FFCP PHASE1:Hg19::chr3:51976988..51977042,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10039 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=273 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=35bp_to_ENST00000470601_5end | |||
|cluster_id=chr3:51976988..51977042,+ | |||
|description=CAGE_peak_2_at_PARP3_5end | |||
|id=chr3:51976988..51977042,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.13e-14!180;CL:0000057!5.36e-13!75;CL:0000222!5.95e-12!119;CL:0000183!3.56e-10!59;CL:0000680!5.57e-10!57;CL:0000056!5.57e-10!57;CL:0000355!5.57e-10!57;CL:0002371!1.03e-09!591;CL:0000187!3.56e-09!54;CL:0000192!6.31e-09!42;CL:0000514!6.31e-09!42;CL:0000359!1.82e-08!32;CL:0000144!2.29e-08!625;CL:0002620!4.13e-08!23;CL:1000497!5.62e-07!18;CL:0002518!5.62e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.66e-08;32!CL:0002620;6.40e-08;23!CL:0000192;2.65e-07;43!CL:1000497;5.37e-07;17!CL:0002518;5.37e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.51e-13,76;CL:0000222,2.41e-12,121;CL:0000680,3.29e-10,58;CL:0000056,3.29e-10,58;CL:0000355,3.29e-10,58;CL:0000187,2.14e-09,55;CL:0000192,3.83e-09,43;CL:0000514,3.83e-09,43;CL:0000359,1.31e-08,32;CL:0002620,5.36e-08,23;CL:1000497,5.41e-07,17;CL:0002518,5.41e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;2.65e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.07e-13!143;UBERON:0000486!3.81e-12!82;UBERON:0000914!3.44e-11!83;UBERON:0002329!3.44e-11!83;UBERON:0003077!3.44e-11!83;UBERON:0003059!3.44e-11!83;UBERON:0007282!3.44e-11!83;UBERON:0009618!3.44e-11!83;UBERON:0007285!3.44e-11!83;UBERON:0002100!8.50e-11!216;UBERON:0004290!1.78e-10!70;UBERON:0002385!4.34e-10!63;UBERON:0001015!4.34e-10!63;UBERON:0000383!4.34e-10!63;UBERON:0003914!9.52e-10!118;UBERON:0001134!1.02e-09!61;UBERON:0002036!1.02e-09!61;UBERON:0003082!1.02e-09!61;UBERON:0003104!4.58e-09!238;UBERON:0009142!4.58e-09!238;UBERON:0004573!3.08e-07!33;UBERON:0004571!3.08e-07!33;UBERON:0003102!3.48e-07!95;UBERON:0001637!8.13e-07!42;UBERON:0003509!8.13e-07!42;UBERON:0004572!8.13e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.14e-12,83;UBERON:0003104,2.24e-12,160;UBERON:0009142,2.24e-12,160;UBERON:0007503,2.92e-12,78;UBERON:0002329,1.04e-10,71;UBERON:0003059,1.04e-10,71;UBERON:0007282,1.04e-10,71;UBERON:0004290,1.04e-10,71;UBERON:0009618,1.04e-10,71;UBERON:0002100,1.09e-10,199;UBERON:0005256,2.41e-10,122;UBERON:0002385,2.56e-10,64;UBERON:0001015,2.56e-10,64;UBERON:0000383,2.56e-10,64;UBERON:0003077,4.02e-10,72;UBERON:0007285,4.02e-10,72;UBERON:0007524,4.68e-10,73;UBERON:0001134,6.03e-10,62;UBERON:0002036,6.03e-10,62;UBERON:0003082,6.03e-10,62;UBERON:0003914,9.76e-10,117;UBERON:0003102,2.78e-07,99;UBERON:0004573,2.80e-07,33;UBERON:0004571,2.80e-07,33;UBERON:0001637,7.44e-07,42;UBERON:0003509,7.44e-07,42;UBERON:0004572,7.44e-07,42 | |||
|phase1_expression=3.63356758541113,3.21150785836475,2.67813367782345,4.00293193412522,1.78784437770915,5.23403114460221,7.59899634504932,3.79031924056099,5.22371256399677,4.17747692052565,14.653824527421,5.46103430325431,10.5506791291381,11.7578035312044,17.2326635378516,9.41255205032485,7.23233433628772,10.2243412654232,5.36726078669558,2.70866327768933,5.50801866359483,1.56727360739044,0.85870796139317,0.821246550437305,0.627713197974014,2.44522898393444,2.8735206307481,2.36132343941038,2.75354993794233,0.383829398097213,1.70297735647684,1.83884244895785,5.4217065380085,8.8740962440029,1.31694240986513,0.284338464974843,2.64240395401362,1.66198622559563,1.60435557976113,1.95309783644267,3.35873211359887,3.56283032620878,2.31818010870768,2.18097358169347,2.26725566213286,1.94067248950253,1.85943229524548,1.6446715520873,2.47765096716083,3.45230870786581,2.0492856522328,1.18241114944293,1.72372840368309,2.5819