;CL:0000071,6.21e-08,18;CL:0002546,6.21e-08,18;CL:1000413,2.36e-07,9;CL:0002681,6.06e-07,12;CL:0002584,6.06e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;7.14e-08;18!CL:0000514;5.38e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!2.36e-19!194;UBERON:0003914!2.33e-18!118;UBERON:0004111!1.68e-15!241;UBERON:0000119!6.39e-15!312;UBERON:0000483!8.31e-15!309;UBERON:0004573!4.74e-14!33;UBERON:0004571!4.74e-14!33;UBERON:0001637!9.21e-14!42;UBERON:0003509!9.21e-14!42;UBERON:0004572!9.21e-14!42;UBERON:0001981!2.28e-13!60;UBERON:0007500!2.28e-13!60;UBERON:0004537!2.28e-13!60;UBERON:0006965!2.28e-13!60;UBERON:0000477!4.53e-12!286;UBERON:0000055!3.80e-11!69;UBERON:0009569!1.22e-10!113;UBERON:0002049!2.00e-10!79;UBERON:0007798!2.00e-10!79;UBERON:0004872!2.69e-10!84;UBERON:0000490!1.82e-09!138;UBERON:0000475!2.11e-09!365;UBERON:0000468!2.36e-09!659;UBERON:0002100!4.71e-09!216;UBERON:0000947!1.05e-08!21;UBERON:0010191!1.05e-08!21;UBERON:0003103!1.78e-08!69;UBERON:0000481!3.59e-08!347;UBERON:0002417!1.15e-07!61;UBERON:0000916!1.15e-07!61;UBERON:0003886!1.29e-07!63;UBERON:0000466!2.16e-07!126;UBERON:0002113!3.39e-07!27;UBERON:0003918!3.39e-07!27;UBERON:0005095!3.39e-07!27;UBERON:0007687!3.39e-07!27;UBERON:0001986!3.79e-07!18;UBERON:0004638!3.79e-07!18;UBERON:0004852!3.79e-07!18;UBERON:0001009!4.66e-07!113;UBERON:0002553!5.91e-07!70;UBERON:0009773!9.40e-07!12;UBERON:0001231!9.40e-07!12;UBERON:0004810!9.40e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.33e-22;33!UBERON:0004571;2.33e-22;33!UBERON:0001637;1.08e-17;42!UBERON:0003509;1.08e-17;42!UBERON:0004572;1.08e-17;42!UBERON:0004211;8.64e-15;10!UBERON:0009773;8.64e-15;10!UBERON:0001231;8.64e-15;10!UBERON:0004810;8.64e-15;10!UBERON:0007500;1.13e-12;56!UBERON:0001981;1.13e-12;56!UBERON:0004537;1.13e-12;56!UBERON:0003914;1.31e-12;74!UBERON:0000947;2.15e-12;21!UBERON:0010191;2.15e-12;21!UBERON:0002113;7.75e-12;24!UBERON:0011143;7.75e-12;24!UBERON:0006555;3.82e-11;15!UBERON:0004819;3.82e-11;15!UBERON:0001285;3.82e-11;15!UBERON:0007684;3.82e-11;15!UBERON:0000489;3.96e-09;29!UBERON:0000055;8.43e-09;65!UBERON:0006554;1.06e-08;30!UBERON:0001008;1.06e-08;30!UBERON:0000025;4.59e-08;93!UBERON:0004638;7.14e-08;18!UBERON:0001986;7.14e-08;18!UBERON:0004852;7.14e-08;18!UBERON:0005172;2.44e-07;52!UBERON:0005173;2.44e-07;52!UBERON:0003915;2.61e-07;9!UBERON:0004700;2.61e-07;9!UBERON:0001917;2.61e-07;9!UBERON:0001225;7.21e-07;12!UBERON:0008987;7.21e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,7.66e-30,117;UBERON:0004573,1.28e-24,33;UBERON:0004571,1.28e-24,33;UBERON:0001637,5.47e-23,42;UBERON:0003509,5.47e-23,42;UBERON:0004572,5.47e-23,42;UBERON:0007500,2.45e-22,59;UBERON:0001981,2.45e-22,59;UBERON:0004537,2.45e-22,59;UBERON:0006965,2.45e-22,59;UBERON:0000055,3.10e-19,68;UBERON:0000025,1.54e-18,192;UBERON:0004872,1.15e-17,83;UBERON:0002049,1.77e-15,78;UBERON:0007798,1.77e-15,78;UBERON:0004810,6.27e-15,10;UBERON:0004111,2.44e-13,240;UBERON:0001009,6.28e-13,112;UBERON:0000947,2.47e-12,21;UBERON:0010191,2.47e-12,21;UBERON:0004535,1.07e-11,109;UBERON:0003104,1.66e-11,160;UBERON:0009142,1.66e-11,160;UBERON:0004211,3.12e-11,15;UBERON:0009773,3.12e-11,15;UBERON:0001231,3.12e-11,15;UBERON:0001285,3.12e-11,15;UBERON:0007684,3.12e-11,15;UBERON:0004208,3.12e-11,15;UBERON:0002113,1.25e-10,26;UBERON:0003918,1.25e-10,26;UBERON:0011143,1.25e-10,26;UBERON:0005095,1.25e-10,26;UBERON:0007687,1.25e-10,26;UBERON:0003103,1.43e-10,68;UBERON:0009569,1.89e-10,112;UBERON:0002100,1.99e-10,199;UBERON:0006555,2.31e-10,16;UBERON:0004819,2.31e-10,16;UBERON:0002417,3.03e-10,60;UBERON:0000916,3.03e-10,60;UBERON:0005172,6.26e-10,54;UBERON:0005173,6.26e-10,54;UBERON:0000483,4.41e-09,306;UBERON:0000119,7.86e-09,309;UBERON:0000489,2.65e-08,31;UBERON:0000490,4.38e-08,148;UBERON:0004638,6.21e-08,18;UBERON:0001986,6.21e-08,18;UBERON:0004852,6.21e-08,18;UBERON:0003915,2.36e-07,9;UBERON:0004700,2.36e-07,9;UBERON:0001917,2.36e-07,9;UBERON:0001225,6.06e-07,12;UBERON:0008987,6.06e-07,12 | |||
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| ||
|short_description=p3@GRB14 | |||
}} | }} |
Latest revision as of 22:57, 17 September 2015
Short description: | p3@GRB14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GRB14_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000446413_5end |
EntrezGene: | GRB14 |
HGNC: | 4565 |
UniProt: | C9JD37 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 6.27e-15 | 10 |
nephron tubule epithelial cell | 6.27e-15 | 10 |
kidney cell | 2.62e-13 | 17 |
kidney epithelial cell | 2.62e-13 | 17 |
vascular associated smooth muscle cell | 1.10e-12 | 32 |
epithelial cell of nephron | 3.12e-11 | 15 |
embryonic cell | 1.21e-08 | 250 |
smooth muscle cell | 3.33e-08 | 43 |
smooth muscle myoblast | 3.33e-08 | 43 |
mesodermal cell | 3.45e-08 | 121 |
blood vessel endothelial cell | 6.21e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.21e-08 | 18 |
endothelial cell of artery | 2.36e-07 | 9 |
kidney cortical cell | 6.06e-07 | 12 |
renal cortical epithelial cell | 6.06e-07 | 12 |