FFCP PHASE1:Hg19::chr20:5566256..5566262,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56261 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26957 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=420bp_to_ENST00000481038,uc002wmd.3_5end | |||
|cluster_id=chr20:5566256..5566262,- | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_4_at_GPCPD1_5end | |||
|id=chr20:5566256..5566262,- | |||
|ontology_enrichment_celltype=CL:0000738!1.14e-31!140;CL:0002087!5.83e-30!119;CL:0002031!4.40e-29!124;CL:0000766!1.94e-26!76;CL:0000037!2.77e-25!172;CL:0000566!2.77e-25!172;CL:0002032!1.26e-24!165;CL:0000837!1.26e-24!165;CL:0000988!6.16e-24!182;CL:0002057!6.73e-24!42;CL:0000860!2.76e-22!45;CL:0000839!5.66e-22!70;CL:0002194!1.90e-20!63;CL:0000576!1.90e-20!63;CL:0000040!1.90e-20!63;CL:0000559!1.90e-20!63;CL:0000557!4.27e-20!71;CL:0002009!1.10e-19!65;CL:0000763!1.02e-15!112;CL:0000049!1.02e-15!112;CL:0000542!1.20e-08!53;CL:0000051!1.20e-08!53;CL:0000838!1.79e-08!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.94e-39;33!CL:0002057;3.94e-39;33!CL:0000473;8.76e-28;39!CL:0000234;8.76e-28;39!CL:0000576;6.58e-26;48!CL:0000766;4.90e-19;69!CL:0000094;4.39e-13;8!CL:0002087;6.19e-12;104!CL:0000081;1.11e-11;11!CL:0000738;1.08e-08;136!CL:0000775;3.67e-08;3!CL:0000763;5.77e-08;100!CL:0000226;2.95e-07;3!CL:0000842;2.95e-07;3!CL:0000623;7.04e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.07e-43,42;CL:0002057,4.07e-43,42;CL:0000766,8.39e-40,72;CL:0000738,1.25e-36,136;CL:0000473,1.76e-36,48;CL:0000234,1.76e-36,48;CL:0002087,1.08e-31,115;CL:0002194,3.81e-31,59;CL:0000576,3.81e-31,59;CL:0000040,3.81e-31,59;CL:0000559,3.81e-31,59;CL:0002009,8.26e-30,61;CL:0000839,1.16e-28,66;CL:0000557,4.35e-28,67;CL:0000988,7.13e-28,177;CL:0000037,9.31e-28,168;CL:0002031,1.04e-26,120;CL:0002032,1.41e-24,161;CL:0000837,1.41e-24,161;CL:0000763,1.49e-22,108;CL:0000049,1.49e-22,108;CL:0000094,6.06e-13,8;CL:0000081,1.26e-11,11;CL:0000775,3.71e-08,3;CL:0000623,3.35e-07,3;CL:0000825,3.35e-07,3;CL:0000226,3.88e-07,3;CL:0000842,3.88e-07,3;CL:0000134,7.70e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.40e-32;42!CL:0000049;2.78e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.30e-22!102;UBERON:0003061!6.30e-22!102;UBERON:0002193!1.75e-19!112;UBERON:0002371!8.65e-17!80;UBERON:0001474!1.56e-14!86;UBERON:0002405!1.54e-13!115;UBERON:0004765!3.00e-12!101;UBERON:0001434!3.00e-12!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.43e-08;15!UBERON:0000179;8.43e-08;15!UBERON:0000463;8.43e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.51e-30,98;UBERON:0003061,2.51e-30,98;UBERON:0002193,2.39e-26,108;UBERON:0002371,4.08e-25,76;UBERON:0001474,1.53e-22,82;UBERON:0002405,6.08e-20,93;UBERON:0004765,1.19e-19,90;UBERON:0001434,1.05e-16,100;UBERON:0003081,6.22e-12,203;UBERON:0002204,2.76e-08,167;UBERON:0000178,8.43e-08,15;UBERON:0000179,8.43e-08,15;UBERON:0000463,8.43e-08,15 