FFCP PHASE1:Hg19::chr17:79533576..79533598,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55666 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18261 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=29bp_to_uc010dic.2_5end | |||
|cluster_id=chr17:79533576..79533598,- | |||
|description=CAGE_peak_3_at_NPLOC4_5end | |||
|id=chr17:79533576..79533598,- | |||
|ontology_enrichment_celltype=CL:0000222!1.65e-18!119;CL:0000055!5.28e-16!180;CL:0000213!6.11e-14!57;CL:0000215!6.11e-14!57;CL:0000220!2.76e-13!246;CL:0002321!6.15e-13!248;CL:0002139!7.22e-12!24;CL:0000071!8.80e-11!18;CL:0002546!8.80e-11!18;CL:0000115!2.10e-10!35;CL:0000144!9.23e-10!625;CL:1000413!1.56e-09!9;CL:0000183!3.50e-09!59;CL:0000359!4.22e-09!32;CL:0002078!4.36e-09!44;CL:0000192!1.09e-08!42;CL:0000514!1.09e-08!42;CL:0002371!1.67e-08!591;CL:0000548!2.45e-08!679;CL:0000004!2.45e-08!679;CL:0000255!2.45e-08!679;CL:0000012!4.77e-08!682;CL:0000128!5.61e-08!7;CL:0000126!5.61e-08!7;CL:0000127!5.61e-08!7;CL:0002453!5.61e-08!7;CL:0000187!9.56e-08!54;CL:0000393!2.42e-07!60;CL:0000211!2.42e-07!60;CL:0000076!5.88e-07!62;CL:0002544!6.28e-07!6;CL:0000680!7.02e-07!57;CL:0000056!7.02e-07!57;CL:0000355!7.02e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000071;1.93e-17;18!CL:0002139;3.09e-17;24!CL:1000413;5.37e-17;9!CL:0000115;1.20e-16;36!CL:0002544;1.25e-14;6!CL:0000128;3.80e-13;7!CL:0000126;3.80e-13;7!CL:0000127;3.80e-13;7!CL:0000213;1.78e-11;58!CL:0000215;1.78e-11;58!CL:0002078;7.13e-10;45!CL:0002605;9.18e-09;3!CL:0000064;1.20e-08;3!CL:0000067;1.20e-08;3!CL:0005012;1.20e-08;3!CL:0002304;1.20e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.57e-18,58;CL:0000215,2.57e-18,58;CL:0000115,5.22e-18,36;CL:0000071,1.25e-17,18;CL:0002546,1.25e-17,18;CL:0002139,2.39e-17,24;CL:1000413,5.40e-17,9;CL:0000222,9.01e-17,121;CL:0002078,3.39e-15,45;CL:0002544,1.56e-14,6;CL:0000128,3.28e-13,7;CL:0000126,3.28e-13,7;CL:0000127,3.28e-13,7;CL:0002453,3.28e-13,7;CL:0002321,4.19e-11,250;CL:0000076,1.97e-09,63;CL:0002605,8.35e-09,3;CL:0000064,1.23e-08,3;CL:0000067,1.23e-08,3;CL:0005012,1.23e-08,3;CL:0002304,1.23e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002546;1.93e-17;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!2.36e-23!79;UBERON:0007798!2.36e-23!79;UBERON:0004872!2.75e-22!84;UBERON:0003914!1.88e-21!118;UBERON:0001981!2.32e-20!60;UBERON:0007500!2.32e-20!60;UBERON:0004537!2.32e-20!60;UBERON:0006965!2.32e-20!60;UBERON:0000055!4.53e-20!69;UBERON:0004535!8.15e-20!110;UBERON:0001009!1.11e-18!113;UBERON:0001637!7.69e-18!42;UBERON:0003509!7.69e-18!42;UBERON:0004572!7.69e-18!42;UBERON:0004573!4.42e-11!33;UBERON:0004571!4.42e-11!33;UBERON:0001986!8.80e-11!18;UBERON:0004638!8.80e-11!18;UBERON:0004852!8.80e-11!18;UBERON:0000490!3.86e-10!138;UBERON:0003915!1.56e-09!9;UBERON:0004700!1.56e-09!9;UBERON:0001917!1.56e-09!9;UBERON:0000025!2.53e-09!194;UBERON:0000477!5.89e-09!286;UBERON:0000947!1.39e-08!21;UBERON:0010191!1.39e-08!21;UBERON:0000487!7.52e-08!22;UBERON:0006914!3.78e-07!25;UBERON:0004111!6.68e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.93e-17;18!UBERON:0001986;1.93e-17;18!UBERON:0004852;1.93e-17;18!UBERON:0003915;5.37e-17;9!UBERON:0004700;5.37e-17;9!UBERON:0001917;5.37e-17;9!UBERON:0007500;1.27e-16;56!UBERON:0001981;1.27e-16;56!UBERON:0004537;1.27e-16;56!UBERON:0001637;1.14e-15;42!UBERON:0003509;1.14e-15;42!UBERON:0004572;1.14e-15;42!UBERON:0000487;9.70e-14;22!UBERON:0000055;2.44e-13;65!UBERON:0002049;3.40e-12;75!UBERON:0007798;3.40e-12;75!UBERON:0006914;9.51e-12;25!UBERON:0000490;8.38e-11;33!UBERON:0003914;2.07e-10;74!UBERON:0000947;7.31e-10;21!UBERON:0010191;7.31e-10;21!UBERON:0004573;8.42e-10;33!UBERON:0004571;8.42e-10;33!UBERON:0001778;1.20e-08;3!UBERON:0001775;1.20e-08;3!UBERON:0004535;2.67e-08;109!UBERON:0001009;3.12e-08;112!UBERON:0000025;5.06e-08;93 