FFCP PHASE1:Hg19::chr9:136242982..136243001,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:136242982..136243001,-
|short_description=p3@SURF4
|description=CAGE_peak_3_at_SURF4_5end
|association_with_transcript=-12bp_to_ENST00000371989,ENST0000048...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6836 | |EntrezGene=6836 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11476 | |HGNC=11476 | ||
|TSSclassifier=strong | |||
|UniProt=O15260,Q5T8U7 | |UniProt=O15260,Q5T8U7 | ||
|association_with_transcript=-12bp_to_ENST00000371989,ENST00000485435,NM_033161,uc004cdj.2,uc011mdb.1,uc011mdc.1,uc011mdd.1_5end | |||
|cluster_id=chr9:136242982..136243001,- | |||
|description=CAGE_peak_3_at_SURF4_5end | |||
|id=chr9:136242982..136243001,- | |||
|ontology_enrichment_celltype=CL:0000055!5.47e-24!180;CL:0000183!2.25e-16!59;CL:0000680!5.39e-15!57;CL:0000056!5.39e-15!57;CL:0000355!5.39e-15!57;CL:0000187!2.09e-14!54;CL:0000393!1.03e-13!60;CL:0000211!1.03e-13!60;CL:0000192!1.74e-13!42;CL:0000514!1.74e-13!42;CL:0000057!3.19e-11!75;CL:0000359!2.82e-10!32;CL:0000222!3.84e-10!119 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.52e-10;43!CL:0000359;1.02e-09;32!CL:0000187;2.21e-08;55!CL:0000393;2.80e-07;61!CL:0000211;2.80e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.55e-15,58;CL:0000056,3.55e-15,58;CL:0000355,3.55e-15,58;CL:0000187,1.38e-14,55;CL:0000393,6.75e-14,61;CL:0000211,6.75e-14,61;CL:0000192,1.18e-13,43;CL:0000514,1.18e-13,43;CL:0000057,1.99e-11,76;CL:0000222,2.70e-10,121;CL:0000359,2.82e-10,32 | |||
|ontology_enrichment_development_v019=CL:0000514;5.52e-10;43!CL:0000355;2.03e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!1.32e-16!70;UBERON:0000914!1.89e-16!83;UBERON:0002329!1.89e-16!83;UBERON:0003077!1.89e-16!83;UBERON:0003059!1.89e-16!83;UBERON:0007282!1.89e-16!83;UBERON:0009618!1.89e-16!83;UBERON:0007285!1.89e-16!83;UBERON:0001134!5.59e-15!61;UBERON:0002036!5.59e-15!61;UBERON:0003082!5.59e-15!61;UBERON:0002385!4.24e-14!63;UBERON:0001015!4.24e-14!63;UBERON:0000383!4.24e-14!63;UBERON:0000486!3.24e-12!82;UBERON:0005256!3.94e-11!143;UBERON:0001637!2.26e-08!42;UBERON:0003509!2.26e-08!42;UBERON:0004572!2.26e-08!42;UBERON:0004573!8.12e-08!33;UBERON:0004571!8.12e-08!33;UBERON:0004872!9.72e-08!84;UBERON:0002049!1.31e-07!79;UBERON:0007798!1.31e-07!79;UBERON:0001981!1.42e-07!60;UBERON:0007500!1.42e-07!60;UBERON:0004537!1.42e-07!60;UBERON:0006965!1.42e-07!60;UBERON:0000475!2.09e-07!365;UBERON:0000490!5.81e-07!138;UBERON:0002100!7.07e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.00e-07;33!UBERON:0004571;4.00e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,6.01e-19,78;UBERON:0007524,5.25e-17,73;UBERON:0002329,8.55e-17,71;UBERON:0003059,8.55e-17,71;UBERON:0007282,8.55e-17,71;UBERON:0004290,8.55e-17,71;UBERON:0009618,8.55e-17,71;UBERON:0003077