FFCP PHASE1:Hg19::chr12:3000037..3000067,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7289 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12425 | |||
|TSSclassifier=strong | |||
|UniProt=O75386,F5GWL5,B7Z1E7,F5H7B9 | |||
|association_with_transcript=0bp_to_ENST00000448120,ENST00000538354,ENST00000542730,ENST00000544943,ENST00000545331_5end | |||
|cluster_id=chr12:3000037..3000067,+ | |||
|description=CAGE_peak_2_at_TULP3_5end | |||
|id=chr12:3000037..3000067,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.91e-25!180;CL:0000057!5.83e-19!75;CL:0000220!1.71e-10!246;CL:0002321!2.39e-10!248;CL:0002620!4.44e-10!23;CL:0000183!1.76e-08!59;CL:0000066!7.85e-08!254;CL:0000499!8.37e-08!27;CL:0000222!9.83e-08!119;CL:0000187!3.37e-07!54;CL:0000680!5.24e-07!57;CL:0000056!5.24e-07!57;CL:0000355!5.24e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.55e-10;23!CL:0000057;3.83e-08;73!CL:0000499;7.33e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.47e-19,76;CL:0002321,8.30e-11,250;CL:0002620,4.44e-10,23;CL:0000222,3.31e-08,121;CL:0000499,1.10e-07,28;CL:0000066,1.36e-07,253;CL:0000187,1.44e-07,55;CL:0000680,2.30e-07,58;CL:0000056,2.30e-07,58;CL:0000355,2.30e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.94e-19!365;UBERON:0000481!3.60e-15!347;UBERON:0000119!2.93e-14!312;UBERON:0000483!1.23e-13!309;UBERON:0002100!4.25e-13!216;UBERON:0005256!4.55e-13!143;UBERON:0003104!2.95e-12!238;UBERON:0009142!2.95e-12!238;UBERON:0003102!2.75e-11!95;UBERON:0000468!2.34e-10!659;UBERON:0000914!2.40e-10!83;UBERON:0002329!2.40e-10!83;UBERON:0003077!2.40e-10!83;UBERON:0003059!2.40e-10!83;UBERON:0007282!2.40e-10!83;UBERON:0009618!2.40e-10!83;UBERON:0007285!2.40e-10!83;UBERON:0000486!1.64e-09!82;UBERON:0002199!1.21e-08!45;UBERON:0002416!1.21e-08!45;UBERON:0002097!1.88e-08!40;UBERON:0000467!2.69e-08!625;UBERON:0000480!2.96e-08!626;UBERON:0001048!3.05e-08!168;UBERON:0004290!3.59e-08!70;UBERON:0000477!6.02e-08!286 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.17e-14,309;UBERON:0000483,9.17e-14,306;UBERON:0003104,1.12e-12,160;UBERON:0009142,1.12e-12,160;UBERON:0002100,2.17e-11,199;UBERON:0003102,3.68e-11,99;UBERON:0000486,7.07e-10,83;UBERON:0007503,9.65e-10,78;UBERON:0005256,9.81e-10,122;UBERON:0002199,9.85e-09,46;UBERON:0002416,9.85e-09,46;UBERON:0002097,1.55e-08,41;UBERON:0002329,1.57e-08,71;UBERON:0003059,1.57e-08,71;UBERON:0007282,1.57e-08,71;UBERON:0004290,1.57e-08,71;UBERON:0009618,1.57e-08,71;UBERON:0000490,1.62e-08,148;UBERON:0007524,2.07e-08,73;UBERON:0003077,2.89e-08,72;UBERON:0007285,2.89e-08,72;UBERON:0001048,3.77e-08,160 | |||
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| |||
|short_description=p2@TULP3 | |||
}} |
Latest revision as of 02:24, 18 September 2015
Short description: | p2@TULP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TULP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000448120, ENST00000538354, ENST00000542730, ENST00000544943, ENST00000545331_5end |
EntrezGene: | TULP3 |
HGNC: | 12425 |
UniProt: | O75386F5GWL5B7Z1E7F5H7B9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.47e-19 | 76 |
embryonic cell | 8.30e-11 | 250 |
skin fibroblast | 4.44e-10 | 23 |
mesodermal cell | 3.31e-08 | 121 |
stromal cell | 1.10e-07 | 28 |
epithelial cell | 1.36e-07 | 253 |
muscle cell | 1.44e-07 | 55 |
muscle precursor cell | 2.30e-07 | 58 |
myoblast | 2.30e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.30e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
cell layer | 2.17e-14 | 309 |
epithelium | 9.17e-14 | 306 |
mesenchyme | 1.12e-12 | 160 |
entire embryonic mesenchyme | 1.12e-12 | 160 |
trunk | 2.17e-11 | 199 |
surface structure | 3.68e-11 | 99 |
multilaminar epithelium | 7.07e-10 | 83 |
epithelial vesicle | 9.65e-10 | 78 |
trunk mesenchyme | 9.81e-10 | 122 |
integument | 9.85e-09 | 46 |
integumental system | 9.85e-09 | 46 |
skin of body | 1.55e-08 | 41 |
somite | 1.57e-08 | 71 |
presomitic mesoderm | 1.57e-08 | 71 |
presumptive segmental plate | 1.57e-08 | 71 |
dermomyotome | 1.57e-08 | 71 |
trunk paraxial mesoderm | 1.57e-08 | 71 |
unilaminar epithelium | 1.62e-08 | 148 |
dense mesenchyme tissue | 2.07e-08 | 73 |
paraxial mesoderm | 2.89e-08 | 72 |
presumptive paraxial mesoderm | 2.89e-08 | 72 |
primordium | 3.77e-08 | 160 |