FFCP PHASE1:Hg19::chr12:127650883..127650899,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:127650883..127650899,+ | |||
|coexpression_cluster_id=C222 | |||
|description=CAGE_peak_at_chr12:127650883..127650899,+ | |||
|id=chr12:127650883..127650899,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.04e-07!119;CL:0000192!1.45e-07!42;CL:0000514!1.45e-07!42;CL:0000359!3.79e-07!32;CL:0000680!8.30e-07!57;CL:0000056!8.30e-07!57;CL:0000355!8.30e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.22e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,4.93e-08,43;CL:0000514,4.93e-08,43;CL:0000359,5.63e-08,32;CL:0000222,3.79e-07,121;CL:0000680,4.60e-07,58;CL:0000056,4.60e-07,58;CL:0000355,4.60e-07,58;CL:0000187,6.47e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.85e-10!216;UBERON:0001009!1.61e-08!113;UBERON:0004290!1.90e-08!70;UBERON:0004535!3.29e-08!110;UBERON:0000486!5.33e-08!82;UBERON:0002049!6.35e-08!79;UBERON:0007798!6.35e-08!79;UBERON:0001981!1.36e-07!60;UBERON:0007500!1.36e-07!60;UBERON:0004537!1.36e-07!60;UBERON:0006965!1.36e-07!60;UBERON:0000055!1.64e-07!69;UBERON:0001134!2.38e-07!61;UBERON:0002036!2.38e-07!61;UBERON:0003082!2.38e-07!61;UBERON:0004872!2.63e-07!84;UBERON:0001637!4.68e-07!42;UBERON:0003509!4.68e-07!42;UBERON:0004572!4.68e-07!42;UBERON:0000926!5.10e-07!448;UBERON:0004120!5.10e-07!448;UBERON:0006603!5.10e-07!448;UBERON:0000914!7.41e-07!83;UBERON:0002329!7.41e-07!83;UBERON:0003077!7.41e-07!83;UBERON:0003059!7.41e-07!83;UBERON:0007282!7.41e-07!83;UBERON:0009618!7.41e-07!83;UBERON:0007285!7.41e-07!83 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.01e-11,315;UBERON:0004120,5.01e-11,315;UBERON:0006603,5.01e-11,315;UBERON:0003081,2.32e-09,203;UBERON:0007503,5.29e-09,78;UBERON:0007524,2.97e-08,73;UBERON:0002329,3.79e-08,71;UBERON:0003059,3.79e-08,71;UBERON:0007282,3.79e-08,71;UBERON:0004290,3.79e-08,71;UBERON:0009618,3.79e-08,71;UBERON:0001009,6.48e-08,112;UBERON:0003077,8.38e-08,72;UBERON:0007285,8.38e-08,72;UBERON:0002049,8.81e-08,78;UBERON:0007798,8.81e-08,78;UBERON:0000486,1.27e-07,83;UBERON:0004535,1.41e-07,109;UBERON:0001134,1.70e-07,62;UBERON:0002036,1.70e-07,62;UBERON:0003082,1.70e-07,62;UBERON:0000055,2.89e-07,68;UBERON:0005256,3.10e-07,122;UBERON:0007500,3.33e-07,59;UBERON:0001981,3.33e-07,59;UBERON:0004537,3.33e-07,59;UBERON:0006965,3.33e-07,59;UBERON:0001637,3.67e-07,42;UBERON:0003509,3.67e-07,42;UBERON:0004572,3.67e-07,42;UBERON:0002385,8.27e-07,64;UBERON:0001015,8.27e-07,64;UBERON:0000383,8.27e-07,64;UBERON:0004872,8.72e-07,83 | |||
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| |||
|short_description=p@chr12:127650883..127650899,+ | |||
}} |
Latest revision as of 06:36, 24 July 2015
Short description: | p@chr12:127650883..127650899, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:127650883..127650899, + |
Coexpression cluster: | C222_Melanocyte_Tracheal_Neutrophils_seminal_Smooth_Hair_Chondrocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 4.93e-08 | 43 |
smooth muscle myoblast | 4.93e-08 | 43 |
vascular associated smooth muscle cell | 5.63e-08 | 32 |
mesodermal cell | 3.79e-07 | 121 |
muscle precursor cell | 4.60e-07 | 58 |
myoblast | 4.60e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.60e-07 | 58 |
muscle cell | 6.47e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 5.01e-11 | 315 |
mesoderm-derived structure | 5.01e-11 | 315 |
presumptive mesoderm | 5.01e-11 | 315 |
lateral plate mesoderm | 2.32e-09 | 203 |
epithelial vesicle | 5.29e-09 | 78 |
dense mesenchyme tissue | 2.97e-08 | 73 |
somite | 3.79e-08 | 71 |
presomitic mesoderm | 3.79e-08 | 71 |
presumptive segmental plate | 3.79e-08 | 71 |
dermomyotome | 3.79e-08 | 71 |
trunk paraxial mesoderm | 3.79e-08 | 71 |
circulatory system | 6.48e-08 | 112 |
paraxial mesoderm | 8.38e-08 | 72 |
presumptive paraxial mesoderm | 8.38e-08 | 72 |
vasculature | 8.81e-08 | 78 |
vascular system | 8.81e-08 | 78 |
multilaminar epithelium | 1.27e-07 | 83 |
cardiovascular system | 1.41e-07 | 109 |
skeletal muscle tissue | 1.70e-07 | 62 |
striated muscle tissue | 1.70e-07 | 62 |
myotome | 1.70e-07 | 62 |
vessel | 2.89e-07 | 68 |
trunk mesenchyme | 3.10e-07 | 122 |
epithelial tube open at both ends | 3.33e-07 | 59 |
blood vessel | 3.33e-07 | 59 |
blood vasculature | 3.33e-07 | 59 |
vascular cord | 3.33e-07 | 59 |
artery | 3.67e-07 | 42 |
arterial blood vessel | 3.67e-07 | 42 |
arterial system | 3.67e-07 | 42 |
muscle tissue | 8.27e-07 | 64 |
musculature | 8.27e-07 | 64 |
musculature of body | 8.27e-07 | 64 |
splanchnic layer of lateral plate mesoderm | 8.72e-07 | 83 |