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0.136874425072884,0.376627918784408,0.534893840235659,0.656804715599566,0.472264687882075,0.786728553697808,1.15148819429164,1.23852898652861,0,0,0,0.774672005803016,0.995184627411951,1.17440175733939,3.87796785972314,8.42286679374595,4.99125002646459,1.56740831967947,0.32389366601898,0.257575567634187,3.63495596948912,2.64513160582167,3.39617685662943,3.95129362739664,6.16751832032739,3.71647645074124,2.8769239232215,2.81776777182011,1.18241114944293,6.89491361473237,5.16387746867061,2.70852973188684,2.44715041405386,2.72906150057846,0.674170453335254,2.14258724659632,0.962787081228281,3.83602275479425,2.30895910130701,4.9865914405408,3.40979800426155,1.7412554317715,0.56738522469114,0.622822248995575,7.03496262718881,3.65038042894141,1.73751075764093,2.42159801053347,0.368277635987565,1.58231193720442,0.422510572623884,0.425208599930087,0.209658645508376,1.12328631146495,2.25265339262259,0.48217676009124,1.14005097496499,0.19891667719909,0.547992461293902,0,0.546138611262131,0,1.28019066769952,0.400395987036012,0,0.661044872784862,0.954053754535364,1.70763890732835,1.17447437874188,0.764546456250458,0,0,0,2.75393678159366,4.32311839024081,2.2616164889946,0,0.32592226663359,0.946895611469467,0,0,0.589211814949674,0.886135578334485,0.270803863765016,0.384273959177026,0.780356085359269,0.822189523018381,0.829050053357545,0.289803085735052,0.444859689486181,1.33770414044857,1.04535523804977,0.113309342697566,0.383220493601921,1.03088233644789,0.506039384039006,0,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0.821127996921047,1.61285394579786,4.54648332831962,1.15859523106239,2.43806866313962,0,0,0,0,0.434539556882471,0,0,0.0945348171640679,0.443458794925128,0.43917392846563,0.130979075497713,0,0,0.649094787309367,1.21890816109487,0.664789802594326,0.715471872916026,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0.496971951695318,0,0.529636723252875,0,0,0,0,0,0,0.538842688278752,0.163461903113459,0,0,0,0,0,0.298897361103602,0.117434498643765,0,0.140450806702248,0.61246251376468,0.491337269247072,0.619954687054593,1.18800285728205,3.70900393917835,0,0,0.673344455816265,0.375355559615893,0,0.438977620880838,0.30648779579902,0,0,0,0.427114777637135,0,0,0.103052529238439,0,0,0.337552664482532,0,0,0.184099797284599,0,0.355009592516614,0.10075209822764,0,0,0,0.286804595389004,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0.380508304469197,0,0,0.492434012174795,0.468008530278475,0.297262324577456,0,0,0,0.179117045405697,0.290633938513962,0,1.47798971368783,0.616339038092582,0.621984346622316,0.144119953416961,0.25248486685276,0,0,0,0,0.102827492703324,0,0,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.428933980974443,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0.502257091432126,0,0.239624855491583,0,0,0.434343920002738,0.821905290201534,0.179060963239896,0.224170287987055,1.77327684181734,4.31255149719035,1.66845947163673,0,0,0,0,0,11.2351053592077,20.9413021442817,3.72973962092432,0.12269149171914,0,0,0,0.356857977594324,0.315404830067869,0,0,0,0,0,0,0.260650843404249,0,0,2.06768026122887,6.03999762292127,1.28073069364133,0,0,0,0.496215615637554,0,0,0.256278298511402,0,0.160853921143607,0,0.616838775210622,0,0,0,0,0,0,1.10497186723076,0.114814448164607,0.182091168006717,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0.657779629937804,0.261435451024901,0,0,0,0.618246069886334,0.0915694648183434,0,0,0,0,0,0.308097234229289,0.921022048356777,0.137836572484