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MCL coexpression mm9:723: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003126!3.11e-09!3;UBERON:0001005!3.11e-09!3;UBERON:0007196!3.11e-09!3;UBERON:0001558!3.11e-09!3;UBERON:0000358!8.81e-09!3;UBERON:0000307!8.81e-09!3;UBERON:0007010!8.81e-09!3;UBERON:0002384!1.22e-08!46
|tfbs_overrepresentation_for_novel_motifs=0.321524,0.352573,0.297937,0.360062,1.09907,0.975411,0.458558,0.392928,0.411053,0.10445,0.417132,0.447169,0.124608,0.470194,0.613681,0,0.656089,0.19356,0.364803,0.0560853,0.732601,0.145076,0.469335,0.198877,0.304728,0.496413,0.349241,0.392919,0.238759,0.271461,0.379806,0.754912,0.560002,0.0942651,0.214608,0.218093,0.184038,0.443753,0.498354,0.143746,0.196807,0.38461,0.56316,0.215898,0.0081642,0.349801,0.578773,0.407653,0.255625,0.241306,0.639101,0.522137,0.259389,0.894161,0.911367,0.47699,0.249055,0.435119,0.332535,0.47505,0.735292,0.531188,0.140453,0.628155,0.487593,0.667546,1.04613,1.3932,0.730718,1.24673,0.281085,0.80439,0.03967,0.944464,0.0968968,0.300089,0.313198,0.567793,0.718494,0.268962,0.406536,0.673009,0.529804,0.119727,0.830765,0.0122854,0.0149522,0.572901,0.583509,1.55487,1.11522,0.835661,0.767462,0.592123,0.163126,0.149272,0.388243,0.770215,0.57902,0.234357,0.541671,0.754637,0.87698,0.639679,0.638654,0.3842,0.696857,1.04215,0.273261,0.266818,0.315128,0.878738,0.26996,0.421988,1.12221,0.195318,0.0187247,0.363536,0.657356,0.181004,0.949798,0.607824,0.498153,0.566919,1.17594,0.722111,0.466292,0.760818,1.04463,0.59809,0.86025,0.931072,1.01535,0.48999,1.14365,0.0358067,0.329172,0.385921,1.09487,1.92247,1.5231,1.0508,0.509663,0.765172,1.529,0.385031,0.581788,1.88287,0.882109,1.10485,0.0806411,0.0316649,0.895708,0.46758,0.489108,0.976367,0.523103,0.224422,0.319291,0.328917,1.1043,0.829923,0.722546,0.313083,0.629147,0.482049,0.53929,0.445669,0.0300841
}}

Latest revision as of 15:47, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr13:112748565..112748568,+p@chr13:112748565..112748568
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Mm9::chr15:78389266..78389271,+p@chr15:78389266..78389271
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Mm9::chr16:72639852..72639856,+p@chr16:72639852..72639856
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Mm9::chr19:47245689..47245693,-p1@ENSMUST00000169692
Mm9::chr1:195437410..195437413,+p@chr1:195437410..195437413
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Mm9::chr2:72923513..72923516,+p@chr2:72923513..72923516
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Mm9::chr3:40309083..40309085,+p@chr3:40309083..40309085
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Mm9::chr5:91567069..91567071,+p@chr5:91567069..91567071
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Mm9::chr7:152402163..152402164,+p@chr7:152402163..152402164
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Mm9::chr9:26999322..26999323,+p@chr9:26999322..26999323
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte-erythroid progenitor cell9.33e-159
megakaryocyte progenitor cell9.82e-126
megakaryocyte9.82e-126
common myeloid progenitor3.54e-1019
myeloid lineage restricted progenitor cell7.10e-1013
animal cell2.94e-09115
eukaryotic cell2.94e-09115
motile cell3.11e-0954
duct epithelial cell3.11e-093
epithelial cell of tracheobronchial tree3.11e-093
branched duct epithelial cell3.11e-093
epithelial cell of lower respiratory tract3.11e-093
respiratory epithelial cell3.11e-093
tracheal epithelial cell3.11e-093
tracheoblast3.11e-093
somatic cell6.98e-09118
extraembryonic cell8.81e-093
trophoblast cell8.81e-093
connective tissue cell1.22e-0846
mesenchymal cell1.22e-0846
hematopoietic cell3.28e-0832
hematopoietic oligopotent progenitor cell3.28e-0832
hematopoietic stem cell3.28e-0832
angioblastic mesenchymal cell3.28e-0832
hematopoietic multipotent progenitor cell3.28e-0832
myeloid cell8.12e-0816
barrier cell9.54e-083
hematopoietic lineage restricted progenitor cell1.40e-0725

Uber Anatomy
Ontology termp-valuen
trachea3.11e-093
respiratory airway3.11e-093
tracheobronchial tree3.11e-093
lower respiratory tract3.11e-093
blastocyst8.81e-093
blastula8.81e-093
cleaving embryo8.81e-093
connective tissue1.22e-0846


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00561553
MA0004.10.360508
MA0006.10.210471
MA0007.10.346734
MA0009.10.780842
MA0014.10.00520703
MA0017.10.658116
MA0019.11.4676
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.10.219287
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.10.291712
MA0042.10.279998
MA0043.10.875991
MA0046.10.816137
MA0048.10.066679
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.17385
MA0056.10
MA0057.10.471918
MA0058.10.273976
MA0059.10.777514
MA0060.10.145297
MA0061.10.504772
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.10.0621035
MA0069.10.801381
MA0070.10.791856
MA0071.11.02422
MA0072.10.783532
MA0073.18.10453e-05
MA0074.10.451832
MA0076.10.249619
MA0077.10.762273
MA0078.10.536502
MA0081.10.305576
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.10.973907
MA0089.10
MA0090.10.877277
MA0091.10.372635
MA0092.10.329444
MA0093.10.226349
MA0095.10
MA0098.10
MA0100.10.440912
MA0101.10.292867
MA0103.10.242398
MA0105.10.632131
MA0106.10.543967
MA0107.10.237082
MA0108.20.625209
MA0109.10
MA0111.10.342068
MA0113.11.28551
MA0114.10.167085
MA0115.10.878749
MA0116.10.210297
MA0117.10.846964
MA0119.10.293392
MA0122.10.866511
MA0124.12.42467
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.10.470672
MA0139.10.121562
MA0140.10.440804
MA0141.10.719522
MA0142.10.674191
MA0143.10.53259
MA0144.10.169559
MA0145.10.163161
MA0146.10.00739145
MA0147.10.179496
MA0148.10.375491
MA0149.10.2978
MA0062.20.0948004
MA0035.20.44524
MA0039.20.11913
MA0138.20.590987
MA0002.20.391079
MA0137.20.713675
MA0104.20.134457
MA0047.20.495607
MA0112.20.163154
MA0065.20.163769
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.10.0653255
MA0155.10.186607
MA0156.10.694831
MA0157.10.642984
MA0158.10
MA0159.10.187774
MA0160.10.378276
MA0161.10
MA0162.10.00972009
MA0163.10.00834216
MA0164.10.471016
MA0080.20.669221
MA0018.20.480226
MA0099.20.584892
MA0079.20.0139787
MA0102.21.49914
MA0258.10.473611
MA0259.10.170828
MA0442.10
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