FFCP PHASE1:Hg19::chr7:134832793..134832807,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:134832793..134832807,+
|short_description=p3@TMEM140
|description=CAGE_peak_3_at_TMEM140_5end
|association_with_transcript=-16bp_to_ENST00000275767_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55281 | |EntrezGene=55281 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21870 | |HGNC=21870 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NV12 | |UniProt=Q9NV12 | ||
|association_with_transcript=-16bp_to_ENST00000275767_5end | |||
|cluster_id=chr7:134832793..134832807,+ | |||
|coexpression_cluster_id=C344 | |||
|description=CAGE_peak_3_at_TMEM140_5end | |||
|id=chr7:134832793..134832807,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.38e-29!140;CL:0002031!6.66e-27!124;CL:0002087!4.31e-26!119;CL:0000766!2.47e-23!76;CL:0000839!8.49e-20!70;CL:0002057!8.62e-20!42;CL:0002032!5.02e-19!165;CL:0000837!5.02e-19!165;CL:0000037!3.02e-18!172;CL:0000566!3.02e-18!172;CL:0000860!1.06e-17!45;CL:0002194!1.93e-17!63;CL:0000576!1.93e-17!63;CL:0000040!1.93e-17!63;CL:0000559!1.93e-17!63;CL:0000557!1.25e-16!71;CL:0000988!1.57e-16!182;CL:0002009!5.35e-16!65;CL:0000763!1.35e-10!112;CL:0000049!1.35e-10!112;CL:0000838!6.24e-09!52;CL:0000542!7.77e-09!53;CL:0000051!7.77e-09!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.32e-23;33!CL:0002057;5.32e-23;33!CL:0000473;1.54e-21;39!CL:0000234;1.54e-21;39!CL:0000576;1.77e-17;48!CL:0000766;4.41e-15;69!CL:0002087;2.83e-10;104!CL:0000738;1.15e-08;136!CL:0000094;1.73e-08;8!CL:0000763;8.70e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.08e-40,136;CL:0000766,4.16e-38,72;CL:0002031,2.17e-36,120;CL:0002087,2.21e-34,115;CL:0000839,1.11e-32,66;CL:0000473,4.28e-31,48;CL:0000234,4.28e-31,48;CL:0002194,8.51e-30,59;CL:0000576,8.51e-30,59;CL:0000040,8.51e-30,59;CL:0000559,8.51e-30,59;CL:0000557,9.31e-29,67;CL:0002032,1.95e-28,161;CL:0000837,1.95e-28,161;CL:0002009,3.64e-28,61;CL:0000860,5.91e-28,42;CL:0002057,5.91e-28,42;CL:0000037,1.74e-27,168;CL:0000988,5.67e-25,177;CL:0000763,6.88e-21,108;CL:0000049,6.88e-21,108;CL:0000094,1.40e-08,8;CL:0000838,1.11e-07,52;CL:0000542,2.27e-07,53;CL:0000051,2.27e-07,53;CL:0000134,4.40e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.60e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.33e-23!112;UBERON:0002390!3.98e-21!102;UBERON:0003061!3.98e-21!102;UBERON:0007023!2.12e-16!115;UBERON:0002371!1.04e-15!80;UBERON:0002405!8.75e-14!115;UBERON:0001474!3.87e-13!86;UBERON:0004765!1.13e-11!101;UBERON:0001434!1.13e-11!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.09e-07;15!UBERON:0000179;7.09e-07;15!UBERON:0000463;7.09e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.78e-35,108;UBERON:0002390,6.48e-35,98;UBERON:0003061,6.48e-35,98;UBERON:0002405,6.60e-29,93;UBERON:0002371,8.07e-28,76;UBERON:0001474,3.62e-24,82;UBERON:0004765,4.03e-20,90;UBERON:0001434,7.27e-18,100;UBERON:0003081,1.79e-13,203;UBERON:0007023,3.90e-10,114;UBERON:0002204,7.50e-08,167;UBERON:0000926,2.12e-07,315;UBERON:0004120,2.12e-07,315;UBERON:0006603,2.12e-07,315;UBERON:0000178,4.06e-07,15;UBERON:0000179,4.06e-07,15;UBERON:0000463,4.06e-07,15 | |||
|phase1_expression=1.81678379270557,0.856402095563933,1.9733616573436,0,0.893922188854576,1.74467704820074,0,1.26343974685366,1.04474251279935,0,0,0,0,0.37129905888014,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0.61130724598361,0.903106483949403,0.944529375764151,2.36018566109342,4.22212337906934,1.70297735647684,0,0,0,1.16200800870452,0.284338464974843,0.587200878669695,2.76997704265939,1.20326668482085,0.434021741431704,2.91090116511902,4.21061765824673,2.57575567634187,5.08893835728477,2.26725566213286,4.12392904019288,2.09186133215116,1.6446715520873,1.23882548358041,16.6861587546847,15.369642391746,15.1348627128695,1.72372840368309,0,4.06