,1.64e-16,72;UBERON:0007285,1.64e-16,72;UBERON:0001134,3.66e-15,62;UBERON:0002036,3.66e-15,62;UBERON:0003082,3.66e-15,62;UBERON:0002385,2.77e-14,64;UBERON:0001015,2.77e-14,64;UBERON:0000383,2.77e-14,64;UBERON:0000486,2.12e-12,83;UBERON:0003104,6.24e-12,160;UBERON:0009142,6.24e-12,160;UBERON:0005256,2.03e-10,122;UBERON:0000490,2.12e-08,148;UBERON:0001637,2.26e-08,42;UBERON:0003509,2.26e-08,42;UBERON:0004572,2.26e-08,42;UBERON:0004573,8.12e-08,33;UBERON:0004571,8.12e-08,33;UBERON:0004872,1.47e-07,83;UBERON:0002049,1.99e-07,78;UBERON:0007798,1.99e-07,78;UBERON:0007500,2.19e-07,59;UBERON:0001981,2.19e-07,59;UBERON:0004537,2.19e-07,59;UBERON:0006965,2.19e-07,59 | |||
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| ||
|short_description=p3@SURF4 | |||
}} | }} |
Latest revision as of 07:02, 16 September 2015
Short description: | p3@SURF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SURF4_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000371989, ENST00000485435, NM_033161, uc004cdj.2, uc011mdb.1, uc011mdc.1, uc011mdd.1_5end |
EntrezGene: | SURF4 |
HGNC: | 11476 |
UniProt: | O15260Q5T8U7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.55e-15 | 58 |
myoblast | 3.55e-15 | 58 |
multi-potent skeletal muscle stem cell | 3.55e-15 | 58 |
muscle cell | 1.38e-14 | 55 |
electrically responsive cell | 6.75e-14 | 61 |
electrically active cell | 6.75e-14 | 61 |
smooth muscle cell | 1.18e-13 | 43 |
smooth muscle myoblast | 1.18e-13 | 43 |
fibroblast | 1.99e-11 | 76 |
mesodermal cell | 2.70e-10 | 121 |
vascular associated smooth muscle cell | 2.82e-10 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 6.01e-19 | 78 |
dense mesenchyme tissue | 5.25e-17 | 73 |
somite | 8.55e-17 | 71 |
presomitic mesoderm | 8.55e-17 | 71 |
presumptive segmental plate | 8.55e-17 | 71 |
dermomyotome | 8.55e-17 | 71 |
trunk paraxial mesoderm | 8.55e-17 | 71 |
paraxial mesoderm | 1.64e-16 | 72 |
presumptive paraxial mesoderm | 1.64e-16 | 72 |
skeletal muscle tissue | 3.66e-15 | 62 |
striated muscle tissue | 3.66e-15 | 62 |
myotome | 3.66e-15 | 62 |
muscle tissue | 2.77e-14 | 64 |
musculature | 2.77e-14 | 64 |
musculature of body | 2.77e-14 | 64 |
multilaminar epithelium | 2.12e-12 | 83 |
mesenchyme | 6.24e-12 | 160 |
entire embryonic mesenchyme | 6.24e-12 | 160 |
trunk mesenchyme | 2.03e-10 | 122 |
unilaminar epithelium | 2.12e-08 | 148 |
artery | 2.26e-08 | 42 |
arterial blood vessel | 2.26e-08 | 42 |
arterial system | 2.26e-08 | 42 |
systemic artery | 8.12e-08 | 33 |
systemic arterial system | 8.12e-08 | 33 |
splanchnic layer of lateral plate mesoderm | 1.47e-07 | 83 |
vasculature | 1.99e-07 | 78 |
vascular system | 1.99e-07 | 78 |
epithelial tube open at both ends | 2.19e-07 | 59 |
blood vessel | 2.19e-07 | 59 |
blood vasculature | 2.19e-07 | 59 |
vascular cord | 2.19e-07 | 59 |