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,2.05e-27,78;UBERON:0007798,2.05e-27,78;UBERON:0007500,5.31e-23,59;UBERON:0001981,5.31e-23,59;UBERON:0004537,5.31e-23,59;UBERON:0006965,5.31e-23,59;UBERON:0000055,1.62e-22,68;UBERON:0004535,3.01e-21,109;UBERON:0001009,2.09e-20,112;UBERON:0004872,2.48e-20,83;UBERON:0001637,3.80e-20,42;UBERON:0003509,3.80e-20,42;UBERON:0004572,3.80e-20,42;UBERON:0004638,1.25e-17,18;UBERON:0001986,1.25e-17,18;UBERON:0004852,1.25e-17,18;UBERON:0003914,1.90e-17,117;UBERON:0003915,5.40e-17,9;UBERON:0004700,5.40e-17,9;UBERON:0001917,5.40e-17,9;UBERON:0000487,6.89e-14,22;UBERON:0006914,7.09e-12,25;UBERON:0004573,4.85e-11,33;UBERON:0004571,4.85e-11,33;UBERON:0000025,1.19e-10,192;UBERON:0000947,9.24e-10,21;UBERON:0010191,9.24e-10,21;UBERON:0001778,1.23e-08,3;UBERON:0001775,1.23e-08,3;UBERON:0003081,3.15e-08,203;UBERON:0004111,8.45e-08,240;UBERON:0000490,5.07e-07,148;UBERON:0000483,6.09e-07,306;UBERON:0000119,9.05e-07,309 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.704772020479856,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0.495065411840187,0.662794751455832,0.672325146451775,0,0,0.975865597581014,0.861847406537515,1.42800483870977,2.19418305034661,2.86235987131057,2.05311637609326,5.90050406095573,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.383587685530591,0.361439152384566,1.00267582127178,0.869079113764942,0,1.94653948121054,2.26883561193763,2.66075276955077,3.33772185633879,0.0654895377488563,0,0,0,0,0,0,0,0,1.19257444420023,3.4409383804245,2.77712401286075,1.13061588384802,0.838998872419812,2.75118041940067,3.55291443112578,0,0,2.00832367658802,2.01414658554573,0.760272105718513,0,1.10298924103761,4.0507097394088,0.446498641420399,0,0,1.53316637465883,2.84779697870439,1.46561395144326,0,0,0.436094052142534,3.97577561356255,1.13967460498122,0.132409180813219,0.286836620748814,1.06400514659507,0.560677600142307,4.2699598291882,3.7000132262574,0,0.134710672069688,0.653847612453835,1.36221684880438,2.30470369792,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0.612975591598039,0.45071417671979,1.13432183160021,0,1.06778694409284,0.423863802319124,0.300091096084402,0.309157587715317,0,0.18611685633159,0,0.68205903612839,0,1.01254888506529,0,0,0.302256294682921,0.508681776931463,0,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,2.78620756819187,0,0.236613600079688,0.337169380156203,0.723033089650446,0.110293972732394,0.435758888184812,0,0,0,0,0,1.40241773803446,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0.463721619900307,3.40485213283883,2.59859605969933,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,4.13669490424889,0,0,0.531876233169741,0,0,0,0,0.428933980974443,0.542621605391443,0.823240336780769,0,0.710783897485092,0.791951872933429,0,0.871533458600294,0.299918973546171,0,0,0,0.479249710983165,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0.637938751653163,0,0,0,0.24538298343828,1.50051156317903,0,1.87173775377726,0.892144943985809,0.788512075169673,0.585707074963566,3.00946099727719,2.27407504055985,0,0.664225598535437,2.02806085395873,0,0.979005787313703,0.343143423810856,0,0,0,0,3.32870879020994,0.30239029332968,1.48864684691266,0.460385919864187,1.40330047216537,0.384417447767103,1.02341449813341,1.44768529029247,1.48418066444991,0,0.532685175939381,0.0821271560138091,0,0,0,0.601519410909855,0,0,0,0,1.35359883872224,0.0770153371044148,0,0,0.105551628892876,2.27466768141793,0,1.0795795805107,29.303178011155,0.812839312631559,1.00337954770971,0,0,0.447749509444357,0,0,0,0.984043937099117,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0.801288320820636,0,0.384380134730212,0.127612712494584,0.10115778085555,0,0.31481234683064,0,0,2.66153015158511,0.869932992075073,0.9266210955196,1.14499909393593,0,0.632758849437452,0.571890581771475,0,0.42793898803392,0,2.35484592059769,0.179872457583315,0,0.117812402345686,1.2130948894399,0,0.842516912477962,1.46290121726877,0,1.05650146756755,0.136499911407986,0.424216295861138,1.13008116620243,0.551365343