279459783025,3.20011977222428,1.91034305040492,1.57306439111559,4.89734227793444,2.56743221660875,1.91801137739712,12.8642007072819,11.5688921420546,11.9342930149154,8.70627715885752,5.10646702222026,8.09668923694247,15.0749199154046,7.82224377630302,16.9407298869991,11.502590550034,6.99727508376373,10.1267963981083,1.90129757680748,1.4882300997553,1.46761051855863,3.03287304095537,2.4028302854641,4.17886525412408,1.42506371870624,1.39241674039363,2.92262646023414,5.27988733383968,3.27683166757279,0.889509253863555,3.41384178053206,2.40237592221607,4.59801951963587,1.98313461835459,1.90810750907073,2.27685187643779,2.93618594685469,0.382273228125229,0,1.12101712596307,0.526768169550154,1.37696839079683,1.17903228824749,0.616804496998528,3.17654341242288,0.977766799900771,0.946895611469467,0,5.68193330114385,2.06224135232386,2.65840673500345,4.33286182024025,5.12365278902701,6.76308607311367,5.75532666112866,3.31620021343018,2.60822777161547,1.03800594213442,1.60524496853828,0,3.96582699441482,0.383220493601921,2.74901956386104,2.02415753615602,3.18565414324097,1.30216690771284,2.85135613334512,1.80690142893327,3.07167866770604,1.24930726552346,6.15620855314444,7.39015197228942,1.61285394579786,1.06976078313403,0.868946423296794,0,0,0,2.1686349143074,0.50133791063589,1.30361867064741,0,0.973269740605272,0,0,0,1.24430121722827,0,0,2.27183175558278,2.61194605948901,2.26028532882071,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0.775250277507987,0.35576626268671,1.00416183829401,1.61131726843659,0,0.976248230192678,0.367663080345869,0,1.07159673940896,0.898117490504679,1.0135033243499,0,0,0.366403487860815,11.8602375692457,27.1446184903828,0,0,0.379891534993739,1.32409180813219,0,0,0,0,0,0,0.134710672069688,0,0.302714855289863,0.576175924479999,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0.122834317311768,0.206651562351531,4.75201142912821,1.48360157567134,0.910161361938026,1.43723628363248,0,0,0,0.438977620880838,0.919463387397059,0.751190294532984,0,0.179389635688862,0.213557388818567,0.211931901159562,0.600182192168805,0.309157587715317,0,0.18611685633159,0,0,0.504867548488229,0.828449087780694,0.323292113637624,0.355009592516614,0,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,1.44375896333917,0.236613600079688,0,0,0.55146986366197,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0.117408694235822,1.58803092537181,0.925971025153221,1.71228737011138,0,0,2.70838706696137,1.17002132569619,2.37809859661965,0,0.503946384596579,0.283550194484773,0,0,0,0.492663237895943,5.98729351289937,1.4512968087854,2.16179930125442,1.13618190083742,0.63497894292169,0.763976851116555,0,0,0.308482478109971,1.20137223137567,1.42913216315289,0,0,0,0.387815147273333,3.57656445851882,0,0.26593811658487,2.08014873822732,0,0,0,0,0,0,0.325736184293735,0.710783897485092,0,3.31583314765545,0.871533458600294,0.199945982364114,1.2162378064119,2.51128545716063,2.10833939483032,0.239624855491583,1.14861935834114,1.42636905040718,0.868687840005475,0.61642896765115,0.179060963239896,1.68127715990291,1.57624608161542,2.58753089831421,2.31017465303547,0,0,0,0,0,20.9721966705211,20.9413021442817,31.4955790211387,0.613457458595699,0.500170521059677,0.542530047399471,2.28767947683888,0.892144943985809,1.57702415033935,1.05427273493442,0.902838299183157,0,0,0,0,1.04260337361699,0.587403472388222,0.343143423810856,0.206768026122887,1.72571360654893,1.921096040462,0,0,0,1.24053903909388,0.61384789315225,0,1.40953064181271,0,0.482561763430822,0,0.308419387605311,0.355123450626254,0.410635780069046,0,0.348631135379878,0,0.40101294060657,0.184161977871793,1.60740227430449,0.910455840033585,2.36023946926963,0,0,0,0,0.105551628892876,0,0.340187410553031,0.215915916102139,0,0,0,0,0,0,2.85037839639715,3.92153176537351,0.256450125116389,0,0,1.95777922130672,0.366