FFCP PHASE1:Hg19::chr3:53195258..53195279,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:53195258..53195279,+
|short_description=p2@PRKCD
|description=CAGE_peak_2_at_PRKCD_5end
|association_with_transcript=1bp_to_ENST00000477794_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5580 | |EntrezGene=5580 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9399 | |HGNC=9399 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000477794_5end | |||
|cluster_id=chr3:53195258..53195279,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_PRKCD_5end | |||
|id=chr3:53195258..53195279,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.35e-38!182;CL:0000037!1.01e-36!172;CL:0000566!1.01e-36!172;CL:0000738!2.14e-35!140;CL:0000763!3.23e-35!112;CL:0000049!3.23e-35!112;CL:0000766!7.22e-35!76;CL:0002032!1.44e-34!165;CL:0000837!1.44e-34!165;CL:0000557!1.67e-31!71;CL:0002009!8.78e-29!65;CL:0000839!1.42e-28!70;CL:0002194!1.03e-27!63;CL:0000576!1.03e-27!63;CL:0000040!1.03e-27!63;CL:0000559!1.03e-27!63;CL:0002057!7.75e-27!42;CL:0002031!1.08e-26!124;CL:0002087!3.73e-26!119;CL:0000860!1.35e-24!45;CL:0000134!1.69e-07!358;CL:0002320!3.78e-07!365;CL:0000945!8.01e-07!24;CL:0000826!8.01e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.42e-22;33!CL:0002057;2.42e-22;33!CL:0000473;1.18e-20;39!CL:0000234;1.18e-20;39!CL:0000576;5.66e-20;48!CL:0000766;7.00e-18;69!CL:0000763;3.24e-12;100!CL:0000738;2.22e-10;136!CL:0002087;3.80e-10;104!CL:0000988;3.47e-08;177!CL:0000945;3.09e-07;24!CL:0000451;3.42e-07;10!CL:0000094;5.89e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.04e-46,177;CL:0000037,5.14e-46,168;CL:0000738,4.31e-44,136;CL:0002032,3.37e-43,161;CL:0000837,3.37e-43,161;CL:0000763,6.77e-43,108;CL:0000049,6.77e-43,108;CL:0000766,1.84e-42,72;CL:0000557,1.28e-38,67;CL:0002009,1.37e-35,61;CL:0000839,4.66e-35,66;CL:0002194,2.23e-34,59;CL:0000576,2.23e-34,59;CL:0000040,2.23e-34,59;CL:0000559,2.23e-34,59;CL:0002031,1.57e-33,120;CL:0002087,4.99e-33,115;CL:0000473,7.79e-32,48;CL:0000234,7.79e-32,48;CL:0000860,9.38e-30,42;CL:0002057,9.38e-30,42;CL:0000134,1.03e-09,354;CL:0002320,3.44e-09,361;CL:0000219,1.72e-07,386;CL:0000945,2.72e-07,24;CL:0000826,2.72e-07,24;CL:0000451,3.44e-07,10;CL:0002393,6.42e-07,9;CL:0002397,6.42e-07,9;CL:0000094,6.98e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;8.46e-22;42!CL:0000049;2.10e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.15e-35!102;UBERON:0003061!1.15e-35!102;UBERON:0002193!3.54e-33!112;UBERON:0002371!9.40e-28!80;UBERON:0001474!9.78e-24!86;UBERON:0003081!2.01e-22!216;UBERON:0002405!5.29e-19!115;UBERON:0004765!8.40e-19!101;UBERON:0001434!8.40e-19!101;UBERON:0002204!3.99e-11!167;UBERON:0000178!7.33e-09!15;UBERON:0000179!7.33e-09!15;UBERON:0000463!7.33e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.35e-10;15!UBERON:0000179;9.35e-10;15!UBERON:0000463;9.35e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.56e-42,98;UBERON:0003061,1.56e-42,98;UBERON:0002193,2.12e-38,108;UBERON:0002371,2.72e-33,76;UBERON:0002405,1.08e-29,93;UBERON:0001474,1.48e-28,82;UBERON:0004765,1.26e-25,90;UBERON:0003081,2.76e-25,203;UBERON:0001434,1.39e-20,100;UBERON:0002204,1.20e-10,167;UBERON:0000178,1.06e-09,15;UBERON:0000179,1.06e-09,15;UBERON:0000463,1.06e-09,15;UBERON:0000926,1.93e-09,315;UBERON:0004120,1.93e-09,315;UBERON:0006603,1.93e-09,315;UBERON:0002384,1.06e-08,371 | |||
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| ||
|short_description=p2@PRKCD | |||
}} | }} |
Latest revision as of 01:30, 19 September 2015
Short description: | p2@PRKCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PRKCD_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 1bp_to_ENST00000477794_5end |
EntrezGene: | PRKCD |
HGNC: | 9399 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.56e-42 | 98 |
blood island | 1.56e-42 | 98 |
hemolymphoid system | 2.12e-38 | 108 |
bone marrow | 2.72e-33 | 76 |
immune system | 1.08e-29 | 93 |
bone element | 1.48e-28 | 82 |
skeletal element | 1.26e-25 | 90 |
lateral plate mesoderm | 2.76e-25 | 203 |
skeletal system | 1.39e-20 | 100 |
musculoskeletal system | 1.20e-10 | 167 |
blood | 1.06e-09 | 15 |
haemolymphatic fluid | 1.06e-09 | 15 |
organism substance | 1.06e-09 | 15 |
mesoderm | 1.93e-09 | 315 |
mesoderm-derived structure | 1.93e-09 | 315 |
presumptive mesoderm | 1.93e-09 | 315 |
connective tissue | 1.06e-08 | 371 |