546124,0,0.438450885253763,0,0,5.47858017799301,0.92947049429925,1.69017361519345,0.143411352204052,2.84922218938051,2.1400263088875,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0.280797178113459,0.912938716132769,0,0,0,0,0,0,0,0.307240764308458,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0.16480387422676,0,3.38721580026819,0.552567831062295,0,5.21570280760989,0,0.622079175323615,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.683652335082007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,1.51647791108371,0,0,0.664653872707185,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,4.81560890920526,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0.0801588202515337,0.640358984218058,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.201550417460179,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0.191915197319445,0,0,0,0,0,0.326587360109409,1.19730191562487,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0.447764408660622,0.467426619694449,0,0,0,0,0,0,0.621748802331122,0.147855149989634,0,0,0.155262956876259,0,0.265841714557995,0,0.450772826991655,0,0,0.181848659202559,0.322231671127465,0,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,2.14441591374926,1.04397716786085,0.906823702049089,2.31522474323834,0.244736704506468,3.22359913946677,2.16161013012681,0.438568099157414,0,0,0.337884881306145,0,1.38172136692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| |||
|short_description=p3@NPLOC4 | |||
}} |
Latest revision as of 07:45, 18 September 2015
Short description: | p3@NPLOC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NPLOC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_uc010dic.2_5end |
EntrezGene: | NPLOC4 |
HGNC: | 18261 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.57e-18 | 58 |
barrier cell | 2.57e-18 | 58 |
endothelial cell | 5.22e-18 | 36 |
blood vessel endothelial cell | 1.25e-17 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.25e-17 | 18 |
endothelial cell of vascular tree | 2.39e-17 | 24 |
endothelial cell of artery | 5.40e-17 | 9 |
mesodermal cell | 9.01e-17 | 121 |
meso-epithelial cell | 3.39e-15 | 45 |
aortic endothelial cell | 1.56e-14 | 6 |
oligodendrocyte | 3.28e-13 | 7 |
macroglial cell | 3.28e-13 | 7 |
astrocyte | 3.28e-13 | 7 |
oligodendrocyte precursor cell | 3.28e-13 | 7 |
embryonic cell | 4.19e-11 | 250 |
squamous epithelial cell | 1.97e-09 | 63 |
astrocyte of the cerebral cortex | 8.35e-09 | 3 |
ciliated cell | 1.23e-08 | 3 |
ciliated epithelial cell | 1.23e-08 | 3 |
multi-ciliated epithelial cell | 1.23e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.23e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature | 2.05e-27 | 78 |
vascular system | 2.05e-27 | 78 |
epithelial tube open at both ends | 5.31e-23 | 59 |
blood vessel | 5.31e-23 | 59 |
blood vasculature | 5.31e-23 | 59 |
vascular cord | 5.31e-23 | 59 |
vessel | 1.62e-22 | 68 |
cardiovascular system | 3.01e-21 | 109 |
circulatory system | 2.09e-20 | 112 |
splanchnic layer of lateral plate mesoderm | 2.48e-20 | 83 |
artery | 3.80e-20 | 42 |
arterial blood vessel | 3.80e-20 | 42 |
arterial system | 3.80e-20 | 42 |
blood vessel endothelium | 1.25e-17 | 18 |
endothelium | 1.25e-17 | 18 |
cardiovascular system endothelium | 1.25e-17 | 18 |
epithelial tube | 1.90e-17 | 117 |
endothelial tube | 5.40e-17 | 9 |
arterial system endothelium | 5.40e-17 | 9 |
endothelium of artery | 5.40e-17 | 9 |
simple squamous epithelium | 6.89e-14 | 22 |
squamous epithelium | 7.09e-12 | 25 |
systemic artery | 4.85e-11 | 33 |
systemic arterial system | 4.85e-11 | 33 |
tube | 1.19e-10 | 192 |
aorta | 9.24e-10 | 21 |
aortic system | 9.24e-10 | 21 |
ciliary epithelium | 1.23e-08 | 3 |
ciliary body | 1.23e-08 | 3 |
lateral plate mesoderm | 3.15e-08 | 203 |
anatomical conduit | 8.45e-08 | 240 |
unilaminar epithelium | 5.07e-07 | 148 |
epithelium | 6.09e-07 | 306 |
cell layer | 9.05e-07 | 309 |