277859273374,0.165018999841176,0,0,3.21367859688319,0.096670718292122,0,0,0,0.107420244868274,0.290033387828457,0.0852266274161009,0.0890320356467374,0.330569830721956,0,0.127612712494584,0.6069466851333,0.464845549297286,0,0,3.69640296211307,0.532306030317022,0,0.18532421910392,0,0,0,1.14378116354295,0,0.42793898803392,0.318203247925937,0,0.359744915166629,0.54907405947211,0,0.202182481573316,0,0,0,4.63055630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| |phase1_expression=1.81678379270557,0.856402095563933,1.9733616573436,0,0.893922188854576,1.74467704820074,0,1.26343974685366,1.04474251279935,0,0,0,0,0.37129905888014,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0.61130724598361,0.903106483949403,0.944529375764151,2.36018566109342,4.22212337906934,1.70297735647684,0,0,0,1.16200800870452,0.284338464974843,0.587200878669695,2.76997704265939,1.20326668482085,0.434021741431704,2.91090116511902,4.21061765824673,2.57575567634187,5.08893835728477,2.26725566213286,4.12392904019288,2.09186133215116,1.6446715520873,1.23882548358041,16.6861587546847,15.369642391746,15.1348627128695,1.72372840368309,0,4.06279459783025,3.20011977222428,1.91034305040492,1.57306439111559,4.89734227793444,2.56743221660875,1.91801137739712,12.8642007072819,11.5688921420546,11.9342930149154,8.70627715885752,5.10646702222026,8.09668923694247,15.0749199154046,7.82224377630302,16.9407298869991,11.502590550034,6.99727508376373,10.1267963981083,1.90129757680748,1.4882300997553,1.46761051855863,3.03287304095537,2.4028302854641,4.17886525412408,1.42506371870624,1.39241674039363,2.92262646023414,5.27988733383968,3.27683166757279,0.889509253863555,3.41384178053206,2.40237592221607,4.59801951963587,1.98313461835459,1.90810750907073,2.27685187643779,2.93618594685469,0.382273228125229,0,1.12101712596307,0.526768169550154,1.37696839079683,1.17903228824749,0.616804496998528,3.17654341242288,0.977766799900771,0.946895611469467,0,5.68193330114385,2.06224135232386,2.65840673500345,4.33286182024025,5.12365278902701,6.76308607311367,5.75532666112866,3.31620021343018,2.60822777161547,1.03800594213442,1.60524496853828,0,3.96582699441482,0.383220493601921,2.74901956386104,2.02415753615602,3.18565414324097,1.30216690771284,2.85135613334512,1.80690142893327,3.07167866770604,1.24930726552346,6.15620855314444,7.39015197228942,1.61285394579786,1.06976078313403,0.868946423296794,0,0,0,2.1686349143074,0.50133791063589,1.30361867064741,0,0.973269740605272,0,0,0,1.24430121722827,0,0,2.27183175558278,2.61194605948901,2.26028532882071,0,0,0,0.39752481473341,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0.775250277507987,0.35576626268671,1.00416183829401,1.61131726843659,0,0.976248230192678,0.367663080345869,0,1.07159673940896,0.898117490504679,1.0135033243499,0,0,0.366403487860815,11.8602375692457,27.1446184903828,0,0,0.379891534993739,1.32409180813219,0,0,0,0,0,0,0.134710672069688,0,0.302714855289863,0.576175924479999,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0.122834317311768,0.206651562351531,4.75201142912821,1.48360157567134,0.910161361938026,1.43723628363248,0,0,0,0.438977620880838,0.919463387397059,0.751190294532984,0,0.179389635688862,0.213557388818567,0.211931901159562,0.600182192168805,0.309157587715317,0,0.18611685633159,0,0,0.504867548488229,0.828449087780694,0.323292113637624,0.355009592516614,0,0.169560592310488,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,1.44375896333917,0.236613600079688,0,0,0.55146986366197,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0.117408694235822,1.58803092537181,0.925971025153221,1.71228737011138,0,0,2.70838706696137,1.17002132569619,2.37809859661965,0,0.503946384596579,0.283550194484773,0,0,0,0.492663237895943,5.98729351289937,1.4512968087854,2.16179930125442,1.13618190083742,0.63497894292169,0.763976851116