531,0.429680979473094,0.580066775656914,0.0852266274161009,0.0890320356467374,0,0.384380134730212,0.893288987462089,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0.286249773483982,0.744316738719335,0,0.190630193923825,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0.141405431953713,0,0,1.32687795048244,0,0,0,0,0,0,0.143411352204052,0,0,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,1.70894156152249,0.714695326373367,2.05681136543097,0,0.540031437238115,0.79312517629427,0,0,0,0.371606350251437,0.144269212976445,0.213425530045242,0.159426272728822,0.199579371432817,0,0.423347165447766,0.649243880549111,0,0.228234679033192,0.156679895773023,0,0,0.1605880751037,0.403599414382095,0,0,0.307240764308458,0.447352215784832,0,0,0,0,0,0.66614393599564,0,0,0.439524537815682,0.121360521749513,0.111443384277478,0.284136146806413,0,0,0,0,0.281338832821026,0.779160935160341,0,0,0.996239941255349,0.828851746593443,0,0.102268682502155,1.35393286007176,0,0.269605053441981,0.895105873378046,0,0.887790650732402,9.57932369387759,0,3.87733098438087,0.0927680981618513,0,0.260427761085233,0.0874599999961957,0.724999575434793,0.1137934482855,0.508507300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| |||
|short_description=p4@GPCPD1 | |||
}} |
Latest revision as of 03:41, 17 September 2015
Short description: | p4@GPCPD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GPCPD1_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 420bp_to_ENST00000481038, uc002wmd.3_5end |
EntrezGene: | GPCPD1 |
HGNC: | 26957 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.07e-43 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.07e-43 | 42 |
myeloid leukocyte | 8.39e-40 | 72 |
leukocyte | 1.25e-36 | 136 |
defensive cell | 1.76e-36 | 48 |
phagocyte | 1.76e-36 | 48 |
nongranular leukocyte | 1.08e-31 | 115 |
monopoietic cell | 3.81e-31 | 59 |
monocyte | 3.81e-31 | 59 |
monoblast | 3.81e-31 | 59 |
promonocyte | 3.81e-31 | 59 |
macrophage dendritic cell progenitor | 8.26e-30 | 61 |
myeloid lineage restricted progenitor cell | 1.16e-28 | 66 |
granulocyte monocyte progenitor cell | 4.35e-28 | 67 |
hematopoietic cell | 7.13e-28 | 177 |
hematopoietic stem cell | 9.31e-28 | 168 |
hematopoietic lineage restricted progenitor cell | 1.04e-26 | 120 |
hematopoietic oligopotent progenitor cell | 1.41e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.41e-24 | 161 |
myeloid cell | 1.49e-22 | 108 |
common myeloid progenitor | 1.49e-22 | 108 |
granulocyte | 6.06e-13 | 8 |
blood cell | 1.26e-11 | 11 |
neutrophil | 3.71e-08 | 3 |
natural killer cell | 3.35e-07 | 3 |
pro-NK cell | 3.35e-07 | 3 |
single nucleate cell | 3.88e-07 | 3 |
mononuclear cell | 3.88e-07 | 3 |
mesenchymal cell | 7.70e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.51e-30 | 98 |
blood island | 2.51e-30 | 98 |
hemolymphoid system | 2.39e-26 | 108 |
bone marrow | 4.08e-25 | 76 |
bone element | 1.53e-22 | 82 |
immune system | 6.08e-20 | 93 |
skeletal element | 1.19e-19 | 90 |
skeletal system | 1.05e-16 | 100 |
lateral plate mesoderm | 6.22e-12 | 203 |
musculoskeletal system | 2.76e-08 | 167 |
blood | 8.43e-08 | 15 |
haemolymphatic fluid | 8.43e-08 | 15 |
organism substance | 8.43e-08 | 15 |