387343353,4.06279459783025,2.07066573496865,2.72906150057846,2.69668181334102,2.14258724659632,2.24650318953266,1.27867425159808,2.96866170168044,0.997318288108159,1.70489900213078,3.77272010217159,1.70215567407342,1.24564449799115,2.26123798731069,1.0429658368404,2.38907729175628,3.63239701580021,1.47311054395026,2.21523671208619,3.38008458099107,3.61427309940574,2.72556239160889,1.79725809834392,1.35159203557356,1.12507910687956,1.99508920618874,2.98375015798635,3.28795476776341,5.27988733383968,4.36910889009705,4.44754626931777,3.84057200309856,4.00395987036012,1.14950487990897,5.2883589822789,3.81621501814146,9.10740750575117,7.04684627245127,8.02773779062981,2.64342657158052,1.68152568894461,1.58030450865046,1.96709770113833,3.14408610199332,5.55124047298675,6.35308682484577,1.95553359980154,2.36723902867367,3.89653456815823,4.79064964606246,2.3568472597987,3.76607620792156,2.16643091012012,6.27647466655808,6.89314542067355,6.57751618414705,5.52700035571697,13.0411388580774,2.81744470007915,3.74557159325598,5.22677619024884,5.32553910678561,2.29932296161153,2.06176467289578,7.59059076058509,2.54852331459277,3.25541726928209,3.8018081777935,2.10805166708882,4.73550461271348,2.49861453104692,1.65744076430812,2.46338399076314,4.03213486449465,5.08136371988664,1.59306844271079,36.5710299470943,3.35350429851818,1.79007586580942,13.373248638229,26.5709092637021,19.1197405028287,12.7245751528176,10.2193322763554,1.13441780596881,1.33037638477538,0.614843499851882,3.92937226493138,15.3004021082868,4.44941331341315,2.59637914923747,2.96020553408754,3.45690697349049,0.715471872916026,1.14398982156026,0.74291500265913,2.58391129576717,5.16140757063675,2.77712401286075,3.39184765154406,1.67799774483962,3.30141650328081,1.46296476575767,2.32575083252396,2.49036383880697,2.34304428935269,6.44526907374635,2.28081631715554,3.66093086322254,3.30896772311282,1.62028389576352,2.85759130509055,3.59246996201872,3.82879033643296,1.53316637465883,0,2.01521918323448,0,0,0.872188104285069,10.4364109856017,5.44511200157693,14.6974190702673,13.1944845544454,4.965357350777,5.60677600142307,4.2699598291882,3.7000132262574,2.8008993185979,3.09834545760283,2.12500474047496,1.21085942115945,0,1.87457145467037,10.9256026890612,7.41613368007784,8.96692083310806,3.64046945795671,2.42809416552197,1.68540968042698,7.96201267894084,3.80786383666481,15.3955413951891,13.0680314301026,13.3524141810421,10.9219363432563,27.3074893890171,2.35670559535693,2.37725187756732,13.576141658725,28.0945677363736,20.2281945227353,13.8219014194069,1.24775401476023,18.4771324759528,7.47450860864986,20.3454625113179,34.2103849536219,25.4539747218944,40.1919242471182,18.7978024894906,26.8354368263613,23.8720662644937,36.3504634911525,15.372333073264,13.4166227159614,32.6608825115285,16.8256004040159,9.32583257707682,2.51239109112286,5.45492241181669,4.01526433544605,0,0,0.232387885739037,0.518305275076852,0,0,18.7739438795779,9.00537313470039,5.52539685409922,21.360924689471,19.4907460050788,1.30137480043828,1.34867752062481,1.20505514941741,1.10293972732394,0.435758888184812,1.42362371466658,0.943819157121151,1.17732879075208,1.92373578473195,3.69077727312324,5.60967095213783,8.6430542379594,13.2307840246988,10.1404027857465,4.91413608338813,7.68026878685825,0,1.59884970106048,1.3725424823882,1.97550513735526,0,1.80952150340936,2.12953423864618,1.62904152655162,11.4392826380754,4.3299402607582,2.66639931442677,2.11335649624479,6.6408565970094,4.62985512576611,5.70762456703795,0,0,5.41677413392274,4.91408956792399,3.12125440806329,0,6.71928512795438,3.68615252830205,3.22410681730254,5.81267877027924,1.53353071666084,5.91195885475132,5.19485760678034,1.4512968087854,1.29707958075265,3.40854570251226,0.507983154337