FFCP PHASE1:Hg19::chr1:24645832..24645853,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57822 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25839 | |||
|TSSclassifier=strong | |||
|UniProt=G3XAF0,B2RCL1,Q8TE85 | |||
|association_with_transcript=20bp_to_ENST00000361548,NM_198173,NM_198174_5end | |||
|cluster_id=chr1:24645832..24645853,+ | |||
|coexpression_cluster_id=C683 | |||
|description=CAGE_peak_1_at_GRHL3_5end | |||
|id=chr1:24645832..24645853,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.78e-18!43;CL:0000066!6.30e-17!254;CL:0000223!7.55e-13!59;CL:0002368!3.08e-10!13;CL:0002251!1.45e-08!21;CL:0000039!2.45e-07!7;CL:0000586!2.45e-07!7;CL:0002202!3.65e-07!9;CL:0002632!3.65e-07!9;CL:0002159!4.37e-07!13;CL:0002077!5.73e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.38e-13;42!CL:0002368;2.49e-12;13!CL:0000039;4.45e-11;7!CL:0000586;4.45e-11;7!CL:0000622;1.47e-09;5!CL:0002202;1.79e-09;9!CL:0002632;1.79e-09;9!CL:0002322;4.54e-09;5!CL:0000154;7.26e-08;6!CL:1000507;1.45e-07;10!CL:1000494;1.45e-07;10!CL:0000244;1.48e-07;4!CL:0000731;1.48e-07;4!CL:0002159;1.87e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.77e-16,42;CL:0000066,1.04e-12,253;CL:0002368,2.39e-12,13;CL:0000223,2.57e-11,58;CL:0000039,2.81e-11,7;CL:0000586,2.81e-11,7;CL:0000622,1.50e-09,5;CL:0002202,1.92e-09,9;CL:0002632,1.92e-09,9;CL:0002322,4.14e-09,5;CL:0000154,7.39e-08,6;CL:0000244,1.19e-07,4;CL:0000731,1.19e-07,4;CL:1000507,1.64e-07,10;CL:1000494,1.64e-07,10;CL:0002159,1.75e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!3.11e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.03e-07;22!DOID:2994;6.03e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.28e-07,22;DOID:2994,5.28e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003076!8.35e-10!15;UBERON:0003057!8.35e-10!15;UBERON:0001008!1.19e-09!45;UBERON:0006554!4.24e-09!44;UBERON:0000153!7.71e-09!129;UBERON:0007811!7.71e-09!129;UBERON:0004121!1.32e-08!169;UBERON:0000924!1.55e-08!173;UBERON:0006601!1.55e-08!173;UBERON:0000489!2.42e-08!32;UBERON:0000161!2.44e-08!35;UBERON:0001004!2.70e-08!72;UBERON:0000464!5.02e-08!104;UBERON:0000033!7.85e-08!123;UBERON:0000475!8.43e-08!365;UBERON:0004733!1.39e-07!12;UBERON:0002028!1.39e-07!12;UBERON:0007277!1.39e-07!12;UBERON:0000166!4.62e-07!21;UBERON:0004732!9.07e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;3.21e-10;30!UBERON:0001008;3.21e-10;30!UBERON:0000489;5.89e-09;29!UBERON:0007196;1.97e-08;15!UBERON:0001558;1.97e-08;15!UBERON:0004211;1.45e-07;10!UBERON:0009773;1.45e-07;10!UBERON:0001231;1.45e-07;10!UBERON:0004810;1.45e-07;10!UBERON:0000165;4.49e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,1.75e-09,48;UBERON:0003076,7.05e-09,15;UBERON:0003057,7.05e-09,15;UBERON:0000161,8.49e-09,36;UBERON:0006554,9.64e-09,47;UBERON:0007196,2.00e-08,15;UBERON:0001558,2.00e-08,15;UBERON:0000166,4.42e-08,22;UBERON:0000489,5.25e-08,31;UBERON:0001004,1.26e-07,74;UBERON:0004810,1.64e-07,10;UBERON:0004121,6.00e-07,171;UBERON:0000924,6.00e-07,171;UBERON:0006601,6.00e-07,171;UBERON:0003103,6.16e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0,0,0,0,0,0,0,0,2.83178433576612,0.204000691244253,5.01527554364941,0.572471974262113,0.958120975510189,0.251085279189606,0.0764134057479513,0,0,0,0,0,8.27479102031034,7.228942050678,13.3111443660044,0.46480320348181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,8.47559303686716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.0654895377488563,48.0869780546156,37.4492287212274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,32.2709598585475,0,0,0,0,0,0,0,0,0,0,0,1.96764655938411,2.30470369792,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2091294834712,7.0913991353617,3.15485054927904,4.87894824518382,4.5060121229305,4.06678800043314,4.87206958572241,13.3730050964083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0.514703430895577,10.4262771138194,15.7362454560667,2.21163739305588,9.35143296101149,0,0,0,0,0.352226082707465,0,0,0,0,1.71697232418975,0,0,0,0.93733833986777,0.503946384596579,3.82792762554443,0.358234090811393,1.74380363108377,1.53353071666084,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,12.430933506346,0,0,0,4.06079651616671,8.16362573306797,1.56869953835371,1.46139224653261,2.11103257785751,0,0,0,0,0,0,8.15604073744123,9.14183609821597,0.447749509444357,0,0,0,0.328014645699706,0,0.206082023295445,0.732555718546747,0.742585499285292,5.74265537996172,7.80072295243825,0,0,0,0,0,0,0,0,0,3.8015530533025,0.768760269460425,3.57315594984836,6.87872909817739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