FFCP PHASE1:Hg19::chr19:3062381..3062427,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=166 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=307 | |||
|TSSclassifier=strong | |||
|UniProt=Q08117,Q14CJ1,Q8WY48 | |||
|association_with_transcript=-10bp_to_ENST00000327141,NM_001130,NM_198970,uc002lwy.1,uc002lwz.1_5end | |||
|cluster_id=chr19:3062381..3062427,- | |||
|description=CAGE_peak_3_at_AES_5end | |||
|id=chr19:3062381..3062427,- | |||
|ontology_enrichment_celltype=CL:0000192!2.97e-08!42;CL:0000514!2.97e-08!42;CL:0000359!6.23e-08!32;CL:0000183!1.16e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.50e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,5.79e-08,43;CL:0000514,5.79e-08,43;CL:0000359,6.23e-08,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!6.28e-12!365;UBERON:0000481!5.41e-11!347;UBERON:0004121!2.18e-10!169;UBERON:0000924!2.70e-10!173;UBERON:0006601!2.70e-10!173;UBERON:0000153!5.29e-10!129;UBERON:0007811!5.29e-10!129;UBERON:0000033!6.28e-10!123;UBERON:0000483!5.50e-09!309;UBERON:0000119!7.31e-09!312;UBERON:0000064!1.38e-08!219;UBERON:0003075!5.39e-08!86;UBERON:0007284!5.39e-08!86;UBERON:0000956!7.11e-08!25;UBERON:0000203!7.11e-08!25;UBERON:0000477!8.14e-08!286;UBERON:0002346!8.26e-08!90;UBERON:0001869!1.14e-07!32;UBERON:0004111!1.61e-07!241;UBERON:0002619!2.63e-07!22;UBERON:0000914!2.75e-07!83;UBERON:0002329!2.75e-07!83;UBERON:0003077!2.75e-07!83;UBERON:0003059!2.75e-07!83;UBERON:0007282!2.75e-07!83;UBERON:0009618!2.75e-07!83;UBERON:0007285!2.75e-07!83;UBERON:0000955!3.28e-07!69;UBERON:0006238!3.28e-07!69;UBERON:0003056!5.18e-07!61;UBERON:0001017!6.06e-07!82;UBERON:0000025!6.06e-07!194;UBERON:0001893!6.31e-07!34;UBERON:0001950!7.36e-07!20;UBERON:0002020!9.29e-07!34;UBERON:0003528!9.29e-07!34;UBERON:0000486!9.48e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;7.49e-08;25!UBERON:0000203;7.49e-08;25!UBERON:0002619;2.87e-07;22!UBERON:0001869;6.09e-07;32!UBERON:0001950;8.63e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.93e-10,171;UBERON:0000924,8.93e-10,171;UBERON:0006601,8.93e-10,171;UBERON:0010314,2.35e-09,132;UBERON:0000483,3.53e-08,306;UBERON:0000119,4.61e-08,309;UBERON:0000956,7.11e-08,25;UBERON:0000203,7.11e-08,25;UBERON:0001869,1.14e-07,32;UBERON:0004111,1.36e-07,240;UBERON:0010371,1.43e-07,104;UBERON:0002619,2.63e-07,22;UBERON:0007503,3.69e-07,78;UBERON:0003075,4.00e-07,82;UBERON:0007284,4.00e-07,82;UBERON:0002346,5.87e-07,86;UBERON:0001893,6.31e-07,34;UBERON:0002791,6.61e-07,32;UBERON:0001950,7.36e-07,20;UBERON:0000955,8.11e-07,68;UBERON:0006238,8.11e-07,68;UBERON:0003528,9.29e-07,34;UBERON:0002020,9.29e-07,34;UBERON:0000025,9.38e-07,192 | |||
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| |||
|short_description=p3@AES | |||
}} |
Latest revision as of 04:23, 17 September 2015
Short description: | p3@AES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_AES_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000327141, NM_001130, NM_198970, uc002lwy.1, uc002lwz.1_5end |
EntrezGene: | AES |
HGNC: | 307 |
UniProt: | Q08117Q14CJ1Q8WY48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 5.79e-08 | 43 |
smooth muscle myoblast | 5.79e-08 | 43 |
vascular associated smooth muscle cell | 6.23e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.93e-10 | 171 |
ectoderm | 8.93e-10 | 171 |
presumptive ectoderm | 8.93e-10 | 171 |
structure with developmental contribution from neural crest | 2.35e-09 | 132 |
epithelium | 3.53e-08 | 306 |
cell layer | 4.61e-08 | 309 |
cerebral cortex | 7.11e-08 | 25 |
pallium | 7.11e-08 | 25 |
cerebral hemisphere | 1.14e-07 | 32 |
anatomical conduit | 1.36e-07 | 240 |
ecto-epithelium | 1.43e-07 | 104 |
regional part of cerebral cortex | 2.63e-07 | 22 |
epithelial vesicle | 3.69e-07 | 78 |
neural plate | 4.00e-07 | 82 |
presumptive neural plate | 4.00e-07 | 82 |
neurectoderm | 5.87e-07 | 86 |
telencephalon | 6.31e-07 | 34 |
regional part of telencephalon | 6.61e-07 | 32 |
neocortex | 7.36e-07 | 20 |
brain | 8.11e-07 | 68 |
future brain | 8.11e-07 | 68 |
brain grey matter | 9.29e-07 | 34 |
gray matter | 9.29e-07 | 34 |
tube | 9.38e-07 | 192 |