352,3.05590740446622,1.17217447210047,0,0.719792448923265,1.50171528921959,0,1.12131084345361,0,1.466765716419,2.97324946242889,32.1890801266694,5.917119267892,6.11657668145202,7.28052058379563,7.71622122786426,7.09245660116391,12.5218424137567,3.28849385413739,11.3950537132203,14.8183260620538,4.56030658011229,1.06617584622764,1.58390374586686,19.5935595088731,11.3299349618038,13.2964078272136,3.64871341923571,1.50677127429638,4.21667878966063,3.11512312139057,8.04033550838797,61.3338691675089,6.9495027200438,12.9450083206742,10.7436577943937,0,3.15249216323084,1.2937654491571,1.41177339907723,1.52456774533478,0,0,0.670065061337395,0,2.24702107184155,2.99161459204025,1.24324654030811,11.1649257464417,9.00306937907419,14.377046256086,21.2130278761423,14.6311770813673,20.0282067093097,18.1569193238705,2.70851489754947,2.27407504055985,4.1389228517002,5.97803038681893,6.63729006750131,14.9439816885103,11.9438706052272,2.74514739048685,3.10152039184331,2.37285620900479,2.881644060693,0.303127571446259,1.66435439510497,3.0239029332968,7.19512642674453,22.7123720466332,12.0683840606222,5.50998341799514,3.58195074346692,3.69964018630297,10.3892646511494,8.3273234653434,11.8966355959795,15.1935238625547,16.6161417338759,13.0155623875154,0.120859449591622,6.41620704970512,1.01289087829486,4.24813458209045,6.55528204824181,5.76947425821466,17.5967849033891,10.7821471946181,17.2556949218908,14.6139224653261,8.33857868253718,4.54933536283586,5.61309227412502,6.0456456508599,7.71136263451447,12.1925896894734,21.5726602757587,13.7633187444321,20.7769002232181,12.536986264442,0.219259876645935,0.261435451024901,3.59030175162945,5.576248976895,0.325378394664303,4.01859945426117,0.183138929636687,0,8.03971753194641,1.30012049207304,9.64103579064957,7.44364530849339,5.08360436478326,4.60511024178389,3.44591431211326,7.41199689591088,8.26595155311102,2.98293195956353,1.60257664164127,1.4875642382488,6.53446229041361,11.2299186995234,1.71968227454435,30.2149607043236,25.8146124401125,11.8496335927302,9.54904098545875,14.9045688488766,11.3091288969759,9.45153517429992,5.43874569619567,0,5.06207079549961,6.86268698125769,11.0036050263874,5.99114583247489,19.0921948755562,7.8494864019923,4.31693898199955,4.11805544604082,3.18093486333353,11.3222189681057,11.0957224821106,8.42516912477962,3.90106991271672,9.26111260598881,17.9605249486484,6.27899592476734,3.95935209470396,15.821136326834,6.61638412255349,5.30751180192976,14.9073300986279,12.1542862196004,9.83842128069949,7.10186319369464,5.26699946769575,8.45086807596724,9.32173789326335,7.36867807598409,8.91677628703126,5.67617702512956,17.3108260944085,28.9779505804714,4.17420491142287,2.44954304171488,3.94510662174599,6.70302275535787,6.53345909167936,4.9896214411693,11.6236450621232,11.7930032967338,12.4160442990269,15.6211912140732,3.04468565539302,2.29391162142713,3.41788312304498,1.42939065274673,1.64544909234478,3.24236655596359,0.540031437238115,3.96562588147135,1.38871292465715,0.962479855263359,2.94048259177238,0.929015875628594,1.00988449083511,1.70740424036194,0.478278818186467,0.199579371432817,0.957526850661834,0.635020748171649,0.649243880549111,1.12318871245384,0.456469358066384,0.156679895773023,0,2.20079311142084,1.2847046008296,0.201799707191048,6.81353980304522,0,0.921722292925374,0.671028323677248,0.333698283423817,0.781552381608161,1.11362469558097,1.23087398947712,1.6227340708559,0,1.4098700508785,14.7841026922494,4.68826173670061,0,11.5901119648577,5.68272293612826,2.14870036263921,2.07875276582847,3.37876772309155,0,0.140669416410513,3.00533503561846,10.2178402020591,3.3780065300479,7.57142355354065,11.0513566212459,0,1.94310496754094,8.49285157681379,19.9065336103557,3.41499734359842,1.61119057208048,1.53