555,0,0,0.308482478109971,1.20137223137567,1.42913216315289,0,0,0,0.387815147273333,3.57656445851882,0,0.26593811658487,2.08014873822732,0,0,0,0,0,0,0.325736184293735,0.710783897485092,0,3.31583314765545,0.871533458600294,0.199945982364114,1.2162378064119,2.51128545716063,2.10833939483032,0.239624855491583,1.14861935834114,1.42636905040718,0.868687840005475,0.61642896765115,0.179060963239896,1.68127715990291,1.57624608161542,2.58753089831421,2.31017465303547,0,0,0,0,0,20.9721966705211,20.9413021442817,31.4955790211387,0.613457458595699,0.500170521059677,0.542530047399471,2.28767947683888,0.892144943985809,1.57702415033935,1.05427273493442,0.902838299183157,0,0,0,0,1.04260337361699,0.587403472388222,0.343143423810856,0.206768026122887,1.72571360654893,1.921096040462,0,0,0,1.24053903909388,0.61384789315225,0,1.40953064181271,0,0.482561763430822,0,0.308419387605311,0.355123450626254,0.410635780069046,0,0.348631135379878,0,0.40101294060657,0.184161977871793,1.60740227430449,0.910455840033585,2.36023946926963,0,0,0,0,0.105551628892876,0,0.340187410553031,0.215915916102139,0,0,0,0,0,0,2.85037839639715,3.92153176537351,0.256450125116389,0,0,1.95777922130672,0.366277859273374,0.165018999841176,0,0,3.21367859688319,0.096670718292122,0,0,0,0.107420244868274,0.290033387828457,0.0852266274161009,0.0890320356467374,0.330569830721956,0,0.127612712494584,0.6069466851333,0.464845549297286,0,0,3.69640296211307,0.532306030317022,0,0.18532421910392,0,0,0,1.14378116354295,0,0.42793898803392,0.318203247925937,0,0.359744915166629,0.54907405947211,0,0.202182481573316,0,0,0,4.63055630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| ||
|short_description=p3@TMEM140 | |||
}} | }} |
Latest revision as of 12:49, 16 September 2015
Short description: | p3@TMEM140 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TMEM140_5end |
Coexpression cluster: | C344_Neutrophils_CD14_Eosinophils_Whole_blood_CD14CD16_gall |
Association with transcript: | -16bp_to_ENST00000275767_5end |
EntrezGene: | TMEM140 |
HGNC: | 21870 |
UniProt: | Q9NV12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.08e-40 | 136 |
myeloid leukocyte | 4.16e-38 | 72 |
hematopoietic lineage restricted progenitor cell | 2.17e-36 | 120 |
nongranular leukocyte | 2.21e-34 | 115 |
myeloid lineage restricted progenitor cell | 1.11e-32 | 66 |
defensive cell | 4.28e-31 | 48 |
phagocyte | 4.28e-31 | 48 |
monopoietic cell | 8.51e-30 | 59 |
monocyte | 8.51e-30 | 59 |
monoblast | 8.51e-30 | 59 |
promonocyte | 8.51e-30 | 59 |
granulocyte monocyte progenitor cell | 9.31e-29 | 67 |
hematopoietic oligopotent progenitor cell | 1.95e-28 | 161 |
hematopoietic multipotent progenitor cell | 1.95e-28 | 161 |
macrophage dendritic cell progenitor | 3.64e-28 | 61 |
classical monocyte | 5.91e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.91e-28 | 42 |
hematopoietic stem cell | 1.74e-27 | 168 |
hematopoietic cell | 5.67e-25 | 177 |
myeloid cell | 6.88e-21 | 108 |
common myeloid progenitor | 6.88e-21 | 108 |
granulocyte | 1.40e-08 | 8 |
lymphoid lineage restricted progenitor cell | 1.11e-07 | 52 |
lymphocyte | 2.27e-07 | 53 |
common lymphoid progenitor | 2.27e-07 | 53 |
mesenchymal cell | 4.40e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.78e-35 | 108 |
hematopoietic system | 6.48e-35 | 98 |
blood island | 6.48e-35 | 98 |
immune system | 6.60e-29 | 93 |
bone marrow | 8.07e-28 | 76 |
bone element | 3.62e-24 | 82 |
skeletal element | 4.03e-20 | 90 |
skeletal system | 7.27e-18 | 100 |
lateral plate mesoderm | 1.79e-13 | 203 |
adult organism | 3.90e-10 | 114 |
musculoskeletal system | 7.50e-08 | 167 |
mesoderm | 2.12e-07 | 315 |
mesoderm-derived structure | 2.12e-07 | 315 |
presumptive mesoderm | 2.12e-07 | 315 |
blood | 4.06e-07 | 15 |
haemolymphatic fluid | 4.06e-07 | 15 |
organism substance | 4.06e-07 | 15 |