,10.0070997234533,5.3624182042863,3.26672954583968,0.188287601553558,3.44404298136984,23.5860065934676,12.8594744525636,1.83778720165568,0,0,0,0,0,0,0,0,3.20472213382419,0,2.20536194382929,0,0,0,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0.19924798825107,0,0.251932747854276,0,0.123084805461069,0,0.539210106883961,0,0,1.479651084554,0,0,0,0,0,0,1.13697999995054,0,0.341380344856499,6.35634125731916,0,0.689486746482929,0,0.173624994933292,5.31444831488303,0.120596438625408,1.52581736317083,0,0.295547618953547,0,0,37.6444109552229,6.38687145581516,0,26.975976813403,5.56497395340587,1.95565269459615,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0.182454789215666,0.586993856796269,0,0,0,0,0.063186579628488,0.150323419414493,1.14057010536972,0,0,0,0,1.70765727617876,0,1.21491816834592,6.85946781900644,0.870592065804026,0.17472666824203,0.171986032471617,0,0,0,66.9224213770094,62.2205693175077,0,0,0,0,4.30213042016567,0,0.213452994739353,0.19980960958213,0.72045208577053,0.114536596165916,0,0,0,0.471388069233591,0,0,0,0,3.00210144354895,0.273810757783986,0,0,0,0,0,0,2.39614800598789,0,0,0.335917362433631,0,0,0,0,0,0,0.254019996197353,1.59045937961861,0,1.12527203925513,1.37539436597234,1.66176135211674,7.87408620430252,13.9284351820431,0,20.4615159435552,0.0788057072991982,0.419636705079985,0,1.25501137532991,0.191915197319445,0,0,1.017074150619,0,0,0,0,0,0,0,0,0,2.06852730178481,2.38018683136842,0,0.704815022316672,0,0.157204305099666,0,0,0,0,1.91502377331055,0,0,0,0,0.314108192500469,0,0,0,6.88091034828085,1.33114861844223,0.683060432355218,0,1.12482367165896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0.389720617678777,0,0.327130788511688,0,0,0.633936370075881,0,0,0,0,0,33.1514433295083,2.48830904013189,0,0,0,0,7.46823131797711,0,0,0.558644917973244,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0.0981477185010256,0.353909170043221,3.11828617486854,0.808679663052368,0,0,3.1826595538604,0,0,0,11.0000811682197,0,0.887136517302272,0,0,0,0,0,0,1.98484471355718,0,0.638812138197976,1.07140367175657,0.336283722218824,0,0,1.1531308121143,0.345701962667338,0,0.475788130837822,0,0,2.11339663594931,2.11931350696388,0.157115589916002,8.40816489941367,0,0,0,0,0.158013611732727,0,0,0,9.11751122317362,6.1458651753822,11.0601545890255,2.15113679410139,0.118332000730565,0.170426809518315,0.423387050190929,1.8328549483524,0,0,0,0,0.243835849964539,0.647428837187895,0,0,13.1141968125968,0.701818390386317,0,0,0.11294608203896,0,0,0,0,0,0.490296643507811,0,3.53355240806901,4.1586496045792,1.2679671827502,0,0,0,0.0999411559249289,0.535661815816973,9.88105640803937,0.0802413666891683,0,0,0.143339583151451,0.157771562193185,0,0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| |||
|short_description=p1@GRHL3 | |||
}} |
Latest revision as of 22:34, 16 September 2015
Short description: | p1@GRHL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GRHL3_5end |
Coexpression cluster: | C683_esophagus_tongue_tonsil_Corneal_cervical_Esophageal_throat |
Association with transcript: | 20bp_to_ENST00000361548, NM_198173, NM_198174_5end |
EntrezGene: | GRHL3 |
HGNC: | 25839 |
UniProt: | G3XAF0B2RCL1Q8TE85 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.77e-16 | 42 |
epithelial cell | 1.04e-12 | 253 |
respiratory epithelial cell | 2.39e-12 | 13 |
endodermal cell | 2.57e-11 | 58 |
germ line cell | 2.81e-11 | 7 |
germ cell | 2.81e-11 | 7 |
acinar cell | 1.50e-09 | 5 |
epithelial cell of tracheobronchial tree | 1.92e-09 | 9 |
epithelial cell of lower respiratory tract | 1.92e-09 | 9 |
embryonic stem cell | 4.14e-09 | 5 |
protein secreting cell | 7.39e-08 | 6 |
transitional epithelial cell | 1.19e-07 | 4 |
urothelial cell | 1.19e-07 | 4 |
kidney tubule cell | 1.64e-07 | 10 |
nephron tubule epithelial cell | 1.64e-07 | 10 |
general ecto-epithelial cell | 1.75e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
renal system | 1.75e-09 | 48 |
posterior neural tube | 7.05e-09 | 15 |
chordal neural plate | 7.05e-09 | 15 |
orifice | 8.49e-09 | 36 |
urinary system structure | 9.64e-09 | 47 |
tracheobronchial tree | 2.00e-08 | 15 |
lower respiratory tract | 2.00e-08 | 15 |
oral opening | 4.42e-08 | 22 |
cavitated compound organ | 5.25e-08 | 31 |
respiratory system | 1.26e-07 | 74 |
nephron tubule epithelium | 1.64e-07 | 10 |
ectoderm-derived structure | 6.00e-07 | 171 |
ectoderm | 6.00e-07 | 171 |
presumptive ectoderm | 6.00e-07 | 171 |
compound organ | 6.16e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.28e-07 | 22 |
germ cell cancer | 5.28e-07 | 22 |