471711068062,5.32674390439441,4.7896618469388,40.0093164520693,0,0.649376687132959,0,0,4.023159999825,4.34999745260876,2.16207551742449,7.37335585849022,4.49136595359079,0,0,0.520874984799877,1.77148277162768,0.361789315876224,0,0.110579259931225,0.591095237907095,0,1.41620002574687,1.95193241990045,1.92375646259493,2.27884111694002,0,0.179515288819544,0,1.27600463892768,1.55715908783166,1.5991043280559,1.02193298195737,0.31396051279005,2.16075186470203,0.225595660617181,0.19606253431774,0.167821586975843,0,0.317873157960757,8.43992258112108,5.71314828557017,0.424059214301822,0.865554558968364,14.9289289661776,9.0226715793406,0.611030144933625,3.85477467284809,4.81899361891361,5.11667552576731,0.67401132980677,2.40773294189637,0.937057782901357,0,2.34797542718508,8.74009366322734,3.15667522279512,9.67925728389311,0.30607276163049,4.35987399436567,0,0,7.31119259977904,7.28182302926097,5.02292669451561,8.36307008410712,5.69219092059585,16.3636114155504,2.42983633669183,4.99761226813326,1.39294730528644,4.89234671077684,9.45923178593891,0.387025325156341,1.0232504392066,0.821154570532092,5.72235197281675,1.3238419003725,1.12990370390266,8.90772510203881,7.94858446811959,0.379864775735272,3.91102765469606,9.45874078968098,6.40358984218058,1.79828648623917,3.16998917739033,0.458146384663663,0.171594997861965,0.864328787928898,14.1647890544593,2.82832841540154,19.4343014685268,20.6067607235296,7.64986632272413,7.22376474753797,0,0.547621515567972,0,27.0752228094573,14.9845791939209,3.6306712165393,5.04152932825704,6.46085722119133,6.38972801596772,4.72148652950228,6.4719722658143,1.20930250476107,11.8898961568993,1.16495949527454,1.57566364614447,1.2362378757175,1.88729922791718,0.393709926058995,5.08039992394707,0.795229689809303,0.408610218334727,0,0.412618309791701,0.415440338029185,3.14963448172101,3.0952078182318,0.242998226632099,2.0126081255956,6.22565087663666,2.8325477592899,7.28642321983905,4.84075816198681,1.72723677587501,11.4351252219739,9.26928758511604,15.0018437216302,5.97299561929084,10.3706578944152,7.83809664262582,4.7892076624995,1.4776653734881,24.0247110717445,11.4445212435327,2.63794020620548,1.32506888912221,1.68067843270016,0.39669780522807,4.79043146076122,7.75296524548339,5.12579580324934,7.3886023396843,10.7702154390271,8.43482237080316,7.11401874832599,1.70509637733254,1.91502377331055,9.79232046065053,8.0220766087264,10.1094040331942,8.19681576774511,0.785270481251171,0.886068179966986,0.488105059607853,0.625954653532499,5.73409195690071,0.665574309221114,1.8628920882415,6.22568857213039,1.8747061194316,0.606596470166591,2.85465333544967,9.41063278792687,0,0,9.40305258187307,6.77768598556951,7.76728206103659,20.6449275749847,19.6222963367009,33.8128264206684,9.38244280427387,13.7620140624548,7.30554842739068,6.20991629956462,5.09749654923848,9.8956684675993,4.192099835659,12.8558924430665,9.83614343864581,8.86966605079948,18.0309130796662,11.8049615772327,8.54428539729789,8.72873564172285,8.80766567748405,16.7052153556258,5.97143833047924,7.20049976393677,22.6641165420643,21.8887167697847,5.04739592914604,10.0162311811798,4.93215660162329,1.30497145982606,7.25458961639272,12.0391686648394,10.0342048847652,19.6997725189636,2.47041157728778,21.4898368587133,13.6050642378328,9.25987383700391,10.6433737611436,7.6872455576384,1.72715170865599,7.59649890443455,0.553033744606923,2.14346339723327,1.0629187225069,6.70618116448961,0.655219697692825,3.44082072255207,7.39592431755195,4.39972270880846,0.106691729694141,4.99423441016365,20.4305743284061,0.920529751259204,0.279759015438889,2.48830904013189,0,2.91126990771041,0,0,0.509197589862076,0,0,2.23457967189298,15.5822131820175,1.81382013502883,0,3.87943538059752,4.2874366829448,0.449604575675217,0,0,0.205116364240755,0,0.760729777106397,0.645902582527404,2.85538840518309,3.72961330303897,0.353909170043221,3.4851433719119,8.08679663052368,11.0600807685478,1.3807198521202,2.3869946653953,1.35378591028663,16.9432257710957,0,0,3.93052602024232,10.2020699489761,0.405225507710368,0.781078098613847,0.206686796501184,0.634158101939068,0,1.64477330057155,6.45074531906083,0,7.66574565837572,12.3211422252006,6.72567444437648,0,0.91064876540519,1.1531308121143,1.49804183822513,12.5186246889315,0.747667062745149,0.591954962065642,4.49136595359079,4.56048747757483,6.12246124234009,0.471346769748006,0.560544326627578,1.82631744101899,9.0689588311821,10.9882888214022,2.43020250200632,4.58239474024907,2.90603563420313,0.173858272302579,12.827381835684,7.66699807403236,4.0972434502548,4.14755797088455,5.16272830584333,6.27159603871996,6.73185897597346,5.50403165248208,8.47695413612985,8.99598518426528,5.7332336338646,5.03349443090065,1.47225350422864,4.14520944939716,16.1857209296974,5.54379157023734,1.1598144313382,1.45713297917742,0,0,0.118920090777569,0,0,3.92503393273351,13.5826518269983,6.77534637562268,0,4.90296643507811,2.35676547101626,1.96308467114945,1.48523200163543,0,21.0709622212893,5.82700291475092,2.8361470708374,3.29805814552265,2.32120120187355,5.29342307573538,1.5245859670942,12.4157186001908,3.21110498383179,0.286679166302903,1.73548718412503,0.815897882290976,0,5.81929524566941,23.0636911263386,40.6714553195648,9.51778436672336,0.883164973845552,0,3.4208595273088,0,0,0,0,2.57647573942014,0.803892390468535,2.48750831837634,0.517164979309476,6.18378547512845,4.76128862927481,1.55013383606415,0.869046000142011,7.5128347929011,5.28271413708769,12.3291485264514,7.40236942849669,4.44903291410865,6.66785324844416,5.09227658288002,1.99596213927608,1.13964576055364,13.9812823099807,11.5843369372164,8.80286980644551,0,2.93379466038879,1.22068853494722,2.66302709674205,6.03821380773079,28.2100273226845 | |||
|short_description=p2@PARP3 | |||
}} |
Latest revision as of 21:48, 18 September 2015
Short description: | p2@PARP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PARP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 35bp_to_ENST00000470601_5end |
EntrezGene: | PARP3 |
HGNC: | 273 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.51e-13 | 76 |
mesodermal cell | 2.41e-12 | 121 |
muscle precursor cell | 3.29e-10 | 58 |
myoblast | 3.29e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.29e-10 | 58 |
muscle cell | 2.14e-09 | 55 |
smooth muscle cell | 3.83e-09 | 43 |
smooth muscle myoblast | 3.83e-09 | 43 |
vascular associated smooth muscle cell | 1.31e-08 | 32 |
skin fibroblast | 5.36e-08 | 23 |
kidney cell | 5.41e-07 | 17 |
kidney epithelial cell | 5.41e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 2.14e-12 | 83 |
mesenchyme | 2.24e-12 | 160 |
entire embryonic mesenchyme | 2.24e-12 | 160 |
epithelial vesicle | 2.92e-12 | 78 |
somite | 1.04e-10 | 71 |
presomitic mesoderm | 1.04e-10 | 71 |
presumptive segmental plate | 1.04e-10 | 71 |
dermomyotome | 1.04e-10 | 71 |
trunk paraxial mesoderm | 1.04e-10 | 71 |
trunk | 1.09e-10 | 199 |
trunk mesenchyme | 2.41e-10 | 122 |
muscle tissue | 2.56e-10 | 64 |
musculature | 2.56e-10 | 64 |
musculature of body | 2.56e-10 | 64 |
paraxial mesoderm | 4.02e-10 | 72 |
presumptive paraxial mesoderm | 4.02e-10 | 72 |
dense mesenchyme tissue | 4.68e-10 | 73 |
skeletal muscle tissue | 6.03e-10 | 62 |
striated muscle tissue | 6.03e-10 | 62 |
myotome | 6.03e-10 | 62 |
epithelial tube | 9.76e-10 | 117 |
surface structure | 2.78e-07 | 99 |
systemic artery | 2.80e-07 | 33 |
systemic arterial system | 2.80e-07 | 33 |
artery | 7.44e-07 | 42 |
arterial blood vessel | 7.44e-07 | 42 |
arterial system | 7.44e-07 | 42 |